RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 XRN1Q8IZH2 1706 aaKnown RBP11.97□□□□□ -0.49
CCDC47-207ENST00000612558 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.97□□□□□ -0.49
CCDC47-207ENST00000612558 ATP7BP35670 1465 aa11.97□□□□□ -0.49
CCDC47-207ENST00000612558 KCNA6P17658 529 aa11.96□□□□□ -0.49
CCDC47-207ENST00000612558 PPIP5K1Q6PFW1 1433 aa11.95□□□□□ -0.5
CCDC47-207ENST00000612558 DPY19L2Q6NUT2 758 aa11.95□□□□□ -0.5
CCDC47-207ENST00000612558 CHD2O14647 1828 aaKnown RBP11.94□□□□□ -0.5
CCDC47-207ENST00000612558 INSRP06213 1382 aa11.94□□□□□ -0.5
CCDC47-207ENST00000612558 ZBED9Q6R2W3 1325 aa11.94□□□□□ -0.5
CCDC47-207ENST00000612558 NCKAP5LQ9HCH0 1330 aa11.94□□□□□ -0.5
CCDC47-207ENST00000612558 KDM4FA0A1W2PPD8 638 aa11.94□□□□□ -0.5
CCDC47-207ENST00000612558 CPSF1Q10570 1443 aaKnown RBP11.94□□□□□ -0.5
CCDC47-207ENST00000612558 FAM205CA6NFA0 338 aa11.93□□□□□ -0.5
CCDC47-207ENST00000612558 FYB1O15117 783 aa11.93□□□□□ -0.5
CCDC47-207ENST00000612558 PRR36Q9H6K5 1346 aa11.93□□□□□ -0.5
CCDC47-207ENST00000612558 PLEKHG3A1L390 1219 aa11.92□□□□□ -0.5
CCDC47-207ENST00000612558 ZNF710Q8N1W2 664 aa11.92□□□□□ -0.5
CCDC47-207ENST00000612558 HS3ST6Q96QI5 342 aa11.92□□□□□ -0.5
CCDC47-207ENST00000612558 POLR3AO14802 1390 aaPredicted RBP11.91□□□□□ -0.5
CCDC47-207ENST00000612558 WDR43Q15061 677 aaKnown RBP eCLIP11.91□□□□□ -0.5
CCDC47-207ENST00000612558 GGNBP2Q9H3C7 697 aa11.91□□□□□ -0.5
CCDC47-207ENST00000612558 CDC42BPGQ6DT37 1551 aa11.91□□□□□ -0.5
CCDC47-207ENST00000612558 EDC4Q6P2E9 1401 aaKnown RBP11.9□□□□□ -0.5
CCDC47-207ENST00000612558 TNNT2P45379 298 aaPredicted RBP11.9□□□□□ -0.5
CCDC47-207ENST00000612558 DOK7Q18PE1 504 aa11.89□□□□□ -0.51
CCDC47-207ENST00000612558 ADAMTS8Q9UP79 889 aa11.89□□□□□ -0.51
CCDC47-207ENST00000612558 GTF3C3Q9Y5Q9 886 aa11.89□□□□□ -0.51
CCDC47-207ENST00000612558 TOPAZ1Q8N9V7 1692 aa11.89□□□□□ -0.51
CCDC47-207ENST00000612558 NUTM2FA1L443 756 aa11.88□□□□□ -0.51
CCDC47-207ENST00000612558 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.88□□□□□ -0.51
CCDC47-207ENST00000612558 ANKRD26Q9UPS8 1709 aa11.88□□□□□ -0.51
CCDC47-207ENST00000612558 ANKARQ7Z5J8 1434 aa11.88□□□□□ -0.51
CCDC47-207ENST00000612558 KIF20BQ96Q89 1820 aa11.88□□□□□ -0.51
CCDC47-207ENST00000612558 RIMBP2O15034 1052 aa11.88□□□□□ -0.51
CCDC47-207ENST00000612558 MTHFSP49914 203 aa11.88□□□□□ -0.51
CCDC47-207ENST00000612558 CFAP53Q96M91 514 aa11.88□□□□□ -0.51
CCDC47-207ENST00000612558 AKAP12Q02952 1782 aa11.87□□□□□ -0.51
CCDC47-207ENST00000612558 ACEP12821 1306 aa11.87□□□□□ -0.51
CCDC47-207ENST00000612558 BLMP54132 1417 aaPredicted RBP11.87□□□□□ -0.51
CCDC47-207ENST00000612558 ITSN1Q15811 1721 aa11.87□□□□□ -0.51
CCDC47-207ENST00000612558 MON2Q7Z3U7 1717 aa11.87□□□□□ -0.51
CCDC47-207ENST00000612558 NWD1Q149M9 1564 aa11.85□□□□□ -0.51
CCDC47-207ENST00000612558 HSPA2P54652 639 aa11.85□□□□□ -0.51
CCDC47-207ENST00000612558 ADGRL3Q9HAR2 1447 aa11.85□□□□□ -0.51
CCDC47-207ENST00000612558 FMN2Q9NZ56 1722 aa11.85□□□□□ -0.51
CCDC47-207ENST00000612558 NME9Q86XW9 330 aa11.84□□□□□ -0.51
CCDC47-207ENST00000612558 USP6P35125 1406 aa11.84□□□□□ -0.51
CCDC47-207ENST00000612558 NKTRP30414 1462 aaKnown RBP11.84□□□□□ -0.51
CCDC47-207ENST00000612558 PROSER2Q86WR7 435 aaPredicted RBP11.84□□□□□ -0.51
CCDC47-207ENST00000612558 NALCNQ8IZF0 1738 aa11.84□□□□□ -0.51
CCDC47-207ENST00000612558 EFCAB3Q8N7B9 438 aa11.84□□□□□ -0.51
CCDC47-207ENST00000612558 NGDNQ8NEJ9 315 aaKnown RBP11.84□□□□□ -0.51
CCDC47-207ENST00000612558 PMFBP1Q8TBY8 1022 aa11.84□□□□□ -0.51
CCDC47-207ENST00000612558 COG3Q96JB2 828 aa11.84□□□□□ -0.51
CCDC47-207ENST00000612558 RGPD8O14715 1765 aaPredicted RBP11.83□□□□□ -0.52
CCDC47-207ENST00000612558 LMTK3Q96Q04 1460 aa11.83□□□□□ -0.52
CCDC47-207ENST00000612558 TTC21BQ7Z4L5 1316 aa11.83□□□□□ -0.52
CCDC47-207ENST00000612558 HOXB3P14651 431 aaPredicted RBP11.83□□□□□ -0.52
CCDC47-207ENST00000612558 HOXB1P14653 301 aaPredicted RBP11.83□□□□□ -0.52
CCDC47-207ENST00000612558 C14orf37Q86TY3 774 aa11.83□□□□□ -0.52
CCDC47-207ENST00000612558 RBM33Q96EV2 1170 aaKnown RBP11.83□□□□□ -0.52
CCDC47-207ENST00000612558 SSH2Q76I76 1423 aa11.82□□□□□ -0.52
CCDC47-207ENST00000612558 PDE3BQ13370 1112 aa11.82□□□□□ -0.52
CCDC47-207ENST00000612558 KRTAP3-3Q9BYR6 98 aa11.82□□□□□ -0.52
CCDC47-207ENST00000612558 KRTAP3-2Q9BYR7 98 aa11.82□□□□□ -0.52
CCDC47-207ENST00000612558 TTC21AQ8NDW8 1320 aa11.82□□□□□ -0.52
CCDC47-207ENST00000612558 SENP3-EIF4A1A0A087X0R7 540 aa11.81□□□□□ -0.52
CCDC47-207ENST00000612558 NRKQ7Z2Y5 1582 aa11.81□□□□□ -0.52
CCDC47-207ENST00000612558 AATKQ6ZMQ8 1374 aa11.81□□□□□ -0.52
CCDC47-207ENST00000612558 SMG6Q86US8 1419 aaKnown RBP11.81□□□□□ -0.52
CCDC47-207ENST00000612558 POTEB3A0JP26 581 aa11.8□□□□□ -0.52
CCDC47-207ENST00000612558 POTEBQ6S5H4 581 aa11.8□□□□□ -0.52
CCDC47-207ENST00000612558 NGEFQ8N5V2 710 aa11.8□□□□□ -0.52
CCDC47-207ENST00000612558 POLKQ9UBT6 870 aa11.8□□□□□ -0.52
CCDC47-207ENST00000612558 NUDCQ9Y266 331 aa11.8□□□□□ -0.52
CCDC47-207ENST00000612558 ERBB3P21860 1342 aa11.8□□□□□ -0.52
CCDC47-207ENST00000612558 PNPLA6Q8IY17 1366 aa11.8□□□□□ -0.52
CCDC47-207ENST00000612558 SOX12O15370 315 aa11.79□□□□□ -0.52
CCDC47-207ENST00000612558 C19orf44Q9H6X5 657 aa11.79□□□□□ -0.52
CCDC47-207ENST00000612558 PHF8Q9UPP1 1060 aa11.79□□□□□ -0.52
CCDC47-207ENST00000612558 SALL2Q9Y467 1007 aaPredicted RBP11.79□□□□□ -0.52
CCDC47-207ENST00000612558 SHPRHQ149N8 1683 aa11.79□□□□□ -0.52
CCDC47-207ENST00000612558 MAP2P11137 1827 aaKnown RBP11.79□□□□□ -0.52
CCDC47-207ENST00000612558 NCOA3Q9Y6Q9 1424 aa11.79□□□□□ -0.52
CCDC47-207ENST00000612558 DIAPH1O60610 1272 aaKnown RBP11.78□□□□□ -0.52
CCDC47-207ENST00000612558 CCDC146Q8IYE0 955 aa11.78□□□□□ -0.52
CCDC47-207ENST00000612558 COL3A1P02461 1466 aaPredicted RBP11.78□□□□□ -0.52
CCDC47-207ENST00000612558 STRCQ7RTU9 1775 aa11.78□□□□□ -0.52
CCDC47-207ENST00000612558 U2AF1L5P0DN76 240 aaPredicted RBP11.77□□□□□ -0.53
CCDC47-207ENST00000612558 FBLN1P23142 703 aa11.77□□□□□ -0.53
CCDC47-207ENST00000612558 U2AF1Q01081 240 aaKnown RBP eCLIP11.77□□□□□ -0.53
CCDC47-207ENST00000612558 ESCO1Q5FWF5 840 aa11.77□□□□□ -0.53
CCDC47-207ENST00000612558 RUNDC1Q96C34 613 aa11.77□□□□□ -0.53
CCDC47-207ENST00000612558 USP31Q70CQ4 1352 aa11.77□□□□□ -0.53
CCDC47-207ENST00000612558 OVOS2A0A0J9YW53 1432 aa11.77□□□□□ -0.53
CCDC47-207ENST00000612558 OVOS2Q6IE36 1432 aa11.77□□□□□ -0.53
CCDC47-207ENST00000612558 TMEM94Q12767 1356 aa11.76□□□□□ -0.53
CCDC47-207ENST00000612558 APAF1O14727 1248 aa11.76□□□□□ -0.53
CCDC47-207ENST00000612558 RIOK3O14730 519 aaKnown RBP11.76□□□□□ -0.53
CCDC47-207ENST00000612558 PPM1GO15355 546 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms