RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TBX2Q13207 712 aaPredicted RBP13.94□□□□□ -0.18
CSPG4-201ENST00000308508 E2F2Q14209 437 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 TOMM20Q15388 145 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 C1orf189Q5VU69 101 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 DEF8Q6ZN54 512 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 ZNF615Q8N8J6 731 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 EDEM1Q92611 657 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 COL26A1Q96A83 441 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 TMCO6Q96DC7 493 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 MED11Q9P086 117 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 DGKBQ9Y6T7 804 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 BCKDKO14874 412 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 SH3BGRLO75368 114 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 URODP06132 367 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 KDELR1P24390 212 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 MTHFRP42898 656 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 CTSKP43235 329 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 SLC6A3Q01959 620 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 APTXQ7Z2E3 356 aaKnown RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 ZNF354BQ96LW1 612 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 DDX43Q9NXZ2 648 aaKnown RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 FAM86C2PA6NEL3 165 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 RFXANKO14593 260 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 PTGR2Q8N8N7 351 aaPredicted RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 NEK7Q8TDX7 302 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 OR52E6Q96RD3 313 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 LMAN2LQ9H0V9 348 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 RPTORQ8N122 1335 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 ARF3P61204 181 aaPredicted RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 ARF1P84077 181 aaKnown RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 ITGA7Q13683 1181 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 MEA1Q16626 185 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 NKX2-3Q8TAU0 364 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 OAS3Q9Y6K5 1087 aaKnown RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 AP2A2O94973 939 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 RBL1P28749 1068 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 BUD31P41223 144 aaPredicted RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 MAPK9P45984 424 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 DRG2P55039 364 aaKnown RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 TAF1CQ15572 869 aaPredicted RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 ZBTB46Q86UZ6 589 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 ALYREFQ86V81 257 aaKnown RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 ALLCQ8N6M5 410 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 SPATA20Q8TB22 786 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 AHCYL2Q96HN2 611 aaKnown RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 RSPH9Q9H1X1 276 aaPredicted RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 MARCH7Q9H992 704 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 E7ENX8 843 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 TOB1P50616 345 aaPredicted RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 MBTD1Q05BQ5 628 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 TBC1D16Q8TBP0 767 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 NDOR1Q9UHB4 597 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 ATF5Q9Y2D1 282 aaPredicted RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 PEX16Q9Y5Y5 336 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 MCIDASD6RGH6 385 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 ZBTB11O95625 1053 aaPredicted RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 FTH1P02794 183 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 RPL38P63173 70 aaKnown RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 GPALPP1Q8IXQ4 340 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 LEMD2Q8NC56 503 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 KIAA0895Q8NCT3 520 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 TAAR1Q96RJ0 339 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 GAKO14976 1311 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 SMCO3A2RU48 225 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 SLC22A3O75751 556 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 MAZP56270 477 aaKnown RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 TROAPQ12815 778 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 TUBB3Q13509 450 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 RBM20Q5T481 1227 aaKnown RBP13.93□□□□□ -0.18
CSPG4-201ENST00000308508 SCUBE3Q8IX30 993 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 SLC6A15Q9H2J7 730 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 ZNRF3Q9ULT6 936 aa13.93□□□□□ -0.18
CSPG4-201ENST00000308508 SLC30A4O14863 429 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 MPZL2O60487 215 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 KRT33AO76009 404 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 POLR2EP19388 210 aaKnown RBP13.92□□□□□ -0.18
CSPG4-201ENST00000308508 ROBO2Q9HCK4 1378 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 GPR180Q86V85 440 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 ADGRE2Q9UHX3 823 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 KMOO15229 486 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 CSH1P0DML2 217 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 CSH2P0DML3 217 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 ELP6Q0PNE2 266 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 THAP5Q7Z6K1 395 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 C4orf19Q8IY42 314 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 ACE2Q9BYF1 805 aaPredicted RBP13.92□□□□□ -0.18
CSPG4-201ENST00000308508 KDM6BO15054 1643 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 CLDN25C9JDP6 229 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 PSMB4P28070 264 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 DLG1Q12959 904 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 FAM98AQ8NCA5 519 aaKnown RBP13.92□□□□□ -0.18
CSPG4-201ENST00000308508 FAM151AQ8WW52 585 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 CHST7Q9NS84 486 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 SPEF1Q9Y4P9 236 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 NUMBP49757 651 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 LAMTOR4Q0VGL1 99 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 CDH19Q9H159 772 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 RSL1D1O76021 490 aaKnown RBP13.92□□□□□ -0.18
CSPG4-201ENST00000308508 SERPINA4P29622 427 aa13.92□□□□□ -0.18
CSPG4-201ENST00000308508 AFTPHQ6ULP2 937 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms