RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 A0A0G2JS52 829 aa15.26■□□□□ 0.03
LIG1-211ENST00000596457 MYT1Q01538 1121 aa15.26■□□□□ 0.03
LIG1-211ENST00000596457 ARHGEF25Q86VW2 580 aa15.26■□□□□ 0.03
LIG1-211ENST00000596457 USP35Q9P2H5 1018 aa15.26■□□□□ 0.03
LIG1-211ENST00000596457 ZEB1P37275 1124 aaPredicted RBP15.25■□□□□ 0.03
LIG1-211ENST00000596457 NFAT5O94916 1531 aa15.25■□□□□ 0.03
LIG1-211ENST00000596457 LMO7Q8WWI1 1683 aa15.25■□□□□ 0.03
LIG1-211ENST00000596457 OVOS2A0A0J9YW53 1432 aa15.25■□□□□ 0.03
LIG1-211ENST00000596457 OVOS2Q6IE36 1432 aa15.25■□□□□ 0.03
LIG1-211ENST00000596457 COL18A1P39060 1754 aa15.24■□□□□ 0.03
LIG1-211ENST00000596457 AXIN2Q9Y2T1 843 aa15.24■□□□□ 0.03
LIG1-211ENST00000596457 CCDC7Q96M83 1385 aa15.24■□□□□ 0.03
LIG1-211ENST00000596457 CGNL1Q0VF96 1302 aa15.23■□□□□ 0.03
LIG1-211ENST00000596457 CSB-PGBD3P0DP91 1061 aa15.23■□□□□ 0.03
LIG1-211ENST00000596457 YY1P25490 414 aa15.23■□□□□ 0.03
LIG1-211ENST00000596457 LARP1Q6PKG0 1096 aaKnown RBP15.23■□□□□ 0.03
LIG1-211ENST00000596457 SEPT12Q8IYM1 358 aa15.23■□□□□ 0.03
LIG1-211ENST00000596457 AATKQ6ZMQ8 1374 aa15.23■□□□□ 0.03
LIG1-211ENST00000596457 WASHC2AQ641Q2 1341 aa15.22■□□□□ 0.03
LIG1-211ENST00000596457 CNGB1Q14028 1251 aaPredicted RBP15.22■□□□□ 0.03
LIG1-211ENST00000596457 FAM98CQ17RN3 349 aaKnown RBP15.22■□□□□ 0.03
LIG1-211ENST00000596457 KNSTRNQ9Y448 316 aa15.22■□□□□ 0.03
LIG1-211ENST00000596457 SPATA31A5Q5VU36 1347 aa15.21■□□□□ 0.03
LIG1-211ENST00000596457 SPATA31A7Q8IWB4 1347 aa15.21■□□□□ 0.03
LIG1-211ENST00000596457 TNNT2P45379 298 aaPredicted RBP15.21■□□□□ 0.03
LIG1-211ENST00000596457 AMPHP49418 695 aa15.21■□□□□ 0.03
LIG1-211ENST00000596457 RRS1Q15050 365 aaKnown RBP15.21■□□□□ 0.03
LIG1-211ENST00000596457 TOM1L2Q6ZVM7 507 aa15.21■□□□□ 0.03
LIG1-211ENST00000596457 BRWD3Q6RI45 1802 aa15.21■□□□□ 0.03
LIG1-211ENST00000596457 COL5A2P05997 1499 aaPredicted RBP15.2■□□□□ 0.02
LIG1-211ENST00000596457 LTV1Q96GA3 475 aaPredicted RBP15.2■□□□□ 0.02
LIG1-211ENST00000596457 SPATA31A1Q5TZJ5 1347 aa15.19■□□□□ 0.02
LIG1-211ENST00000596457 KRT27Q7Z3Y8 459 aa15.19■□□□□ 0.02
LIG1-211ENST00000596457 ANKRD26Q9UPS8 1709 aa15.19■□□□□ 0.02
LIG1-211ENST00000596457 MAP3K19Q56UN5 1328 aa15.18■□□□□ 0.02
LIG1-211ENST00000596457 PPM1GO15355 546 aaPredicted RBP15.18■□□□□ 0.02
LIG1-211ENST00000596457 BLMP54132 1417 aaPredicted RBP15.17■□□□□ 0.02
LIG1-211ENST00000596457 MAP2P11137 1827 aaKnown RBP15.17■□□□□ 0.02
LIG1-211ENST00000596457 SF3B2Q13435 895 aaKnown RBP15.17■□□□□ 0.02
LIG1-211ENST00000596457 ANKRD24Q8TF21 1146 aa15.17■□□□□ 0.02
LIG1-211ENST00000596457 IP6K1Q92551 441 aa15.17■□□□□ 0.02
LIG1-211ENST00000596457 CRB1P82279 1406 aa15.17■□□□□ 0.02
LIG1-211ENST00000596457 HOXC9P31274 260 aa15.16■□□□□ 0.02
LIG1-211ENST00000596457 MORC1Q86VD1 984 aa15.16■□□□□ 0.02
LIG1-211ENST00000596457 TCP11L2Q8N4U5 519 aa15.16■□□□□ 0.02
LIG1-211ENST00000596457 NLRP2Q9NX02 1062 aa15.16■□□□□ 0.02
LIG1-211ENST00000596457 WDR17Q8IZU2 1322 aa15.16■□□□□ 0.02
LIG1-211ENST00000596457 CC2D1BQ5T0F9 858 aaKnown RBP15.15■□□□□ 0.02
LIG1-211ENST00000596457 EMILIN1Q9Y6C2 1016 aa15.15■□□□□ 0.02
LIG1-211ENST00000596457 RGPD2P0DJD1 1756 aa15.13■□□□□ 0.01
LIG1-211ENST00000596457 ABCC6O95255 1503 aa15.13■□□□□ 0.01
LIG1-211ENST00000596457 BARGINQ6ZT62 677 aa15.13■□□□□ 0.01
LIG1-211ENST00000596457 THRAP3Q9Y2W1 955 aaKnown RBP15.13■□□□□ 0.01
LIG1-211ENST00000596457 PEAK1Q9H792 1746 aa15.12■□□□□ 0.01
LIG1-211ENST00000596457 PSDA5PKW4 1024 aaPredicted RBP15.12■□□□□ 0.01
LIG1-211ENST00000596457 PER1O15534 1290 aaPredicted RBP15.12■□□□□ 0.01
LIG1-211ENST00000596457 FAM182BQ5T319 152 aa15.12■□□□□ 0.01
LIG1-211ENST00000596457 ERBB3P21860 1342 aa15.12■□□□□ 0.01
LIG1-211ENST00000596457 NSD2O96028 1365 aa15.11■□□□□ 0.01
LIG1-211ENST00000596457 HSP90AB2PQ58FF8 381 aa15.11■□□□□ 0.01
LIG1-211ENST00000596457 AMER1Q5JTC6 1135 aaPredicted RBP15.11■□□□□ 0.01
LIG1-211ENST00000596457 DEFB132Q7Z7B7 95 aa15.11■□□□□ 0.01
LIG1-211ENST00000596457 CARD10Q9BWT7 1032 aa15.11■□□□□ 0.01
LIG1-211ENST00000596457 THSD7AQ9UPZ6 1657 aa15.11■□□□□ 0.01
LIG1-211ENST00000596457 PDE3BQ13370 1112 aa15.1■□□□□ 0.01
LIG1-211ENST00000596457 POLKQ9UBT6 870 aa15.1■□□□□ 0.01
LIG1-211ENST00000596457 WNK3Q9BYP7 1800 aa15.1■□□□□ 0.01
LIG1-211ENST00000596457 RTL1A6NKG5 1358 aa15.1■□□□□ 0.01
LIG1-211ENST00000596457 BAG6P46379 1132 aa15.09■□□□□ 0.01
LIG1-211ENST00000596457 FLT4P35916 1363 aa15.09■□□□□ 0.01
LIG1-211ENST00000596457 SENP3-EIF4A1A0A087X0R7 540 aa15.08■□□□□ 0
LIG1-211ENST00000596457 FAM196AQ6ZSG2 479 aa15.08■□□□□ 0
LIG1-211ENST00000596457 USHBP1Q8N6Y0 703 aa15.08■□□□□ 0
LIG1-211ENST00000596457 FAM208AQ9UK61 1670 aaKnown RBP15.08■□□□□ 0
LIG1-211ENST00000596457 SMG6Q86US8 1419 aaKnown RBP15.08■□□□□ 0
LIG1-211ENST00000596457 DDX10Q13206 875 aaKnown RBP15.07■□□□□ 0
LIG1-211ENST00000596457 DDB1Q16531 1140 aa15.07■□□□□ 0
LIG1-211ENST00000596457 INSRP06213 1382 aa15.07■□□□□ 0
LIG1-211ENST00000596457 RGPD1P0DJD0 1748 aa15.06■□□□□ 0
LIG1-211ENST00000596457 PARP4Q9UKK3 1724 aaKnown RBP15.06■□□□□ 0
LIG1-211ENST00000596457 EXOC5O00471 708 aa15.05■□□□□ -0
LIG1-211ENST00000596457 IL2RBP14784 551 aa15.05■□□□□ -0
LIG1-211ENST00000596457 NBPF6Q5VWK0 638 aa15.05■□□□□ -0
LIG1-211ENST00000596457 NBPF4Q96M43 638 aa15.05■□□□□ -0
LIG1-211ENST00000596457 CDCA7Q9BWT1 371 aaPredicted RBP15.05■□□□□ -0
LIG1-211ENST00000596457 LRRC37A3O60309 1634 aa15.04■□□□□ -0
LIG1-211ENST00000596457 KIF24Q5T7B8 1368 aa15.04■□□□□ -0
LIG1-211ENST00000596457 MTHFSP49914 203 aa15.02■□□□□ -0
LIG1-211ENST00000596457 EIF4A2Q14240 407 aaKnown RBP15.02■□□□□ -0
LIG1-211ENST00000596457 DISP2A7MBM2 1401 aa15.01□□□□□ -0.01
LIG1-211ENST00000596457 TATP17735 454 aaPredicted RBP15□□□□□ -0.01
LIG1-211ENST00000596457 MARCH10Q8NA82 808 aaPredicted RBP15□□□□□ -0.01
LIG1-211ENST00000596457 DDX54Q8TDD1 881 aaKnown RBP15□□□□□ -0.01
LIG1-211ENST00000596457 RAPGEF4Q8WZA2 1011 aa15□□□□□ -0.01
LIG1-211ENST00000596457 EYA1Q99502 592 aa15□□□□□ -0.01
LIG1-211ENST00000596457 NPC1L1Q9UHC9 1359 aa14.99□□□□□ -0.01
LIG1-211ENST00000596457 TRIM37O94972 964 aa14.99□□□□□ -0.01
LIG1-211ENST00000596457 PARD3Q8TEW0 1356 aa14.98□□□□□ -0.01
LIG1-211ENST00000596457 ZNF316A6NFI3 1004 aaPredicted RBP14.98□□□□□ -0.01
LIG1-211ENST00000596457 TNS1Q9HBL0 1735 aaKnown RBP14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms