RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 NSD3Q9BZ95 1437 aa7.96□□□□□ -1.14
CPNE3-208ENST00000614678 SPATA31A1Q5TZJ5 1347 aa7.96□□□□□ -1.14
CPNE3-208ENST00000614678 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.95□□□□□ -1.14
CPNE3-208ENST00000614678 NWD2Q9ULI1 1742 aa7.95□□□□□ -1.14
CPNE3-208ENST00000614678 LTN1O94822 1766 aa7.95□□□□□ -1.14
CPNE3-208ENST00000614678 OVOS2A0A0J9YW53 1432 aa7.95□□□□□ -1.14
CPNE3-208ENST00000614678 OVOS2Q6IE36 1432 aa7.95□□□□□ -1.14
CPNE3-208ENST00000614678 USHBP1Q8N6Y0 703 aa7.95□□□□□ -1.14
CPNE3-208ENST00000614678 RGPD2P0DJD1 1756 aa7.95□□□□□ -1.14
CPNE3-208ENST00000614678 ANKRD36BQ8N2N9 1353 aa7.95□□□□□ -1.14
CPNE3-208ENST00000614678 EDC4Q6P2E9 1401 aaKnown RBP7.95□□□□□ -1.14
CPNE3-208ENST00000614678 TERF2IPQ9NYB0 399 aa7.95□□□□□ -1.14
CPNE3-208ENST00000614678 EMILIN1Q9Y6C2 1016 aa7.95□□□□□ -1.14
CPNE3-208ENST00000614678 MAP3K19Q56UN5 1328 aa7.95□□□□□ -1.14
CPNE3-208ENST00000614678 WASHC2AQ641Q2 1341 aa7.94□□□□□ -1.14
CPNE3-208ENST00000614678 CPDO75976 1380 aa7.94□□□□□ -1.14
CPNE3-208ENST00000614678 HSP90AB2PQ58FF8 381 aa7.94□□□□□ -1.14
CPNE3-208ENST00000614678 TOM1L2Q6ZVM7 507 aa7.94□□□□□ -1.14
CPNE3-208ENST00000614678 PPM1GO15355 546 aaPredicted RBP7.93□□□□□ -1.14
CPNE3-208ENST00000614678 TTC21AQ8NDW8 1320 aa7.93□□□□□ -1.14
CPNE3-208ENST00000614678 PEAK1Q9H792 1746 aa7.93□□□□□ -1.14
CPNE3-208ENST00000614678 ONECUT3O60422 494 aaPredicted RBP7.93□□□□□ -1.14
CPNE3-208ENST00000614678 USP31Q70CQ4 1352 aa7.92□□□□□ -1.14
CPNE3-208ENST00000614678 CSB-PGBD3P0DP91 1061 aa7.92□□□□□ -1.14
CPNE3-208ENST00000614678 AATKQ6ZMQ8 1374 aa7.92□□□□□ -1.14
CPNE3-208ENST00000614678 KRT27Q7Z3Y8 459 aa7.92□□□□□ -1.14
CPNE3-208ENST00000614678 COG3Q96JB2 828 aa7.92□□□□□ -1.14
CPNE3-208ENST00000614678 KAT6BQ8WYB5 2073 aa7.91□□□□□ -1.14
CPNE3-208ENST00000614678 ERBB3P21860 1342 aa7.91□□□□□ -1.14
CPNE3-208ENST00000614678 ANKRD24Q8TF21 1146 aa7.91□□□□□ -1.14
CPNE3-208ENST00000614678 NLRP2Q9NX02 1062 aa7.91□□□□□ -1.14
CPNE3-208ENST00000614678 TRIM37O94972 964 aa7.91□□□□□ -1.14
CPNE3-208ENST00000614678 HOXC9P31274 260 aa7.91□□□□□ -1.14
CPNE3-208ENST00000614678 CDK12Q9NYV4 1490 aaPredicted RBP7.91□□□□□ -1.14
CPNE3-208ENST00000614678 THSD7AQ9UPZ6 1657 aa7.91□□□□□ -1.14
CPNE3-208ENST00000614678 TCP11L2Q8N4U5 519 aa7.91□□□□□ -1.14
CPNE3-208ENST00000614678 WDR17Q8IZU2 1322 aa7.9□□□□□ -1.14
CPNE3-208ENST00000614678 NBPF6Q5VWK0 638 aa7.9□□□□□ -1.14
CPNE3-208ENST00000614678 NBPF4Q96M43 638 aa7.9□□□□□ -1.14
CPNE3-208ENST00000614678 CC2D1BQ5T0F9 858 aaKnown RBP7.9□□□□□ -1.14
CPNE3-208ENST00000614678 PUS7Q96PZ0 661 aaKnown RBP7.9□□□□□ -1.14
CPNE3-208ENST00000614678 CRB1P82279 1406 aa7.9□□□□□ -1.15
CPNE3-208ENST00000614678 KIF20BQ96Q89 1820 aa7.9□□□□□ -1.15
CPNE3-208ENST00000614678 KCNQ2O43526 872 aa7.9□□□□□ -1.15
CPNE3-208ENST00000614678 MARCH10Q8NA82 808 aaPredicted RBP7.9□□□□□ -1.15
CPNE3-208ENST00000614678 KCNH5Q8NCM2 988 aa7.9□□□□□ -1.15
CPNE3-208ENST00000614678 EN1Q05925 392 aaPredicted RBP7.89□□□□□ -1.15
CPNE3-208ENST00000614678 MAP2P11137 1827 aaKnown RBP7.89□□□□□ -1.15
CPNE3-208ENST00000614678 AMPHP49418 695 aa7.89□□□□□ -1.15
CPNE3-208ENST00000614678 PER1O15534 1290 aaPredicted RBP7.89□□□□□ -1.15
CPNE3-208ENST00000614678 ACSBG1Q96GR2 724 aa7.89□□□□□ -1.15
CPNE3-208ENST00000614678 POLKQ9UBT6 870 aa7.89□□□□□ -1.15
CPNE3-208ENST00000614678 USP54Q70EL1 1684 aa7.88□□□□□ -1.15
CPNE3-208ENST00000614678 LRRC37A3O60309 1634 aa7.88□□□□□ -1.15
CPNE3-208ENST00000614678 CCDC7Q96M83 1385 aa7.88□□□□□ -1.15
CPNE3-208ENST00000614678 KCNQ4P56696 695 aa7.88□□□□□ -1.15
CPNE3-208ENST00000614678 IP6K1Q92551 441 aa7.88□□□□□ -1.15
CPNE3-208ENST00000614678 BRD4O60885 1362 aaPredicted RBP7.87□□□□□ -1.15
CPNE3-208ENST00000614678 AMER1Q5JTC6 1135 aaPredicted RBP7.87□□□□□ -1.15
CPNE3-208ENST00000614678 NINLQ9Y2I6 1382 aa7.87□□□□□ -1.15
CPNE3-208ENST00000614678 EZH2Q15910 746 aaKnown RBP7.87□□□□□ -1.15
CPNE3-208ENST00000614678 BARGINQ6ZT62 677 aa7.87□□□□□ -1.15
CPNE3-208ENST00000614678 MEGF6O75095 1541 aa7.87□□□□□ -1.15
CPNE3-208ENST00000614678 PSDA5PKW4 1024 aaPredicted RBP7.86□□□□□ -1.15
CPNE3-208ENST00000614678 CDCA8Q53HL2 280 aa7.86□□□□□ -1.15
CPNE3-208ENST00000614678 DDX54Q8TDD1 881 aaKnown RBP7.86□□□□□ -1.15
CPNE3-208ENST00000614678 PDE3BQ13370 1112 aa7.86□□□□□ -1.15
CPNE3-208ENST00000614678 CARD10Q9BWT7 1032 aa7.86□□□□□ -1.15
CPNE3-208ENST00000614678 DISP2A7MBM2 1401 aa7.86□□□□□ -1.15
CPNE3-208ENST00000614678 DDB1Q16531 1140 aa7.86□□□□□ -1.15
CPNE3-208ENST00000614678 AEBP1Q8IUX7 1158 aa7.86□□□□□ -1.15
CPNE3-208ENST00000614678 PDGFDQ9GZP0 370 aaPredicted RBP7.86□□□□□ -1.15
CPNE3-208ENST00000614678 CGNL1Q0VF96 1302 aa7.85□□□□□ -1.15
CPNE3-208ENST00000614678 FAM208AQ9UK61 1670 aaKnown RBP7.85□□□□□ -1.15
CPNE3-208ENST00000614678 WNK3Q9BYP7 1800 aa7.85□□□□□ -1.15
CPNE3-208ENST00000614678 EYA1Q99502 592 aa7.84□□□□□ -1.15
CPNE3-208ENST00000614678 PARP4Q9UKK3 1724 aaKnown RBP7.84□□□□□ -1.15
CPNE3-208ENST00000614678 EIF4A2Q14240 407 aaKnown RBP7.84□□□□□ -1.15
CPNE3-208ENST00000614678 TNS1Q9HBL0 1735 aaKnown RBP7.84□□□□□ -1.15
CPNE3-208ENST00000614678 APBA3O96018 575 aa7.84□□□□□ -1.15
CPNE3-208ENST00000614678 PROM2Q8N271 834 aa7.84□□□□□ -1.15
CPNE3-208ENST00000614678 SBF2Q86WG5 1849 aa7.83□□□□□ -1.16
CPNE3-208ENST00000614678 MORC1Q86VD1 984 aa7.83□□□□□ -1.16
CPNE3-208ENST00000614678 KNSTRNQ9Y448 316 aa7.83□□□□□ -1.16
CPNE3-208ENST00000614678 SHANK3Q9BYB0 1731 aa7.83□□□□□ -1.16
CPNE3-208ENST00000614678 IL2RBP14784 551 aa7.83□□□□□ -1.16
CPNE3-208ENST00000614678 DDX10Q13206 875 aaKnown RBP7.83□□□□□ -1.16
CPNE3-208ENST00000614678 SMIM5Q71RC9 77 aa7.83□□□□□ -1.16
CPNE3-208ENST00000614678 BLMP54132 1417 aaPredicted RBP7.83□□□□□ -1.16
CPNE3-208ENST00000614678 EXOC5O00471 708 aa7.82□□□□□ -1.16
CPNE3-208ENST00000614678 MTHFSP49914 203 aa7.82□□□□□ -1.16
CPNE3-208ENST00000614678 THRAP3Q9Y2W1 955 aaKnown RBP7.82□□□□□ -1.16
CPNE3-208ENST00000614678 FLT4P35916 1363 aa7.82□□□□□ -1.16
CPNE3-208ENST00000614678 ANKRD26Q9UPS8 1709 aa7.81□□□□□ -1.16
CPNE3-208ENST00000614678 CYP27B1O15528 508 aa7.81□□□□□ -1.16
CPNE3-208ENST00000614678 SLC24A1O60721 1099 aa7.81□□□□□ -1.16
CPNE3-208ENST00000614678 SYTL4Q96C24 671 aaPredicted RBP7.81□□□□□ -1.16
CPNE3-208ENST00000614678 CAMKK2Q96RR4 588 aa7.81□□□□□ -1.16
CPNE3-208ENST00000614678 INSRP06213 1382 aa7.81□□□□□ -1.16
CPNE3-208ENST00000614678 SENP3-EIF4A1A0A087X0R7 540 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms