RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 WNK3Q9BYP7 1800 aa21.57■■□□□ 1.04
CLN3-249ENST00000636685 ZBTB7CA1YPR0 619 aa21.57■■□□□ 1.04
CLN3-249ENST00000636685 GCP02774 474 aa21.57■■□□□ 1.04
CLN3-249ENST00000636685 MARCH10Q8NA82 808 aaPredicted RBP21.57■■□□□ 1.04
CLN3-249ENST00000636685 CDK19Q9BWU1 502 aa21.56■■□□□ 1.04
CLN3-249ENST00000636685 ARXQ96QS3 562 aa21.55■■□□□ 1.04
CLN3-249ENST00000636685 GPR162Q16538 588 aa21.53■■□□□ 1.04
CLN3-249ENST00000636685 NLRP13Q86W25 1043 aa21.53■■□□□ 1.04
CLN3-249ENST00000636685 KDM2AQ9Y2K7 1162 aa21.53■■□□□ 1.04
CLN3-249ENST00000636685 PLEKHG3A1L390 1219 aa21.52■■□□□ 1.04
CLN3-249ENST00000636685 TOM1L2Q6ZVM7 507 aa21.52■■□□□ 1.04
CLN3-249ENST00000636685 MAP3K5Q99683 1374 aa21.51■■□□□ 1.03
CLN3-249ENST00000636685 CCDC61Q9Y6R9 512 aa21.51■■□□□ 1.03
CLN3-249ENST00000636685 BCL9O00512 1426 aa21.51■■□□□ 1.03
CLN3-249ENST00000636685 SHANK3Q9BYB0 1731 aa21.49■■□□□ 1.03
CLN3-249ENST00000636685 AATKQ6ZMQ8 1374 aa21.48■■□□□ 1.03
CLN3-249ENST00000636685 COL18A1P39060 1754 aa21.48■■□□□ 1.03
CLN3-249ENST00000636685 GOLGB1Q14789 3259 aaKnown RBP21.48■■□□□ 1.03
CLN3-249ENST00000636685 DCAF11Q8TEB1 546 aa21.46■■□□□ 1.03
CLN3-249ENST00000636685 PELP1Q8IZL8 1130 aaKnown RBP21.45■■□□□ 1.02
CLN3-249ENST00000636685 RGPD5Q99666 1765 aa21.45■■□□□ 1.02
CLN3-249ENST00000636685 PAPPAQ13219 1627 aa21.44■■□□□ 1.02
CLN3-249ENST00000636685 KLHL34Q8N239 644 aa21.44■■□□□ 1.02
CLN3-249ENST00000636685 CDCA7Q9BWT1 371 aaPredicted RBP21.44■■□□□ 1.02
CLN3-249ENST00000636685 AXIN2Q9Y2T1 843 aa21.44■■□□□ 1.02
CLN3-249ENST00000636685 WDR17Q8IZU2 1322 aa21.44■■□□□ 1.02
CLN3-249ENST00000636685 SLIT3O75094 1523 aa21.43■■□□□ 1.02
CLN3-249ENST00000636685 NLRP6P59044 892 aa21.42■■□□□ 1.02
CLN3-249ENST00000636685 NHSQ6T4R5 1651 aa21.42■■□□□ 1.02
CLN3-249ENST00000636685 KAT6BQ8WYB5 2073 aa21.41■■□□□ 1.02
CLN3-249ENST00000636685 PPIP5K1Q6PFW1 1433 aa21.4■■□□□ 1.02
CLN3-249ENST00000636685 ZNF827Q17R98 1081 aa21.4■■□□□ 1.02
CLN3-249ENST00000636685 EXOC5O00471 708 aa21.39■■□□□ 1.01
CLN3-249ENST00000636685 ACSBG1Q96GR2 724 aa21.39■■□□□ 1.01
CLN3-249ENST00000636685 CARD10Q9BWT7 1032 aa21.38■■□□□ 1.01
CLN3-249ENST00000636685 BTAF1O14981 1849 aa21.37■■□□□ 1.01
CLN3-249ENST00000636685 CSB-PGBD3P0DP91 1061 aa21.36■■□□□ 1.01
CLN3-249ENST00000636685 NLGN2Q8NFZ4 835 aa21.36■■□□□ 1.01
CLN3-249ENST00000636685 PIK3C2AO00443 1686 aa21.36■■□□□ 1.01
CLN3-249ENST00000636685 BRD4O60885 1362 aaPredicted RBP21.36■■□□□ 1.01
CLN3-249ENST00000636685 COL24A1Q17RW2 1714 aa21.35■■□□□ 1.01
CLN3-249ENST00000636685 SRPK2P78362 688 aaKnown RBP21.35■■□□□ 1.01
CLN3-249ENST00000636685 CPSF1Q10570 1443 aaKnown RBP21.35■■□□□ 1.01
CLN3-249ENST00000636685 TNS2Q63HR2 1409 aa21.35■■□□□ 1.01
CLN3-249ENST00000636685 CABP2Q9NPB3 220 aa21.34■■□□□ 1.01
CLN3-249ENST00000636685 LRRC4BQ9NT99 713 aa21.34■■□□□ 1.01
CLN3-249ENST00000636685 USP6P35125 1406 aa21.34■■□□□ 1.01
CLN3-249ENST00000636685 QSER1Q2KHR3 1735 aa21.33■■□□□ 1.01
CLN3-249ENST00000636685 POLD1P28340 1107 aa21.33■■□□□ 1.01
CLN3-249ENST00000636685 YBX3P16989 372 aaKnown RBP eCLIP21.32■■□□□ 1
CLN3-249ENST00000636685 ARHGEF25Q86VW2 580 aa21.32■■□□□ 1
CLN3-249ENST00000636685 STAC3Q96MF2 364 aa21.32■■□□□ 1
CLN3-249ENST00000636685 ATP10DQ9P241 1426 aa21.31■■□□□ 1
CLN3-249ENST00000636685 TRPM1Q7Z4N2 1603 aa21.31■■□□□ 1
CLN3-249ENST00000636685 SOX12O15370 315 aa21.31■■□□□ 1
CLN3-249ENST00000636685 TUBGCP6Q96RT7 1819 aa21.31■■□□□ 1
CLN3-249ENST00000636685 SLC16A10Q8TF71 515 aa21.3■■□□□ 1
CLN3-249ENST00000636685 AKT1S1Q96B36 256 aa21.3■■□□□ 1
CLN3-249ENST00000636685 CABP1Q9NZU7 370 aa21.3■■□□□ 1
CLN3-249ENST00000636685 CCDC7Q96M83 1385 aa21.29■■□□□ 1
CLN3-249ENST00000636685 GRIN3BO60391 1043 aa21.28■■□□□ 1
CLN3-249ENST00000636685 HSPA6P17066 643 aa21.28■■□□□ 1
CLN3-249ENST00000636685 ABCC6O95255 1503 aa21.28■■□□□ 1
CLN3-249ENST00000636685 PNPLA7Q6ZV29 1317 aa21.28■■□□□ 1
CLN3-249ENST00000636685 QRICH2Q9H0J4 1663 aa21.28■■□□□ 1
CLN3-249ENST00000636685 GPBP1L1Q9HC44 474 aaPredicted RBP21.25■□□□□ 0.99
CLN3-249ENST00000636685 KIAA1210Q9ULL0 1709 aa21.24■□□□□ 0.99
CLN3-249ENST00000636685 KCNH5Q8NCM2 988 aa21.23■□□□□ 0.99
CLN3-249ENST00000636685 NBPF1Q3BBV0 1214 aa21.22■□□□□ 0.99
CLN3-249ENST00000636685 ZNF526Q8TF50 670 aaPredicted RBP21.22■□□□□ 0.99
CLN3-249ENST00000636685 TFCP2L1Q9NZI6 479 aa21.22■□□□□ 0.99
CLN3-249ENST00000636685 NFAT5O94916 1531 aa21.22■□□□□ 0.99
CLN3-249ENST00000636685 CENPJQ9HC77 1338 aaPredicted RBP21.22■□□□□ 0.99
CLN3-249ENST00000636685 KCNQ4P56696 695 aa21.21■□□□□ 0.99
CLN3-249ENST00000636685 TTC21BQ7Z4L5 1316 aa21.21■□□□□ 0.99
CLN3-249ENST00000636685 SLC27A3Q5K4L6 730 aa21.2■□□□□ 0.98
CLN3-249ENST00000636685 RAB3GAP2Q9H2M9 1393 aa21.2■□□□□ 0.98
CLN3-249ENST00000636685 NLRP2Q9NX02 1062 aa21.19■□□□□ 0.98
CLN3-249ENST00000636685 IL2RBP14784 551 aa21.18■□□□□ 0.98
CLN3-249ENST00000636685 ADCY9O60503 1353 aa21.17■□□□□ 0.98
CLN3-249ENST00000636685 ERBB3P21860 1342 aa21.14■□□□□ 0.97
CLN3-249ENST00000636685 LY75O60449 1722 aa21.14■□□□□ 0.97
CLN3-249ENST00000636685 MSH5O43196 834 aa21.13■□□□□ 0.97
CLN3-249ENST00000636685 MSL1Q68DK7 614 aa21.13■□□□□ 0.97
CLN3-249ENST00000636685 LTN1O94822 1766 aa21.13■□□□□ 0.97
CLN3-249ENST00000636685 TTC21AQ8NDW8 1320 aa21.12■□□□□ 0.97
CLN3-249ENST00000636685 COL23A1Q86Y22 540 aaPredicted RBP21.11■□□□□ 0.97
CLN3-249ENST00000636685 DDX54Q8TDD1 881 aaKnown RBP21.11■□□□□ 0.97
CLN3-249ENST00000636685 ZNF692Q9BU19 519 aaPredicted RBP21.11■□□□□ 0.97
CLN3-249ENST00000636685 ANKRD24Q8TF21 1146 aa21.09■□□□□ 0.97
CLN3-249ENST00000636685 SYTL4Q96C24 671 aaPredicted RBP21.09■□□□□ 0.97
CLN3-249ENST00000636685 DOT1LQ8TEK3 1739 aa21.09■□□□□ 0.97
CLN3-249ENST00000636685 KIF3CO14782 793 aa21.08■□□□□ 0.97
CLN3-249ENST00000636685 PRIM1P49642 420 aaKnown RBP21.08■□□□□ 0.97
CLN3-249ENST00000636685 EVC2Q86UK5 1308 aa21.07■□□□□ 0.96
CLN3-249ENST00000636685 CD2APQ9Y5K6 639 aa21.07■□□□□ 0.96
CLN3-249ENST00000636685 CCNL1Q9UK58 526 aaPredicted RBP21.06■□□□□ 0.96
CLN3-249ENST00000636685 APLP1P51693 650 aa21.05■□□□□ 0.96
CLN3-249ENST00000636685 WWC3Q9ULE0 1092 aa21.05■□□□□ 0.96
CLN3-249ENST00000636685 NSD2O96028 1365 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms