RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 SH3RF1Q7Z6J0 888 aa9.14□□□□□ -0.95
LINC00540-201ENST00000611481 FSHRP23945 695 aa9.13□□□□□ -0.95
LINC00540-201ENST00000611481 VASH1Q7L8A9 365 aaPredicted RBP9.13□□□□□ -0.95
LINC00540-201ENST00000611481 TRMT44Q8IYL2 757 aaKnown RBP9.13□□□□□ -0.95
LINC00540-201ENST00000611481 ARHGEF11O15085 1522 aa9.13□□□□□ -0.95
LINC00540-201ENST00000611481 SOS2Q07890 1332 aaPredicted RBP9.12□□□□□ -0.95
LINC00540-201ENST00000611481 PDE4DQ08499 809 aa9.12□□□□□ -0.95
LINC00540-201ENST00000611481 SH3BP5LQ7L8J4 393 aa9.12□□□□□ -0.95
LINC00540-201ENST00000611481 TSEN34Q9BSV6 310 aaKnown RBP9.12□□□□□ -0.95
LINC00540-201ENST00000611481 EMILIN1Q9Y6C2 1016 aa9.12□□□□□ -0.95
LINC00540-201ENST00000611481 MAGEB6P1A0A0J9YX57 407 aa9.11□□□□□ -0.95
LINC00540-201ENST00000611481 CCDC116Q8IYX3 515 aa9.1□□□□□ -0.95
LINC00540-201ENST00000611481 GPKOWQ92917 476 aaPredicted RBP eCLIP9.1□□□□□ -0.95
LINC00540-201ENST00000611481 DNMT3LQ9UJW3 386 aa9.1□□□□□ -0.95
LINC00540-201ENST00000611481 DCAF1Q9Y4B6 1507 aa9.1□□□□□ -0.95
LINC00540-201ENST00000611481 RTL5Q5HYW3 569 aaPredicted RBP9.09□□□□□ -0.95
LINC00540-201ENST00000611481 CLK2P49760 499 aaKnown RBP9.08□□□□□ -0.96
LINC00540-201ENST00000611481 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.08□□□□□ -0.96
LINC00540-201ENST00000611481 LAMC3Q9Y6N6 1575 aa9.07□□□□□ -0.96
LINC00540-201ENST00000611481 PDS5BQ9NTI5 1447 aa9.07□□□□□ -0.96
LINC00540-201ENST00000611481 CARD14Q9BXL6 1004 aa9.07□□□□□ -0.96
LINC00540-201ENST00000611481 RSPH6AQ9H0K4 717 aa9.07□□□□□ -0.96
LINC00540-201ENST00000611481 TTLL8A6PVC2 850 aa9.06□□□□□ -0.96
LINC00540-201ENST00000611481 ERFEQ4G0M1 354 aa9.06□□□□□ -0.96
LINC00540-201ENST00000611481 PGPEP1Q9NXJ5 209 aa9.06□□□□□ -0.96
LINC00540-201ENST00000611481 ZCCHC6Q5VYS8 1495 aaKnown RBP9.06□□□□□ -0.96
LINC00540-201ENST00000611481 ATAD2BQ9ULI0 1458 aa9.05□□□□□ -0.96
LINC00540-201ENST00000611481 MRC2Q9UBG0 1479 aa9.04□□□□□ -0.96
LINC00540-201ENST00000611481 PPP1R26Q5T8A7 1209 aaPredicted RBP9.04□□□□□ -0.96
LINC00540-201ENST00000611481 POLR3EQ9NVU0 708 aa9.04□□□□□ -0.96
LINC00540-201ENST00000611481 PTSQ03393 145 aa9.03□□□□□ -0.96
LINC00540-201ENST00000611481 PDXDC2PQ6P474 469 aa9.03□□□□□ -0.96
LINC00540-201ENST00000611481 CDV3Q9UKY7 258 aaKnown RBP9.03□□□□□ -0.96
LINC00540-201ENST00000611481 WDR62O43379 1518 aa9.03□□□□□ -0.96
LINC00540-201ENST00000611481 CTDSPL2Q05D32 466 aa9.02□□□□□ -0.97
LINC00540-201ENST00000611481 KCNMA1Q12791 1236 aa9.02□□□□□ -0.97
LINC00540-201ENST00000611481 Q6ZVU0 165 aa9.02□□□□□ -0.97
LINC00540-201ENST00000611481 ARHGAP9Q9BRR9 750 aa9.02□□□□□ -0.97
LINC00540-201ENST00000611481 HMGXB3Q12766 1538 aa9.01□□□□□ -0.97
LINC00540-201ENST00000611481 FIGNL2A6NMB9 653 aa9.01□□□□□ -0.97
LINC00540-201ENST00000611481 SPINT1O43278 529 aa9.01□□□□□ -0.97
LINC00540-201ENST00000611481 DHX9Q08211 1270 aaKnown RBP9.01□□□□□ -0.97
LINC00540-201ENST00000611481 CBLBQ13191 982 aa9.01□□□□□ -0.97
LINC00540-201ENST00000611481 SLC10A4Q96EP9 437 aa9.01□□□□□ -0.97
LINC00540-201ENST00000611481 SLC24A3Q9HC58 644 aa9.01□□□□□ -0.97
LINC00540-201ENST00000611481 FKBPLQ9UIM3 349 aa9.01□□□□□ -0.97
LINC00540-201ENST00000611481 KRT76Q01546 638 aa9□□□□□ -0.97
LINC00540-201ENST00000611481 GPR161Q8N6U8 529 aaKnown RBP9□□□□□ -0.97
LINC00540-201ENST00000611481 NANOS1Q8WY41 292 aaKnown RBP9□□□□□ -0.97
LINC00540-201ENST00000611481 CNTNAP3BQ96NU0 1288 aa9□□□□□ -0.97
LINC00540-201ENST00000611481 KCTD15Q96SI1 283 aaPredicted RBP9□□□□□ -0.97
LINC00540-201ENST00000611481 CNTNAP3Q9BZ76 1288 aa9□□□□□ -0.97
LINC00540-201ENST00000611481 ARAP1Q96P48 1450 aa9□□□□□ -0.97
LINC00540-201ENST00000611481 ZBTB33Q86T24 672 aa8.99□□□□□ -0.97
LINC00540-201ENST00000611481 ZC3H4Q9UPT8 1303 aaKnown RBP8.99□□□□□ -0.97
LINC00540-201ENST00000611481 CCDC155Q8N6L0 562 aa8.98□□□□□ -0.97
LINC00540-201ENST00000611481 LRRN4Q8WUT4 740 aa8.97□□□□□ -0.97
LINC00540-201ENST00000611481 COL25A1Q9BXS0 654 aaPredicted RBP8.97□□□□□ -0.97
LINC00540-201ENST00000611481 GSK3AP49840 483 aa8.96□□□□□ -0.98
LINC00540-201ENST00000611481 PTK2Q05397 1052 aa8.96□□□□□ -0.98
LINC00540-201ENST00000611481 SLC35F4A4IF30 521 aa8.95□□□□□ -0.98
LINC00540-201ENST00000611481 RNF225M0QZC1 329 aaPredicted RBP8.95□□□□□ -0.98
LINC00540-201ENST00000611481 INTS6LQ5JSJ4 861 aaKnown RBP8.95□□□□□ -0.98
LINC00540-201ENST00000611481 TMEM151AQ8N4L1 468 aa8.95□□□□□ -0.98
LINC00540-201ENST00000611481 KCTD17Q8N5Z5 321 aa8.95□□□□□ -0.98
LINC00540-201ENST00000611481 ADAMTS8Q9UP79 889 aa8.95□□□□□ -0.98
LINC00540-201ENST00000611481 GPSM3Q9Y4H4 160 aa8.95□□□□□ -0.98
LINC00540-201ENST00000611481 NR6A1Q15406 480 aa8.94□□□□□ -0.98
LINC00540-201ENST00000611481 SKIV2LQ15477 1246 aaKnown RBP8.94□□□□□ -0.98
LINC00540-201ENST00000611481 AGBL1Q96MI9 1066 aa8.94□□□□□ -0.98
LINC00540-201ENST00000611481 LOC100996750A0A140TA64 210 aa8.93□□□□□ -0.98
LINC00540-201ENST00000611481 ITGA6P23229 1130 aa8.93□□□□□ -0.98
LINC00540-201ENST00000611481 CTSOP43234 321 aaPredicted RBP8.93□□□□□ -0.98
LINC00540-201ENST00000611481 RELBQ01201 579 aa8.93□□□□□ -0.98
LINC00540-201ENST00000611481 RASSF7Q02833 373 aa8.93□□□□□ -0.98
LINC00540-201ENST00000611481 KRTAP4-6Q9BYQ5 205 aa8.93□□□□□ -0.98
LINC00540-201ENST00000611481 BAZ1BQ9UIG0 1483 aaKnown RBP8.93□□□□□ -0.98
LINC00540-201ENST00000611481 GDF11O95390 407 aa8.92□□□□□ -0.98
LINC00540-201ENST00000611481 NBPF20Q3BBV1 942 aa8.92□□□□□ -0.98
LINC00540-201ENST00000611481 RNFT1Q5M7Z0 435 aa8.92□□□□□ -0.98
LINC00540-201ENST00000611481 SV2AQ7L0J3 742 aa8.92□□□□□ -0.98
LINC00540-201ENST00000611481 VWA5B2Q8N398 1253 aa8.92□□□□□ -0.98
LINC00540-201ENST00000611481 INSM2Q96T92 566 aaPredicted RBP8.92□□□□□ -0.98
LINC00540-201ENST00000611481 SH3D19Q5HYK7 790 aa8.91□□□□□ -0.98
LINC00540-201ENST00000611481 ZNF385CQ66K41 422 aaPredicted RBP8.91□□□□□ -0.98
LINC00540-201ENST00000611481 PPP2R2DQ66LE6 453 aa8.91□□□□□ -0.98
LINC00540-201ENST00000611481 SVOPQ8N4V2 548 aa8.91□□□□□ -0.98
LINC00540-201ENST00000611481 PNMA1Q8ND90 353 aa8.91□□□□□ -0.98
LINC00540-201ENST00000611481 ADAM32Q8TC27 787 aa8.91□□□□□ -0.98
LINC00540-201ENST00000611481 OCSTAMPQ9BR26 566 aa8.91□□□□□ -0.98
LINC00540-201ENST00000611481 POLMQ9NP87 494 aaPredicted RBP8.91□□□□□ -0.98
LINC00540-201ENST00000611481 CDC14CA4D256 554 aa8.9□□□□□ -0.98
LINC00540-201ENST00000611481 SLC24A1O60721 1099 aa8.9□□□□□ -0.98
LINC00540-201ENST00000611481 SUZ12Q15022 739 aaKnown RBP8.9□□□□□ -0.98
LINC00540-201ENST00000611481 ATP1B4Q9UN42 357 aaPredicted RBP8.9□□□□□ -0.98
LINC00540-201ENST00000611481 AP1G2O75843 785 aa8.89□□□□□ -0.99
LINC00540-201ENST00000611481 SLURP2P0DP57 97 aa8.89□□□□□ -0.99
LINC00540-201ENST00000611481 PROCA1Q8NCQ7 364 aaPredicted RBP8.89□□□□□ -0.99
LINC00540-201ENST00000611481 RNF217Q8TC41 542 aa8.89□□□□□ -0.99
LINC00540-201ENST00000611481 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms