RNA–Protein interactions for RNA: ENST00000600343.5

NFKB1-212, Transcript of nuclear factor kappa B subunit 1, humanhuman

TSL 2 BASIC

Gene NFKB1, Length 4,010 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-212ENST00000600343 CHAMP1Q96JM3 812 aa11.84□□□□□ -0.51
NFKB1-212ENST00000600343 ATP2B1P20020 1258 aa11.84□□□□□ -0.51
NFKB1-212ENST00000600343 NOM1Q5C9Z4 860 aaKnown RBP11.84□□□□□ -0.51
NFKB1-212ENST00000600343 CCDC9Q9Y3X0 531 aaKnown RBP11.84□□□□□ -0.51
NFKB1-212ENST00000600343 LRRFIP2Q9Y608 721 aaKnown RBP11.84□□□□□ -0.51
NFKB1-212ENST00000600343 FHOD3Q2V2M9 1422 aa11.84□□□□□ -0.51
NFKB1-212ENST00000600343 RAD50Q92878 1312 aa11.84□□□□□ -0.51
NFKB1-212ENST00000600343 MAP2K1Q02750 393 aaPredicted RBP11.83□□□□□ -0.51
NFKB1-212ENST00000600343 RALGAPBQ86X10 1494 aa11.83□□□□□ -0.51
NFKB1-212ENST00000600343 ANKRD36BQ8N2N9 1353 aa11.83□□□□□ -0.52
NFKB1-212ENST00000600343 ZSCAN26Q16670 478 aa11.83□□□□□ -0.52
NFKB1-212ENST00000600343 CWC22Q9HCG8 908 aaKnown RBP11.83□□□□□ -0.52
NFKB1-212ENST00000600343 TNNQ9UQP3 1299 aa11.83□□□□□ -0.52
NFKB1-212ENST00000600343 CLASP1Q7Z460 1538 aa11.83□□□□□ -0.52
NFKB1-212ENST00000600343 SPC24Q8NBT2 197 aa11.83□□□□□ -0.52
NFKB1-212ENST00000600343 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.83□□□□□ -0.52
NFKB1-212ENST00000600343 V9GYY5 206 aaPredicted RBP11.83□□□□□ -0.52
NFKB1-212ENST00000600343 SRLQ86TD4 932 aa11.83□□□□□ -0.52
NFKB1-212ENST00000600343 APAF1O14727 1248 aa11.82□□□□□ -0.52
NFKB1-212ENST00000600343 FOXD4L5Q5VV16 416 aaPredicted RBP11.82□□□□□ -0.52
NFKB1-212ENST00000600343 FOXD4L4Q8WXT5 416 aaPredicted RBP11.82□□□□□ -0.52
NFKB1-212ENST00000600343 IFT57Q9NWB7 429 aa11.82□□□□□ -0.52
NFKB1-212ENST00000600343 KDM4AO75164 1064 aa11.82□□□□□ -0.52
NFKB1-212ENST00000600343 ATG3Q9NT62 314 aa11.82□□□□□ -0.52
NFKB1-212ENST00000600343 RRP15Q9Y3B9 282 aaKnown RBP11.82□□□□□ -0.52
NFKB1-212ENST00000600343 GPS2Q13227 327 aa11.82□□□□□ -0.52
NFKB1-212ENST00000600343 SEMA3FQ13275 785 aa11.82□□□□□ -0.52
NFKB1-212ENST00000600343 E2F4Q16254 413 aa11.82□□□□□ -0.52
NFKB1-212ENST00000600343 MED4Q9NPJ6 270 aa11.82□□□□□ -0.52
NFKB1-212ENST00000600343 RAI14Q9P0K7 980 aa11.82□□□□□ -0.52
NFKB1-212ENST00000600343 FAM135AQ9P2D6 1515 aa11.81□□□□□ -0.52
NFKB1-212ENST00000600343 ZNF853P0CG23 659 aa11.81□□□□□ -0.52
NFKB1-212ENST00000600343 ZNF592Q92610 1267 aa11.81□□□□□ -0.52
NFKB1-212ENST00000600343 HTATSF1O43719 755 aaKnown RBP11.81□□□□□ -0.52
NFKB1-212ENST00000600343 FAM212AQ96EL1 285 aa11.81□□□□□ -0.52
NFKB1-212ENST00000600343 POLR3GO15318 223 aaPredicted RBP11.81□□□□□ -0.52
NFKB1-212ENST00000600343 TPM4P67936 248 aa11.81□□□□□ -0.52
NFKB1-212ENST00000600343 ELF2Q15723 593 aa11.81□□□□□ -0.52
NFKB1-212ENST00000600343 TSGA10IPQ3SY00 556 aa11.81□□□□□ -0.52
NFKB1-212ENST00000600343 SGSM3Q96HU1 749 aa11.81□□□□□ -0.52
NFKB1-212ENST00000600343 HCLS1P14317 486 aaPredicted RBP11.8□□□□□ -0.52
NFKB1-212ENST00000600343 SLFNL1Q499Z3 407 aa11.8□□□□□ -0.52
NFKB1-212ENST00000600343 ZNF215Q9UL58 517 aaPredicted RBP11.8□□□□□ -0.52
NFKB1-212ENST00000600343 SH3BP1Q9Y3L3 701 aa11.8□□□□□ -0.52
NFKB1-212ENST00000600343 PACS2Q86VP3 889 aa11.8□□□□□ -0.52
NFKB1-212ENST00000600343 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.8□□□□□ -0.52
NFKB1-212ENST00000600343 ZDHHC9Q9Y397 364 aa11.8□□□□□ -0.52
NFKB1-212ENST00000600343 U2SURPO15042 1029 aaKnown RBP11.79□□□□□ -0.52
NFKB1-212ENST00000600343 RABEP1Q15276 862 aa11.79□□□□□ -0.52
NFKB1-212ENST00000600343 DMRT2Q9Y5R5 561 aa11.79□□□□□ -0.52
NFKB1-212ENST00000600343 ZGPATQ8N5A5 531 aaKnown RBP11.79□□□□□ -0.52
NFKB1-212ENST00000600343 ATP6V1AP38606 617 aa11.78□□□□□ -0.52
NFKB1-212ENST00000600343 LRCH2Q5VUJ6 765 aa11.78□□□□□ -0.52
NFKB1-212ENST00000600343 BCL2L13Q9BXK5 485 aa11.78□□□□□ -0.52
NFKB1-212ENST00000600343 CFTRP13569 1480 aa11.78□□□□□ -0.52
NFKB1-212ENST00000600343 RARSP54136 660 aaKnown RBP11.78□□□□□ -0.52
NFKB1-212ENST00000600343 GSCP56915 257 aaPredicted RBP11.78□□□□□ -0.52
NFKB1-212ENST00000600343 TPD52L1Q16890 204 aaPredicted RBP11.78□□□□□ -0.52
NFKB1-212ENST00000600343 PTGS1P23219 599 aa11.77□□□□□ -0.52
NFKB1-212ENST00000600343 PPP2R1AP30153 589 aa11.77□□□□□ -0.52
NFKB1-212ENST00000600343 MVPQ14764 893 aaKnown RBP11.77□□□□□ -0.52
NFKB1-212ENST00000600343 SMARCE1Q969G3 411 aa11.77□□□□□ -0.52
NFKB1-212ENST00000600343 ERO1AQ96HE7 468 aa11.77□□□□□ -0.52
NFKB1-212ENST00000600343 SHROOM2Q13796 1616 aa11.77□□□□□ -0.52
NFKB1-212ENST00000600343 CFAP65Q6ZU64 1925 aaKnown RBP11.77□□□□□ -0.52
NFKB1-212ENST00000600343 CAMSAP2Q08AD1 1489 aa11.77□□□□□ -0.53
NFKB1-212ENST00000600343 MAP2K2P36507 400 aa11.77□□□□□ -0.53
NFKB1-212ENST00000600343 CEP135Q66GS9 1140 aa11.77□□□□□ -0.53
NFKB1-212ENST00000600343 ANKRD20A12PQ8NF67 263 aa11.77□□□□□ -0.53
NFKB1-212ENST00000600343 PTPRCP08575 1304 aa11.77□□□□□ -0.53
NFKB1-212ENST00000600343 NPHP1O15259 732 aa11.77□□□□□ -0.53
NFKB1-212ENST00000600343 UHRF1BP1Q6BDS2 1440 aa11.77□□□□□ -0.53
NFKB1-212ENST00000600343 CCDC189A1A4V9 331 aa11.76□□□□□ -0.53
NFKB1-212ENST00000600343 MAGEA9P43362 315 aa11.76□□□□□ -0.53
NFKB1-212ENST00000600343 ST5P78524 1137 aa11.76□□□□□ -0.53
NFKB1-212ENST00000600343 FHOD1Q9Y613 1164 aa11.76□□□□□ -0.53
NFKB1-212ENST00000600343 PLEKHG2Q9H7P9 1386 aa11.76□□□□□ -0.53
NFKB1-212ENST00000600343 HDAC1Q13547 482 aaPredicted RBP11.76□□□□□ -0.53
NFKB1-212ENST00000600343 RNF20Q5VTR2 975 aa11.76□□□□□ -0.53
NFKB1-212ENST00000600343 FBXO18Q8NFZ0 1043 aa11.76□□□□□ -0.53
NFKB1-212ENST00000600343 GOLGA5Q8TBA6 731 aa11.76□□□□□ -0.53
NFKB1-212ENST00000600343 KDM2AQ9Y2K7 1162 aa11.76□□□□□ -0.53
NFKB1-212ENST00000600343 MCTP2Q6DN12 878 aa11.76□□□□□ -0.53
NFKB1-212ENST00000600343 LNPKQ9C0E8 428 aa11.76□□□□□ -0.53
NFKB1-212ENST00000600343 RBM28Q9NW13 759 aaKnown RBP11.76□□□□□ -0.53
NFKB1-212ENST00000600343 PLXNC1O60486 1568 aa11.76□□□□□ -0.53
NFKB1-212ENST00000600343 PLA2G4AP47712 749 aa11.76□□□□□ -0.53
NFKB1-212ENST00000600343 BMP2KLQ5H9B9 411 aa11.76□□□□□ -0.53
NFKB1-212ENST00000600343 PNMA6AP0CW24 399 aaPredicted RBP11.75□□□□□ -0.53
NFKB1-212ENST00000600343 TBC1D9Q6ZT07 1266 aa11.75□□□□□ -0.53
NFKB1-212ENST00000600343 FBXO3Q9UK99 471 aa11.75□□□□□ -0.53
NFKB1-212ENST00000600343 FGD5Q6ZNL6 1462 aa11.75□□□□□ -0.53
NFKB1-212ENST00000600343 PPP2R5AQ15172 486 aa11.75□□□□□ -0.53
NFKB1-212ENST00000600343 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.75□□□□□ -0.53
NFKB1-212ENST00000600343 GAPVD1Q14C86 1478 aa11.75□□□□□ -0.53
NFKB1-212ENST00000600343 CALRP27797 417 aaKnown RBP11.75□□□□□ -0.53
NFKB1-212ENST00000600343 SWT1Q5T5J6 900 aaKnown RBP11.75□□□□□ -0.53
NFKB1-212ENST00000600343 SUPT6HQ7KZ85 1726 aaKnown RBP11.74□□□□□ -0.53
NFKB1-212ENST00000600343 RPAINQ86UA6 219 aa11.74□□□□□ -0.53
NFKB1-212ENST00000600343 PPP1R12AO14974 1030 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms