RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 RHOCP08134 193 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 CCDC166P0CW27 439 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 ATP5C1P36542 298 aaKnown RBP16.39■□□□□ 0.21
CTCF-201ENST00000264010 ALDH1A3P47895 512 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 MTTPP55157 894 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 SMARCB1Q12824 385 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 BNC2Q6ZN30 1099 aaPredicted RBP16.39■□□□□ 0.21
CTCF-201ENST00000264010 ANKS3Q6ZW76 656 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 SPATA6LQ8N4H0 392 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 EFHBQ8N7U6 833 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.39■□□□□ 0.21
CTCF-201ENST00000264010 PHF21BQ96EK2 531 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 NMRK1Q9NWW6 199 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 ARIH1Q9Y4X5 557 aaPredicted RBP16.39■□□□□ 0.21
CTCF-201ENST00000264010 SNX2O60749 519 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 IRF1P10914 325 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 YBEYP58557 167 aaPredicted RBP16.39■□□□□ 0.21
CTCF-201ENST00000264010 DAB2P98082 770 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 STX5Q13190 355 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 DCTN2Q13561 401 aaKnown RBP16.39■□□□□ 0.21
CTCF-201ENST00000264010 PARP15Q460N3 678 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 ARL13AQ5H913 290 aaPredicted RBP16.39■□□□□ 0.21
CTCF-201ENST00000264010 SH2D5Q6ZV89 423 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 ZNF280BQ86YH2 543 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 PLD6Q8N2A8 252 aaKnown RBP16.39■□□□□ 0.21
CTCF-201ENST00000264010 MAB21L3Q8N8X9 362 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 C17orf50Q8WW18 174 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 HDAC10Q969S8 669 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 PRR11Q96HE9 360 aaPredicted RBP16.39■□□□□ 0.21
CTCF-201ENST00000264010 EFHD1Q9BUP0 239 aa16.39■□□□□ 0.21
CTCF-201ENST00000264010 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.39■□□□□ 0.21
CTCF-201ENST00000264010 C2orf81A6NN90 581 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 CKBP12277 381 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 SOX11P35716 441 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 CHRNA4P43681 627 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 DSC2Q02487 901 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 KLF10Q13118 480 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 FRG1Q14331 258 aaKnown RBP16.38■□□□□ 0.21
CTCF-201ENST00000264010 TREML1Q86YW5 311 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 FSTL5Q8N475 847 aaPredicted RBP16.38■□□□□ 0.21
CTCF-201ENST00000264010 SH3GL1Q99961 368 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 OXSMQ9NWU1 459 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 TMEM161AQ9NX61 479 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 STX18Q9P2W9 335 aaKnown RBP16.38■□□□□ 0.21
CTCF-201ENST00000264010 NKX1-2Q9UD57 310 aaPredicted RBP16.38■□□□□ 0.21
CTCF-201ENST00000264010 OTOFQ9HC10 1997 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 DICER1Q9UPY3 1922 aaKnown RBP16.38■□□□□ 0.21
CTCF-201ENST00000264010 PLXNB2O15031 1838 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 HHLA1C9JL84 531 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 E5RI56 91 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 AHSGP02765 367 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 NSUN2Q08J23 767 aaKnown RBP eCLIP16.38■□□□□ 0.21
CTCF-201ENST00000264010 MSLNQ13421 630 aaPredicted RBP16.38■□□□□ 0.21
CTCF-201ENST00000264010 ACSBG2Q5FVE4 666 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 TSTD2Q5T7W7 516 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 PATL1Q86TB9 770 aaKnown RBP16.38■□□□□ 0.21
CTCF-201ENST00000264010 DDIASQ8IXT1 998 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 UTP4Q969X6 686 aaKnown RBP16.38■□□□□ 0.21
CTCF-201ENST00000264010 PRPF18Q99633 342 aaKnown RBP16.38■□□□□ 0.21
CTCF-201ENST00000264010 IL12RB2Q99665 862 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 UBA2Q9UBT2 640 aaPredicted RBP16.38■□□□□ 0.21
CTCF-201ENST00000264010 VPS9D1Q9Y2B5 631 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 CCDC159P0C7I6 412 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 HSPA8P11142 646 aaKnown RBP16.38■□□□□ 0.21
CTCF-201ENST00000264010 AOC1P19801 751 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 EPHA3P29320 983 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 TAS2R39P59534 338 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 LBRQ14739 615 aaKnown RBP16.38■□□□□ 0.21
CTCF-201ENST00000264010 TAS2R42Q7RTR8 314 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 C14orf80Q86SX3 495 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 CNTD1Q8N815 330 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 CLPTM1LQ96KA5 538 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 ZNF184Q99676 751 aaPredicted RBP16.38■□□□□ 0.21
CTCF-201ENST00000264010 CCDC90BQ9GZT6 254 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 DNMT3LQ9UJW3 386 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 ZNF232Q9UNY5 417 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 VWA7Q9Y334 891 aa16.38■□□□□ 0.21
CTCF-201ENST00000264010 RGSL1A5PLK6 1076 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 NDUFB5O43674 189 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 SELPP16109 830 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 MAP4P27816 1152 aaKnown RBP16.37■□□□□ 0.21
CTCF-201ENST00000264010 SLC1A2P43004 574 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 DUSP4Q13115 394 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 LRRC8DQ7L1W4 858 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 ATP6V1E2Q96A05 226 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 MIPEPQ99797 713 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 WDR55Q9H6Y2 383 aaPredicted RBP16.37■□□□□ 0.21
CTCF-201ENST00000264010 NMUR1Q9HB89 426 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 SARS2Q9NP81 518 aaKnown RBP16.37■□□□□ 0.21
CTCF-201ENST00000264010 SH3GLB1Q9Y371 365 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 ITGB1P05556 798 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 LINGO3P0C6S8 592 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 TFEBP19484 476 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 HLA-DPA1P20036 260 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 TRPC1P48995 793 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 PLK1P53350 603 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 OCA2Q04671 838 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 FLOT2Q14254 428 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 FLCNQ8NFG4 579 aa16.37■□□□□ 0.21
CTCF-201ENST00000264010 PSMG2Q969U7 264 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 222.1 ms