RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 CAPN6Q9Y6Q1 641 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 GLYATL1P3A0A0U1RQE8 302 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 GOLGA8MH3BSY2 632 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 PSMD11O00231 422 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 SIN3BO75182 1162 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 ATXN1P54253 815 aaKnown RBP9.25□□□□□ -0.93
UPF2-202ENST00000357604 DPYSQ14117 519 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 POTEHQ6S545 545 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 ZBED8Q8IZ13 594 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 LRRC39Q96DD0 335 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 ZNF514Q96K75 400 aaPredicted RBP9.25□□□□□ -0.93
UPF2-202ENST00000357604 CABS1Q96KC9 395 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 FCRL5Q96RD9 977 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 CENPKQ9BS16 269 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 HDAC8Q9BY41 377 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 FAM83DQ9H4H8 585 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 ARFGAP3Q9NP61 516 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 H2AFYO75367 372 aaKnown RBP9.25□□□□□ -0.93
UPF2-202ENST00000357604 CNTN5O94779 1100 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 ADRA1DP25100 572 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 PSMB4P28070 264 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 STARD6P59095 220 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 BRD3Q15059 726 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 CA9Q16790 459 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 ATXN7L2Q5T6C5 722 aaPredicted RBP9.25□□□□□ -0.93
UPF2-202ENST00000357604 ARMCX6Q7L4S7 300 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 LRRC6Q86X45 466 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 MYO1HQ8N1T3 1032 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 ELMO2Q96JJ3 720 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 OSGEPL1Q9H4B0 414 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 TMCO1Q9UM00 188 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 SHOC2Q9UQ13 582 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 COLEC10Q9Y6Z7 277 aa9.25□□□□□ -0.93
UPF2-202ENST00000357604 ZNF500O60304 480 aaPredicted RBP9.24□□□□□ -0.93
UPF2-202ENST00000357604 SNAP91O60641 907 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 GSTM1P09488 218 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 TPSB2P20231 275 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 CYP2A7P20853 494 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 HPDP32754 393 aaPredicted RBP9.24□□□□□ -0.93
UPF2-202ENST00000357604 ACVRL1P37023 503 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 CREB5Q02930 508 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 GSTM4Q03013 218 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 DLX2Q07687 328 aaPredicted RBP9.24□□□□□ -0.93
UPF2-202ENST00000357604 TPSAB1Q15661 275 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 ALS2CLQ60I27 953 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 AP2M1Q96CW1 435 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 PLA2G2FQ9BZM2 168 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 DDX47Q9H0S4 455 aaKnown RBP9.24□□□□□ -0.93
UPF2-202ENST00000357604 NFU1Q9UMS0 254 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 SNX24Q9Y343 169 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 PCDHGA2Q9Y5H1 932 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 KCNK1O00180 336 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 SMIM24O75264 130 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 HNRNPLP14866 589 aaKnown RBP eCLIP9.24□□□□□ -0.93
UPF2-202ENST00000357604 MZF1P28698 734 aaPredicted RBP9.24□□□□□ -0.93
UPF2-202ENST00000357604 SPRP35270 261 aaPredicted RBP9.24□□□□□ -0.93
UPF2-202ENST00000357604 CFAP157Q5JU67 520 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 TRIM42Q8IWZ5 723 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 CCDC110Q8TBZ0 833 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 PCDH10Q9P2E7 1040 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 CITO14578 2027 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 PRR33A8MZF0 331 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 DDX3YO15523 660 aaKnown RBP9.24□□□□□ -0.93
UPF2-202ENST00000357604 NARSO43776 548 aaKnown RBP9.24□□□□□ -0.93
UPF2-202ENST00000357604 KCNJ13O60928 360 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 LEFTY1O75610 366 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 CTPS1P17812 591 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 IDSP22304 550 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 EIF3BP55884 814 aaKnown RBP9.24□□□□□ -0.93
UPF2-202ENST00000357604 WNT3AP56704 352 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 GALNT3Q14435 633 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 SH3PXD2AQ5TCZ1 1133 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 C6orf163Q5TEZ5 329 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 LAIR1Q6GTX8 287 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 MICALCLQ6ZW33 695 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 HDXQ7Z353 690 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 HORMAD1Q86X24 394 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 REXO1L1PQ8IX06 675 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 APCDD1Q8J025 514 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 OR6K2Q8NGY2 324 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 FATE1Q969F0 183 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 MRRFQ96E11 262 aaKnown RBP9.24□□□□□ -0.93
UPF2-202ENST00000357604 ZNF711Q9Y462 761 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 SRCP12931 536 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 PBLDP30039 288 aaPredicted RBP9.24□□□□□ -0.93
UPF2-202ENST00000357604 ALFQ53S48 1182 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 EGFLAMQ63HQ2 1017 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 STYXQ8WUJ0 223 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 LGMNQ99538 433 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 WRAP53Q9BUR4 548 aaKnown RBP9.24□□□□□ -0.93
UPF2-202ENST00000357604 SMARCAL1Q9NZC9 954 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 DKK3Q9UBP4 350 aa9.24□□□□□ -0.93
UPF2-202ENST00000357604 G3BP2Q9UN86 482 aaKnown RBP9.24□□□□□ -0.93
UPF2-202ENST00000357604 RHPN2P1A8MT19 583 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 PDZK1P1A8MUH7 402 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 TMX2-CTNND1H3BSU7 103 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 NDUFS1P28331 727 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 CCDC157Q569K6 752 aa9.23□□□□□ -0.93
UPF2-202ENST00000357604 DRICH1Q6PGQ1 229 aaPredicted RBP9.23□□□□□ -0.93
UPF2-202ENST00000357604 TRMT10CQ7L0Y3 403 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms