RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 ADAMTS8Q9UP79 889 aa23.77■■□□□ 1.4
PTCHD3-202ENST00000622555 U2SURPO15042 1029 aaKnown RBP23.76■■□□□ 1.39
PTCHD3-202ENST00000622555 IP6K1Q92551 441 aa23.76■■□□□ 1.39
PTCHD3-202ENST00000622555 IL13P35225 146 aa23.74■■□□□ 1.39
PTCHD3-202ENST00000622555 RGPD5Q99666 1765 aa23.74■■□□□ 1.39
PTCHD3-202ENST00000622555 CPDO75976 1380 aa23.73■■□□□ 1.39
PTCHD3-202ENST00000622555 KIAA0232Q92628 1395 aa23.73■■□□□ 1.39
PTCHD3-202ENST00000622555 U2AF1L5P0DN76 240 aaPredicted RBP23.73■■□□□ 1.39
PTCHD3-202ENST00000622555 U2AF1Q01081 240 aaKnown RBP eCLIP23.73■■□□□ 1.39
PTCHD3-202ENST00000622555 EIF4A2Q14240 407 aaKnown RBP23.73■■□□□ 1.39
PTCHD3-202ENST00000622555 COL18A1P39060 1754 aa23.71■■□□□ 1.39
PTCHD3-202ENST00000622555 BLMP54132 1417 aaPredicted RBP23.7■■□□□ 1.38
PTCHD3-202ENST00000622555 ABCC6O95255 1503 aa23.7■■□□□ 1.38
PTCHD3-202ENST00000622555 CHRNA2Q15822 529 aa23.7■■□□□ 1.38
PTCHD3-202ENST00000622555 LTV1Q96GA3 475 aaPredicted RBP23.7■■□□□ 1.38
PTCHD3-202ENST00000622555 PRDM11Q9NQV5 511 aa23.7■■□□□ 1.38
PTCHD3-202ENST00000622555 RGPD1P0DJD0 1748 aa23.68■■□□□ 1.38
PTCHD3-202ENST00000622555 JCADQ9P266 1359 aa23.68■■□□□ 1.38
PTCHD3-202ENST00000622555 HSPA1LP34931 641 aa23.67■■□□□ 1.38
PTCHD3-202ENST00000622555 HNRNPUQ00839 825 aaKnown RBP eCLIP23.67■■□□□ 1.38
PTCHD3-202ENST00000622555 AXIN2Q9Y2T1 843 aa23.67■■□□□ 1.38
PTCHD3-202ENST00000622555 CCDC146Q8IYE0 955 aa23.67■■□□□ 1.38
PTCHD3-202ENST00000622555 RGPD2P0DJD1 1756 aa23.65■■□□□ 1.38
PTCHD3-202ENST00000622555 LMO7Q8WWI1 1683 aa23.64■■□□□ 1.38
PTCHD3-202ENST00000622555 HMOX1P09601 288 aa23.64■■□□□ 1.37
PTCHD3-202ENST00000622555 ANKRD24Q8TF21 1146 aa23.64■■□□□ 1.37
PTCHD3-202ENST00000622555 NUTM2BA6NNL0 878 aaPredicted RBP23.63■■□□□ 1.37
PTCHD3-202ENST00000622555 NUTM2EB1AL46 878 aaPredicted RBP23.63■■□□□ 1.37
PTCHD3-202ENST00000622555 NUTM2AQ8IVF1 878 aaPredicted RBP23.63■■□□□ 1.37
PTCHD3-202ENST00000622555 EYA1Q99502 592 aa23.62■■□□□ 1.37
PTCHD3-202ENST00000622555 COL14A1Q05707 1796 aaKnown RBP23.62■■□□□ 1.37
PTCHD3-202ENST00000622555 SENP3-EIF4A1A0A087X0R7 540 aa23.62■■□□□ 1.37
PTCHD3-202ENST00000622555 FCHSD2O94868 740 aa23.62■■□□□ 1.37
PTCHD3-202ENST00000622555 FAM83GA6ND36 823 aa23.61■■□□□ 1.37
PTCHD3-202ENST00000622555 SULT6B1Q6IMI4 303 aa23.61■■□□□ 1.37
PTCHD3-202ENST00000622555 RUNDC1Q96C34 613 aa23.61■■□□□ 1.37
PTCHD3-202ENST00000622555 PNNQ9H307 717 aaKnown RBP23.61■■□□□ 1.37
PTCHD3-202ENST00000622555 ERBB3P21860 1342 aa23.61■■□□□ 1.37
PTCHD3-202ENST00000622555 IGSF1Q8N6C5 1336 aa23.61■■□□□ 1.37
PTCHD3-202ENST00000622555 CAMTA1Q9Y6Y1 1673 aa23.6■■□□□ 1.37
PTCHD3-202ENST00000622555 RSPH6AQ9H0K4 717 aa23.6■■□□□ 1.37
PTCHD3-202ENST00000622555 FAM208AQ9UK61 1670 aaKnown RBP23.6■■□□□ 1.37
PTCHD3-202ENST00000622555 ADAMTS2O95450 1211 aa23.59■■□□□ 1.37
PTCHD3-202ENST00000622555 AEBP1Q8IUX7 1158 aa23.59■■□□□ 1.37
PTCHD3-202ENST00000622555 PRKAR2BP31323 418 aa23.59■■□□□ 1.37
PTCHD3-202ENST00000622555 CSB-PGBD3P0DP91 1061 aa23.58■■□□□ 1.37
PTCHD3-202ENST00000622555 PLEKHF1Q96S99 279 aa23.58■■□□□ 1.37
PTCHD3-202ENST00000622555 NBPF6Q5VWK0 638 aa23.57■■□□□ 1.36
PTCHD3-202ENST00000622555 NBPF4Q96M43 638 aa23.57■■□□□ 1.36
PTCHD3-202ENST00000622555 MAPK8IP3Q9UPT6 1336 aa23.57■■□□□ 1.36
PTCHD3-202ENST00000622555 APAF1O14727 1248 aa23.56■■□□□ 1.36
PTCHD3-202ENST00000622555 USHBP1Q8N6Y0 703 aa23.56■■□□□ 1.36
PTCHD3-202ENST00000622555 SPATA31A6Q5VVP1 1343 aa23.56■■□□□ 1.36
PTCHD3-202ENST00000622555 PLCH1Q4KWH8 1693 aa23.56■■□□□ 1.36
PTCHD3-202ENST00000622555 COL5A2P05997 1499 aaPredicted RBP23.56■■□□□ 1.36
PTCHD3-202ENST00000622555 KDRP35968 1356 aa23.56■■□□□ 1.36
PTCHD3-202ENST00000622555 NEFMP07197 916 aa23.56■■□□□ 1.36
PTCHD3-202ENST00000622555 NLRP2Q9NX02 1062 aa23.54■■□□□ 1.36
PTCHD3-202ENST00000622555 SALL2Q9Y467 1007 aaPredicted RBP23.54■■□□□ 1.36
PTCHD3-202ENST00000622555 TCP11L2Q8N4U5 519 aa23.53■■□□□ 1.36
PTCHD3-202ENST00000622555 BTG4Q9NY30 223 aa23.53■■□□□ 1.36
PTCHD3-202ENST00000622555 ZBED9Q6R2W3 1325 aa23.53■■□□□ 1.36
PTCHD3-202ENST00000622555 WDR17Q8IZU2 1322 aa23.52■■□□□ 1.36
PTCHD3-202ENST00000622555 EVA1CP58658 441 aa23.52■■□□□ 1.36
PTCHD3-202ENST00000622555 STRN4Q9NRL3 753 aa23.52■■□□□ 1.36
PTCHD3-202ENST00000622555 NCAPD2Q15021 1401 aa23.51■■□□□ 1.35
PTCHD3-202ENST00000622555 LRP6O75581 1613 aa23.5■■□□□ 1.35
PTCHD3-202ENST00000622555 PHACTR3Q96KR7 559 aa23.5■■□□□ 1.35
PTCHD3-202ENST00000622555 RRP7AQ9Y3A4 280 aaKnown RBP23.5■■□□□ 1.35
PTCHD3-202ENST00000622555 NEUROD2Q15784 382 aa23.49■■□□□ 1.35
PTCHD3-202ENST00000622555 TOM1L2Q6ZVM7 507 aa23.49■■□□□ 1.35
PTCHD3-202ENST00000622555 NWD2Q9ULI1 1742 aa23.49■■□□□ 1.35
PTCHD3-202ENST00000622555 NRAPQ86VF7 1730 aa23.48■■□□□ 1.35
PTCHD3-202ENST00000622555 TMPOP42166 694 aaKnown RBP23.47■■□□□ 1.35
PTCHD3-202ENST00000622555 LARP1Q6PKG0 1096 aaKnown RBP23.47■■□□□ 1.35
PTCHD3-202ENST00000622555 FBXO41Q8TF61 875 aa23.47■■□□□ 1.35
PTCHD3-202ENST00000622555 DLG5Q8TDM6 1919 aa23.46■■□□□ 1.35
PTCHD3-202ENST00000622555 NGEFQ8N5V2 710 aa23.46■■□□□ 1.35
PTCHD3-202ENST00000622555 C8orf37Q96NL8 207 aa23.46■■□□□ 1.35
PTCHD3-202ENST00000622555 SLIT2O94813 1529 aa23.45■■□□□ 1.34
PTCHD3-202ENST00000622555 NFE2L2Q16236 605 aa23.45■■□□□ 1.34
PTCHD3-202ENST00000622555 MEX3CQ5U5Q3 659 aaKnown RBP23.44■■□□□ 1.34
PTCHD3-202ENST00000622555 NGLY1Q96IV0 654 aa23.44■■□□□ 1.34
PTCHD3-202ENST00000622555 CRB1P82279 1406 aa23.44■■□□□ 1.34
PTCHD3-202ENST00000622555 RIPK4P57078 832 aa23.43■■□□□ 1.34
PTCHD3-202ENST00000622555 CARD10Q9BWT7 1032 aa23.43■■□□□ 1.34
PTCHD3-202ENST00000622555 RAPGEF4Q8WZA2 1011 aa23.42■■□□□ 1.34
PTCHD3-202ENST00000622555 NCBP3Q53F19 620 aaKnown RBP23.41■■□□□ 1.34
PTCHD3-202ENST00000622555 MTHFSDQ2M296 383 aaKnown RBP23.4■■□□□ 1.34
PTCHD3-202ENST00000622555 CCDC27Q2M243 656 aa23.39■■□□□ 1.34
PTCHD3-202ENST00000622555 WWC1Q8IX03 1113 aa23.39■■□□□ 1.34
PTCHD3-202ENST00000622555 GAS2L2Q8NHY3 880 aa23.39■■□□□ 1.34
PTCHD3-202ENST00000622555 MEGF6O75095 1541 aa23.39■■□□□ 1.33
PTCHD3-202ENST00000622555 PARP4Q9UKK3 1724 aaKnown RBP23.39■■□□□ 1.33
PTCHD3-202ENST00000622555 TATP17735 454 aaPredicted RBP23.39■■□□□ 1.33
PTCHD3-202ENST00000622555 USP35Q9P2H5 1018 aa23.39■■□□□ 1.33
PTCHD3-202ENST00000622555 ZNF521Q96K83 1311 aa23.39■■□□□ 1.33
PTCHD3-202ENST00000622555 PLEKHO1Q53GL0 409 aaPredicted RBP23.38■■□□□ 1.33
PTCHD3-202ENST00000622555 UNC5CLQ8IV45 518 aa23.37■■□□□ 1.33
PTCHD3-202ENST00000622555 PHF23Q9BUL5 403 aaPredicted RBP23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms