RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 WDR63Q8IWG1 891 aa13.47□□□□□ -0.25
UPF3A-212ENST00000619079 RBM33Q96EV2 1170 aaKnown RBP13.47□□□□□ -0.25
UPF3A-212ENST00000619079 ZNF500O60304 480 aaPredicted RBP13.47□□□□□ -0.25
UPF3A-212ENST00000619079 KLHL40Q2TBA0 621 aa13.47□□□□□ -0.25
UPF3A-212ENST00000619079 CLEC17AQ6ZS10 378 aa13.47□□□□□ -0.25
UPF3A-212ENST00000619079 C14orf37Q86TY3 774 aa13.47□□□□□ -0.25
UPF3A-212ENST00000619079 PROSER2Q86WR7 435 aaPredicted RBP13.47□□□□□ -0.25
UPF3A-212ENST00000619079 PTPRUQ92729 1446 aa13.46□□□□□ -0.25
UPF3A-212ENST00000619079 YTHDC2Q9H6S0 1430 aaKnown RBP13.46□□□□□ -0.25
UPF3A-212ENST00000619079 MCM5P33992 734 aa13.45□□□□□ -0.26
UPF3A-212ENST00000619079 DYNC1I1O14576 645 aa13.45□□□□□ -0.26
UPF3A-212ENST00000619079 SAFB2Q14151 953 aaKnown RBP eCLIP13.45□□□□□ -0.26
UPF3A-212ENST00000619079 FAM13BQ9NYF5 915 aa13.45□□□□□ -0.26
UPF3A-212ENST00000619079 NOL7Q9UMY1 257 aaKnown RBP13.45□□□□□ -0.26
UPF3A-212ENST00000619079 NCBP3Q53F19 620 aaKnown RBP13.44□□□□□ -0.26
UPF3A-212ENST00000619079 CT47B1P0C2W7 299 aaPredicted RBP13.44□□□□□ -0.26
UPF3A-212ENST00000619079 RBM10P98175 930 aaKnown RBP13.44□□□□□ -0.26
UPF3A-212ENST00000619079 ZKSCAN2Q63HK3 967 aa13.44□□□□□ -0.26
UPF3A-212ENST00000619079 FTSJ3Q8IY81 847 aaKnown RBP13.44□□□□□ -0.26
UPF3A-212ENST00000619079 PHF23Q9BUL5 403 aaPredicted RBP13.44□□□□□ -0.26
UPF3A-212ENST00000619079 SETD1AO15047 1707 aaKnown RBP13.43□□□□□ -0.26
UPF3A-212ENST00000619079 ZNF445P59923 1031 aa13.43□□□□□ -0.26
UPF3A-212ENST00000619079 RUNDC1Q96C34 613 aa13.43□□□□□ -0.26
UPF3A-212ENST00000619079 R3HCC1Q9Y3T6 440 aaKnown RBP13.43□□□□□ -0.26
UPF3A-212ENST00000619079 ADGRB1O14514 1584 aa13.43□□□□□ -0.26
UPF3A-212ENST00000619079 CCDC27Q2M243 656 aa13.43□□□□□ -0.26
UPF3A-212ENST00000619079 IQSEC2Q5JU85 1478 aa13.43□□□□□ -0.26
UPF3A-212ENST00000619079 WAPLQ7Z5K2 1190 aa13.42□□□□□ -0.26
UPF3A-212ENST00000619079 DZIP1LQ8IYY4 767 aaKnown RBP13.42□□□□□ -0.26
UPF3A-212ENST00000619079 PRAM1Q96QH2 718 aa13.42□□□□□ -0.26
UPF3A-212ENST00000619079 DDX49Q9Y6V7 483 aaKnown RBP13.42□□□□□ -0.26
UPF3A-212ENST00000619079 ABCC11Q96J66 1382 aa13.42□□□□□ -0.26
UPF3A-212ENST00000619079 ROBO2Q9HCK4 1378 aa13.42□□□□□ -0.26
UPF3A-212ENST00000619079 KIAA1210Q9ULL0 1709 aa13.42□□□□□ -0.26
UPF3A-212ENST00000619079 UQCRHLA0A096LP55 91 aa13.42□□□□□ -0.26
UPF3A-212ENST00000619079 UQCRHP07919 91 aa13.42□□□□□ -0.26
UPF3A-212ENST00000619079 DDX19BQ9UMR2 479 aa13.41□□□□□ -0.26
UPF3A-212ENST00000619079 TMEM94Q12767 1356 aa13.41□□□□□ -0.26
UPF3A-212ENST00000619079 K7ELQ4 463 aaPredicted RBP13.41□□□□□ -0.26
UPF3A-212ENST00000619079 CHD2O14647 1828 aaKnown RBP13.41□□□□□ -0.26
UPF3A-212ENST00000619079 CPS1P31327 1500 aa13.41□□□□□ -0.26
UPF3A-212ENST00000619079 KIF16BQ96L93 1317 aa13.41□□□□□ -0.26
UPF3A-212ENST00000619079 NWD1Q149M9 1564 aa13.4□□□□□ -0.26
UPF3A-212ENST00000619079 PDLIM2Q96JY6 352 aa13.4□□□□□ -0.26
UPF3A-212ENST00000619079 PTCH1Q13635 1447 aa13.4□□□□□ -0.26
UPF3A-212ENST00000619079 UTP14CQ5TAP6 766 aaKnown RBP13.4□□□□□ -0.26
UPF3A-212ENST00000619079 TNNQ9UQP3 1299 aa13.39□□□□□ -0.27
UPF3A-212ENST00000619079 TECPR2O15040 1411 aa13.39□□□□□ -0.27
UPF3A-212ENST00000619079 ZKSCAN5Q9Y2L8 839 aa13.39□□□□□ -0.27
UPF3A-212ENST00000619079 STRCP1A6NGW2 1772 aa13.38□□□□□ -0.27
UPF3A-212ENST00000619079 XRN1Q8IZH2 1706 aaKnown RBP13.38□□□□□ -0.27
UPF3A-212ENST00000619079 SASS6Q6UVJ0 657 aa13.38□□□□□ -0.27
UPF3A-212ENST00000619079 TCP11L2Q8N4U5 519 aa13.38□□□□□ -0.27
UPF3A-212ENST00000619079 BCL2L13Q9BXK5 485 aa13.38□□□□□ -0.27
UPF3A-212ENST00000619079 LRRC7Q96NW7 1537 aa13.38□□□□□ -0.27
UPF3A-212ENST00000619079 LTBP4Q8N2S1 1624 aa13.38□□□□□ -0.27
UPF3A-212ENST00000619079 NCLP19338 710 aaKnown RBP13.38□□□□□ -0.27
UPF3A-212ENST00000619079 MINK1Q8N4C8 1332 aaPredicted RBP13.37□□□□□ -0.27
UPF3A-212ENST00000619079 BAG4O95429 457 aaKnown RBP13.37□□□□□ -0.27
UPF3A-212ENST00000619079 BMP2KLQ5H9B9 411 aa13.37□□□□□ -0.27
UPF3A-212ENST00000619079 SHPRHQ149N8 1683 aa13.37□□□□□ -0.27
UPF3A-212ENST00000619079 FAM135BQ49AJ0 1406 aa13.36□□□□□ -0.27
UPF3A-212ENST00000619079 MSH6P52701 1360 aa13.36□□□□□ -0.27
UPF3A-212ENST00000619079 NUCB2P80303 420 aa13.36□□□□□ -0.27
UPF3A-212ENST00000619079 CERKQ8TCT0 537 aa13.36□□□□□ -0.27
UPF3A-212ENST00000619079 SIRT1Q96EB6 747 aa13.36□□□□□ -0.27
UPF3A-212ENST00000619079 CCDC39Q9UFE4 941 aa13.36□□□□□ -0.27
UPF3A-212ENST00000619079 SSFA2P28290 1259 aa13.35□□□□□ -0.27
UPF3A-212ENST00000619079 NUCB1Q02818 461 aa13.35□□□□□ -0.27
UPF3A-212ENST00000619079 NEUROD2Q15784 382 aa13.35□□□□□ -0.27
UPF3A-212ENST00000619079 CCDC94Q9BW85 323 aaPredicted RBP13.35□□□□□ -0.27
UPF3A-212ENST00000619079 DLC1Q96QB1 1528 aa13.35□□□□□ -0.27
UPF3A-212ENST00000619079 ATF3P18847 181 aa13.35□□□□□ -0.27
UPF3A-212ENST00000619079 ZSCAN23Q3MJ62 389 aa13.35□□□□□ -0.27
UPF3A-212ENST00000619079 C19orf44Q9H6X5 657 aa13.35□□□□□ -0.27
UPF3A-212ENST00000619079 KNDC1Q76NI1 1749 aa13.35□□□□□ -0.27
UPF3A-212ENST00000619079 TNNT2P45379 298 aaPredicted RBP13.34□□□□□ -0.27
UPF3A-212ENST00000619079 KIF2CQ99661 725 aa13.34□□□□□ -0.27
UPF3A-212ENST00000619079 PLEKHG5O94827 1062 aa13.34□□□□□ -0.27
UPF3A-212ENST00000619079 XPCQ01831 940 aaPredicted RBP13.34□□□□□ -0.27
UPF3A-212ENST00000619079 DMTNQ08495 405 aa13.33□□□□□ -0.27
UPF3A-212ENST00000619079 ITPRIPQ8IWB1 547 aa13.33□□□□□ -0.27
UPF3A-212ENST00000619079 CFAP44Q96MT7 982 aa13.33□□□□□ -0.27
UPF3A-212ENST00000619079 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.33□□□□□ -0.27
UPF3A-212ENST00000619079 RRP7AQ9Y3A4 280 aaKnown RBP13.33□□□□□ -0.27
UPF3A-212ENST00000619079 NUTM2FA1L443 756 aa13.33□□□□□ -0.28
UPF3A-212ENST00000619079 CFAP53Q96M91 514 aa13.33□□□□□ -0.28
UPF3A-212ENST00000619079 SMC4Q9NTJ3 1288 aa13.33□□□□□ -0.28
UPF3A-212ENST00000619079 ATF7IPQ6VMQ6 1270 aa13.32□□□□□ -0.28
UPF3A-212ENST00000619079 CARD14Q9BXL6 1004 aa13.32□□□□□ -0.28
UPF3A-212ENST00000619079 ADGRL3Q9HAR2 1447 aa13.32□□□□□ -0.28
UPF3A-212ENST00000619079 ARHGEF28Q8N1W1 1705 aaKnown RBP13.32□□□□□ -0.28
UPF3A-212ENST00000619079 TRIM27P14373 513 aa13.32□□□□□ -0.28
UPF3A-212ENST00000619079 CAVIN1Q6NZI2 390 aaKnown RBP13.32□□□□□ -0.28
UPF3A-212ENST00000619079 CADPS2Q86UW7 1296 aa13.32□□□□□ -0.28
UPF3A-212ENST00000619079 CHD1LQ86WJ1 897 aa13.32□□□□□ -0.28
UPF3A-212ENST00000619079 MORC1Q86VD1 984 aa13.31□□□□□ -0.28
UPF3A-212ENST00000619079 GAS2L2Q8NHY3 880 aa13.31□□□□□ -0.28
UPF3A-212ENST00000619079 RBSNQ9H1K0 784 aa13.31□□□□□ -0.28
UPF3A-212ENST00000619079 ZBTB40Q9NUA8 1239 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms