RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 CARD14Q9BXL6 1004 aa25.21■■□□□ 1.63
CLN3-259ENST00000637551 SPATA31A5Q5VU36 1347 aa25.2■■□□□ 1.62
CLN3-259ENST00000637551 SPATA31A7Q8IWB4 1347 aa25.2■■□□□ 1.62
CLN3-259ENST00000637551 PLEKHG5O94827 1062 aa25.2■■□□□ 1.62
CLN3-259ENST00000637551 DEFB132Q7Z7B7 95 aa25.2■■□□□ 1.62
CLN3-259ENST00000637551 RTL1A6NKG5 1358 aa25.19■■□□□ 1.62
CLN3-259ENST00000637551 C11orf95C9JLR9 678 aaPredicted RBP25.19■■□□□ 1.62
CLN3-259ENST00000637551 FAM208AQ9UK61 1670 aaKnown RBP25.19■■□□□ 1.62
CLN3-259ENST00000637551 CCDC7Q96M83 1385 aa25.18■■□□□ 1.62
CLN3-259ENST00000637551 CHRNA2Q15822 529 aa25.18■■□□□ 1.62
CLN3-259ENST00000637551 THSD7AQ9UPZ6 1657 aa25.17■■□□□ 1.62
CLN3-259ENST00000637551 THRAP3Q9Y2W1 955 aaKnown RBP25.17■■□□□ 1.62
CLN3-259ENST00000637551 CRB1P82279 1406 aa25.17■■□□□ 1.62
CLN3-259ENST00000637551 SPATA31A1Q5TZJ5 1347 aa25.15■■□□□ 1.62
CLN3-259ENST00000637551 WDR17Q8IZU2 1322 aa25.14■■□□□ 1.62
CLN3-259ENST00000637551 RGPD5Q99666 1765 aa25.14■■□□□ 1.62
CLN3-259ENST00000637551 BARGINQ6ZT62 677 aa25.14■■□□□ 1.62
CLN3-259ENST00000637551 PANK3Q9H999 370 aa25.14■■□□□ 1.62
CLN3-259ENST00000637551 EVA1CP58658 441 aa25.13■■□□□ 1.61
CLN3-259ENST00000637551 POLR3GLQ9BT43 218 aa25.13■■□□□ 1.61
CLN3-259ENST00000637551 BRWD3Q6RI45 1802 aa25.12■■□□□ 1.61
CLN3-259ENST00000637551 WASHC2AQ641Q2 1341 aa25.12■■□□□ 1.61
CLN3-259ENST00000637551 NPC1L1Q9UHC9 1359 aa25.11■■□□□ 1.61
CLN3-259ENST00000637551 SF3B2Q13435 895 aaKnown RBP25.11■■□□□ 1.61
CLN3-259ENST00000637551 GGNBP2Q9H3C7 697 aa25.11■■□□□ 1.61
CLN3-259ENST00000637551 CCDC9Q9Y3X0 531 aaKnown RBP25.11■■□□□ 1.61
CLN3-259ENST00000637551 WNK3Q9BYP7 1800 aa25.1■■□□□ 1.61
CLN3-259ENST00000637551 IP6K1Q92551 441 aa25.1■■□□□ 1.61
CLN3-259ENST00000637551 ERBB3P21860 1342 aa25.1■■□□□ 1.61
CLN3-259ENST00000637551 PARP4Q9UKK3 1724 aaKnown RBP25.09■■□□□ 1.61
CLN3-259ENST00000637551 KNSTRNQ9Y448 316 aa25.09■■□□□ 1.61
CLN3-259ENST00000637551 TCP11L2Q8N4U5 519 aa25.08■■□□□ 1.61
CLN3-259ENST00000637551 STRN4Q9NRL3 753 aa25.08■■□□□ 1.61
CLN3-259ENST00000637551 AXIN2Q9Y2T1 843 aa25.08■■□□□ 1.61
CLN3-259ENST00000637551 CDCA7Q9BWT1 371 aaPredicted RBP25.07■■□□□ 1.6
CLN3-259ENST00000637551 MAP3K19Q56UN5 1328 aa25.07■■□□□ 1.6
CLN3-259ENST00000637551 FLT4P35916 1363 aa25.06■■□□□ 1.6
CLN3-259ENST00000637551 LARP1Q6PKG0 1096 aaKnown RBP25.06■■□□□ 1.6
CLN3-259ENST00000637551 SEPT12Q8IYM1 358 aa25.06■■□□□ 1.6
CLN3-259ENST00000637551 CARD10Q9BWT7 1032 aa25.06■■□□□ 1.6
CLN3-259ENST00000637551 SOX12O15370 315 aa25.05■■□□□ 1.6
CLN3-259ENST00000637551 MAP2P11137 1827 aaKnown RBP25.05■■□□□ 1.6
CLN3-259ENST00000637551 SMG6Q86US8 1419 aaKnown RBP25.03■■□□□ 1.6
CLN3-259ENST00000637551 PSDA5PKW4 1024 aaPredicted RBP25.03■■□□□ 1.6
CLN3-259ENST00000637551 PER1O15534 1290 aaPredicted RBP25.03■■□□□ 1.6
CLN3-259ENST00000637551 HOXC9P31274 260 aa25.02■■□□□ 1.6
CLN3-259ENST00000637551 FAM98CQ17RN3 349 aaKnown RBP25.02■■□□□ 1.6
CLN3-259ENST00000637551 AMER1Q5JTC6 1135 aaPredicted RBP25.02■■□□□ 1.6
CLN3-259ENST00000637551 INSRP06213 1382 aa25.02■■□□□ 1.6
CLN3-259ENST00000637551 ZBTB7CA1YPR0 619 aa25.01■■□□□ 1.59
CLN3-259ENST00000637551 TOM1L2Q6ZVM7 507 aa25.01■■□□□ 1.59
CLN3-259ENST00000637551 AMPHP49418 695 aa25■■□□□ 1.59
CLN3-259ENST00000637551 PEAK1Q9H792 1746 aa25■■□□□ 1.59
CLN3-259ENST00000637551 DISP2A7MBM2 1401 aa24.99■■□□□ 1.59
CLN3-259ENST00000637551 KRT27Q7Z3Y8 459 aa24.99■■□□□ 1.59
CLN3-259ENST00000637551 CSB-PGBD3P0DP91 1061 aa24.98■■□□□ 1.59
CLN3-259ENST00000637551 ANKRD24Q8TF21 1146 aa24.98■■□□□ 1.59
CLN3-259ENST00000637551 LRRC37A3O60309 1634 aa24.97■■□□□ 1.59
CLN3-259ENST00000637551 PLEKHG2Q9H7P9 1386 aa24.96■■□□□ 1.59
CLN3-259ENST00000637551 BAG6P46379 1132 aa24.96■■□□□ 1.59
CLN3-259ENST00000637551 RRS1Q15050 365 aaKnown RBP24.95■■□□□ 1.58
CLN3-259ENST00000637551 BCL9O00512 1426 aa24.94■■□□□ 1.58
CLN3-259ENST00000637551 NCAPD2Q15021 1401 aa24.93■■□□□ 1.58
CLN3-259ENST00000637551 MORC1Q86VD1 984 aa24.92■■□□□ 1.58
CLN3-259ENST00000637551 USP35Q9P2H5 1018 aa24.92■■□□□ 1.58
CLN3-259ENST00000637551 POLKQ9UBT6 870 aa24.92■■□□□ 1.58
CLN3-259ENST00000637551 A0A0G2JS52 829 aa24.91■■□□□ 1.58
CLN3-259ENST00000637551 MYT1Q01538 1121 aa24.91■■□□□ 1.58
CLN3-259ENST00000637551 TNS2Q63HR2 1409 aa24.91■■□□□ 1.58
CLN3-259ENST00000637551 NLRP2Q9NX02 1062 aa24.9■■□□□ 1.58
CLN3-259ENST00000637551 EMILIN1Q9Y6C2 1016 aa24.89■■□□□ 1.58
CLN3-259ENST00000637551 RGPD1P0DJD0 1748 aa24.88■■□□□ 1.57
CLN3-259ENST00000637551 IL2RBP14784 551 aa24.87■■□□□ 1.57
CLN3-259ENST00000637551 FBLN1P23142 703 aa24.87■■□□□ 1.57
CLN3-259ENST00000637551 PDE3BQ13370 1112 aa24.87■■□□□ 1.57
CLN3-259ENST00000637551 DDB1Q16531 1140 aa24.87■■□□□ 1.57
CLN3-259ENST00000637551 RGPD2P0DJD1 1756 aa24.87■■□□□ 1.57
CLN3-259ENST00000637551 OVOS2A0A0G2JMS6 1433 aa24.86■■□□□ 1.57
CLN3-259ENST00000637551 EN1Q05925 392 aaPredicted RBP24.86■■□□□ 1.57
CLN3-259ENST00000637551 HSP90AB2PQ58FF8 381 aa24.86■■□□□ 1.57
CLN3-259ENST00000637551 FAM196AQ6ZSG2 479 aa24.86■■□□□ 1.57
CLN3-259ENST00000637551 R3HDM1Q15032 1099 aaKnown RBP24.85■■□□□ 1.57
CLN3-259ENST00000637551 EXOC5O00471 708 aa24.81■■□□□ 1.56
CLN3-259ENST00000637551 SBF2Q86WG5 1849 aa24.79■■□□□ 1.56
CLN3-259ENST00000637551 TNS1Q9HBL0 1735 aaKnown RBP24.79■■□□□ 1.56
CLN3-259ENST00000637551 NBPF6Q5VWK0 638 aa24.79■■□□□ 1.56
CLN3-259ENST00000637551 LTV1Q96GA3 475 aaPredicted RBP24.79■■□□□ 1.56
CLN3-259ENST00000637551 NBPF4Q96M43 638 aa24.79■■□□□ 1.56
CLN3-259ENST00000637551 PKD1L3Q7Z443 1732 aa24.78■■□□□ 1.56
CLN3-259ENST00000637551 PPM1GO15355 546 aaPredicted RBP24.78■■□□□ 1.56
CLN3-259ENST00000637551 YY1P25490 414 aa24.78■■□□□ 1.56
CLN3-259ENST00000637551 TNNT2P45379 298 aaPredicted RBP24.78■■□□□ 1.56
CLN3-259ENST00000637551 RGPD3A6NKT7 1758 aaPredicted RBP24.77■■□□□ 1.56
CLN3-259ENST00000637551 RGPD4Q7Z3J3 1758 aa24.77■■□□□ 1.56
CLN3-259ENST00000637551 CC2D1BQ5T0F9 858 aaKnown RBP24.77■■□□□ 1.56
CLN3-259ENST00000637551 MEGF6O75095 1541 aa24.76■■□□□ 1.55
CLN3-259ENST00000637551 SHANK3Q9BYB0 1731 aa24.76■■□□□ 1.55
CLN3-259ENST00000637551 RAPGEF4Q8WZA2 1011 aa24.76■■□□□ 1.55
CLN3-259ENST00000637551 IGSF1Q8N6C5 1336 aa24.76■■□□□ 1.55
CLN3-259ENST00000637551 EIF4A2Q14240 407 aaKnown RBP24.75■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms