RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ABCC6O95255 1503 aa22.68■■□□□ 1.22
CCDC28A-202ENST00000611852 AMER1Q5JTC6 1135 aaPredicted RBP22.68■■□□□ 1.22
CCDC28A-202ENST00000611852 GJD4Q96KN9 370 aaPredicted RBP22.68■■□□□ 1.22
CCDC28A-202ENST00000611852 STRN4Q9NRL3 753 aa22.67■■□□□ 1.22
CCDC28A-202ENST00000611852 COL5A2P05997 1499 aaPredicted RBP22.67■■□□□ 1.22
CCDC28A-202ENST00000611852 MAP3K19Q56UN5 1328 aa22.66■■□□□ 1.22
CCDC28A-202ENST00000611852 EVA1CP58658 441 aa22.66■■□□□ 1.22
CCDC28A-202ENST00000611852 GLI3P10071 1580 aa22.65■■□□□ 1.22
CCDC28A-202ENST00000611852 RGPD5Q99666 1765 aa22.65■■□□□ 1.22
CCDC28A-202ENST00000611852 RRS1Q15050 365 aaKnown RBP22.65■■□□□ 1.22
CCDC28A-202ENST00000611852 CCDC9Q9Y3X0 531 aaKnown RBP22.65■■□□□ 1.22
CCDC28A-202ENST00000611852 LARP1Q6PKG0 1096 aaKnown RBP22.63■■□□□ 1.21
CCDC28A-202ENST00000611852 SPATA31A5Q5VU36 1347 aa22.63■■□□□ 1.21
CCDC28A-202ENST00000611852 SPATA31A7Q8IWB4 1347 aa22.63■■□□□ 1.21
CCDC28A-202ENST00000611852 IP6K1Q92551 441 aa22.62■■□□□ 1.21
CCDC28A-202ENST00000611852 CDK12Q9NYV4 1490 aaPredicted RBP22.62■■□□□ 1.21
CCDC28A-202ENST00000611852 HOXC9P31274 260 aa22.61■■□□□ 1.21
CCDC28A-202ENST00000611852 AMPHP49418 695 aa22.61■■□□□ 1.21
CCDC28A-202ENST00000611852 MORC1Q86VD1 984 aa22.61■■□□□ 1.21
CCDC28A-202ENST00000611852 NPC1L1Q9UHC9 1359 aa22.61■■□□□ 1.21
CCDC28A-202ENST00000611852 BLMP54132 1417 aaPredicted RBP22.61■■□□□ 1.21
CCDC28A-202ENST00000611852 RTL1A6NKG5 1358 aa22.6■■□□□ 1.21
CCDC28A-202ENST00000611852 TNNT2P45379 298 aaPredicted RBP22.6■■□□□ 1.21
CCDC28A-202ENST00000611852 SPATA31A1Q5TZJ5 1347 aa22.6■■□□□ 1.21
CCDC28A-202ENST00000611852 WDR17Q8IZU2 1322 aa22.59■■□□□ 1.21
CCDC28A-202ENST00000611852 CC2D1BQ5T0F9 858 aaKnown RBP22.59■■□□□ 1.21
CCDC28A-202ENST00000611852 RGS12O14924 1447 aa22.58■■□□□ 1.21
CCDC28A-202ENST00000611852 CRB1P82279 1406 aa22.58■■□□□ 1.21
CCDC28A-202ENST00000611852 KIF24Q5T7B8 1368 aa22.58■■□□□ 1.21
CCDC28A-202ENST00000611852 ERBB3P21860 1342 aa22.58■■□□□ 1.21
CCDC28A-202ENST00000611852 EMILIN1Q9Y6C2 1016 aa22.58■■□□□ 1.21
CCDC28A-202ENST00000611852 MAP2P11137 1827 aaKnown RBP22.58■■□□□ 1.21
CCDC28A-202ENST00000611852 PEAK1Q9H792 1746 aa22.58■■□□□ 1.21
CCDC28A-202ENST00000611852 ONECUT3O60422 494 aaPredicted RBP22.57■■□□□ 1.2
CCDC28A-202ENST00000611852 CSB-PGBD3P0DP91 1061 aa22.57■■□□□ 1.2
CCDC28A-202ENST00000611852 TOM1L2Q6ZVM7 507 aa22.57■■□□□ 1.2
CCDC28A-202ENST00000611852 ANKRD24Q8TF21 1146 aa22.57■■□□□ 1.2
CCDC28A-202ENST00000611852 USP35Q9P2H5 1018 aa22.57■■□□□ 1.2
CCDC28A-202ENST00000611852 POLKQ9UBT6 870 aa22.57■■□□□ 1.2
CCDC28A-202ENST00000611852 FLT4P35916 1363 aa22.56■■□□□ 1.2
CCDC28A-202ENST00000611852 DDX10Q13206 875 aaKnown RBP22.56■■□□□ 1.2
CCDC28A-202ENST00000611852 FAM98CQ17RN3 349 aaKnown RBP22.55■■□□□ 1.2
CCDC28A-202ENST00000611852 HSP90AB2PQ58FF8 381 aa22.54■■□□□ 1.2
CCDC28A-202ENST00000611852 TCP11L2Q8N4U5 519 aa22.54■■□□□ 1.2
CCDC28A-202ENST00000611852 PPM1GO15355 546 aaPredicted RBP22.53■■□□□ 1.2
CCDC28A-202ENST00000611852 CNGB1Q14028 1251 aaPredicted RBP22.53■■□□□ 1.2
CCDC28A-202ENST00000611852 INSRP06213 1382 aa22.53■■□□□ 1.2
CCDC28A-202ENST00000611852 ZNF316A6NFI3 1004 aaPredicted RBP22.52■■□□□ 1.2
CCDC28A-202ENST00000611852 BARGINQ6ZT62 677 aa22.52■■□□□ 1.2
CCDC28A-202ENST00000611852 LTV1Q96GA3 475 aaPredicted RBP22.52■■□□□ 1.2
CCDC28A-202ENST00000611852 CARD10Q9BWT7 1032 aa22.52■■□□□ 1.2
CCDC28A-202ENST00000611852 THRAP3Q9Y2W1 955 aaKnown RBP22.52■■□□□ 1.2
CCDC28A-202ENST00000611852 SMG6Q86US8 1419 aaKnown RBP22.52■■□□□ 1.2
CCDC28A-202ENST00000611852 SEPT12Q8IYM1 358 aa22.52■■□□□ 1.19
CCDC28A-202ENST00000611852 NLRP2Q9NX02 1062 aa22.51■■□□□ 1.19
CCDC28A-202ENST00000611852 THSD7AQ9UPZ6 1657 aa22.5■■□□□ 1.19
CCDC28A-202ENST00000611852 FAM208AQ9UK61 1670 aaKnown RBP22.49■■□□□ 1.19
CCDC28A-202ENST00000611852 A0A0G2JS52 829 aa22.48■■□□□ 1.19
CCDC28A-202ENST00000611852 MYT1Q01538 1121 aa22.48■■□□□ 1.19
CCDC28A-202ENST00000611852 BRWD3Q6RI45 1802 aa22.46■■□□□ 1.19
CCDC28A-202ENST00000611852 RGPD2P0DJD1 1756 aa22.45■■□□□ 1.18
CCDC28A-202ENST00000611852 WNK3Q9BYP7 1800 aa22.44■■□□□ 1.18
CCDC28A-202ENST00000611852 NBPF6Q5VWK0 638 aa22.44■■□□□ 1.18
CCDC28A-202ENST00000611852 NBPF4Q96M43 638 aa22.44■■□□□ 1.18
CCDC28A-202ENST00000611852 MTHFSP49914 203 aa22.43■■□□□ 1.18
CCDC28A-202ENST00000611852 DISP2A7MBM2 1401 aa22.43■■□□□ 1.18
CCDC28A-202ENST00000611852 CDCA7Q9BWT1 371 aaPredicted RBP22.42■■□□□ 1.18
CCDC28A-202ENST00000611852 PARP4Q9UKK3 1724 aaKnown RBP22.42■■□□□ 1.18
CCDC28A-202ENST00000611852 EIF4A2Q14240 407 aaKnown RBP22.41■■□□□ 1.18
CCDC28A-202ENST00000611852 KRT27Q7Z3Y8 459 aa22.41■■□□□ 1.18
CCDC28A-202ENST00000611852 PARD3Q8TEW0 1356 aa22.4■■□□□ 1.18
CCDC28A-202ENST00000611852 IL2RBP14784 551 aa22.39■■□□□ 1.17
CCDC28A-202ENST00000611852 USHBP1Q8N6Y0 703 aa22.39■■□□□ 1.17
CCDC28A-202ENST00000611852 LRRC37A3O60309 1634 aa22.39■■□□□ 1.17
CCDC28A-202ENST00000611852 PPP2R1AP30153 589 aa22.38■■□□□ 1.17
CCDC28A-202ENST00000611852 SOCS7O14512 581 aa22.37■■□□□ 1.17
CCDC28A-202ENST00000611852 EYA1Q99502 592 aa22.37■■□□□ 1.17
CCDC28A-202ENST00000611852 DDB1Q16531 1140 aa22.36■■□□□ 1.17
CCDC28A-202ENST00000611852 NCAPD2Q15021 1401 aa22.36■■□□□ 1.17
CCDC28A-202ENST00000611852 PDE3BQ13370 1112 aa22.36■■□□□ 1.17
CCDC28A-202ENST00000611852 IL13P35225 146 aa22.34■■□□□ 1.17
CCDC28A-202ENST00000611852 FAM182BQ5T319 152 aa22.34■■□□□ 1.17
CCDC28A-202ENST00000611852 IGSF1Q8N6C5 1336 aa22.33■■□□□ 1.17
CCDC28A-202ENST00000611852 MEGF6O75095 1541 aa22.33■■□□□ 1.17
CCDC28A-202ENST00000611852 EXOC5O00471 708 aa22.33■■□□□ 1.17
CCDC28A-202ENST00000611852 RALBP1Q15311 655 aa22.33■■□□□ 1.17
CCDC28A-202ENST00000611852 EP400Q96L91 3159 aa22.33■■□□□ 1.17
CCDC28A-202ENST00000611852 TNS2Q63HR2 1409 aa22.33■■□□□ 1.17
CCDC28A-202ENST00000611852 COL3A1P02461 1466 aaPredicted RBP22.32■■□□□ 1.16
CCDC28A-202ENST00000611852 RAPGEF4Q8WZA2 1011 aa22.31■■□□□ 1.16
CCDC28A-202ENST00000611852 OVOS2A0A0G2JMS6 1433 aa22.31■■□□□ 1.16
CCDC28A-202ENST00000611852 DIAPH1O60610 1272 aaKnown RBP22.31■■□□□ 1.16
CCDC28A-202ENST00000611852 RGPD1P0DJD0 1748 aa22.3■■□□□ 1.16
CCDC28A-202ENST00000611852 MARCH10Q8NA82 808 aaPredicted RBP22.29■■□□□ 1.16
CCDC28A-202ENST00000611852 UPF1Q92900 1129 aaKnown RBP eCLIP22.29■■□□□ 1.16
CCDC28A-202ENST00000611852 CFAP53Q96M91 514 aa22.29■■□□□ 1.16
CCDC28A-202ENST00000611852 TATP17735 454 aaPredicted RBP22.28■■□□□ 1.16
CCDC28A-202ENST00000611852 FAM196AQ6ZSG2 479 aa22.27■■□□□ 1.16
CCDC28A-202ENST00000611852 PRKRIP1Q9H875 184 aaPredicted RBP22.27■■□□□ 1.16
CCDC28A-202ENST00000611852 ZCRB1Q8TBF4 217 aaKnown RBP22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms