RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 STRN4Q9NRL3 753 aa21.19■□□□□ 0.98
TRIM28-205ENST00000595028 MYOM1P52179 1685 aa21.18■□□□□ 0.98
TRIM28-205ENST00000595028 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.18■□□□□ 0.98
TRIM28-205ENST00000595028 SPATA31A1Q5TZJ5 1347 aa21.18■□□□□ 0.98
TRIM28-205ENST00000595028 AATKQ6ZMQ8 1374 aa21.18■□□□□ 0.98
TRIM28-205ENST00000595028 ABCC6O95255 1503 aa21.17■□□□□ 0.98
TRIM28-205ENST00000595028 ANKRD36BQ8N2N9 1353 aa21.16■□□□□ 0.98
TRIM28-205ENST00000595028 NME9Q86XW9 330 aa21.16■□□□□ 0.98
TRIM28-205ENST00000595028 KCNH5Q8NCM2 988 aa21.16■□□□□ 0.98
TRIM28-205ENST00000595028 CAMKK2Q96RR4 588 aa21.16■□□□□ 0.98
TRIM28-205ENST00000595028 OVOS2A0A0J9YW53 1432 aa21.15■□□□□ 0.98
TRIM28-205ENST00000595028 OVOS2Q6IE36 1432 aa21.15■□□□□ 0.98
TRIM28-205ENST00000595028 LTN1O94822 1766 aa21.15■□□□□ 0.98
TRIM28-205ENST00000595028 RGPD5Q99666 1765 aa21.15■□□□□ 0.98
TRIM28-205ENST00000595028 ZBTB7CA1YPR0 619 aa21.14■□□□□ 0.97
TRIM28-205ENST00000595028 EVA1CP58658 441 aa21.13■□□□□ 0.97
TRIM28-205ENST00000595028 CDCA8Q53HL2 280 aa21.13■□□□□ 0.97
TRIM28-205ENST00000595028 SOX12O15370 315 aa21.12■□□□□ 0.97
TRIM28-205ENST00000595028 LARP1Q6PKG0 1096 aaKnown RBP21.12■□□□□ 0.97
TRIM28-205ENST00000595028 ARHGEF25Q86VW2 580 aa21.12■□□□□ 0.97
TRIM28-205ENST00000595028 WNK3Q9BYP7 1800 aa21.12■□□□□ 0.97
TRIM28-205ENST00000595028 CRB1P82279 1406 aa21.12■□□□□ 0.97
TRIM28-205ENST00000595028 TRIM37O94972 964 aa21.11■□□□□ 0.97
TRIM28-205ENST00000595028 PARP4Q9UKK3 1724 aaKnown RBP21.1■□□□□ 0.97
TRIM28-205ENST00000595028 KIF20BQ96Q89 1820 aa21.1■□□□□ 0.97
TRIM28-205ENST00000595028 USP35Q9P2H5 1018 aa21.09■□□□□ 0.97
TRIM28-205ENST00000595028 PARD3Q8TEW0 1356 aa21.09■□□□□ 0.97
TRIM28-205ENST00000595028 RREB1Q92766 1687 aa21.09■□□□□ 0.97
TRIM28-205ENST00000595028 BARGINQ6ZT62 677 aa21.08■□□□□ 0.97
TRIM28-205ENST00000595028 NUP188Q5SRE5 1749 aa21.07■□□□□ 0.96
TRIM28-205ENST00000595028 APBA3O96018 575 aa21.07■□□□□ 0.96
TRIM28-205ENST00000595028 TCP11L2Q8N4U5 519 aa21.07■□□□□ 0.96
TRIM28-205ENST00000595028 AXIN2Q9Y2T1 843 aa21.07■□□□□ 0.96
TRIM28-205ENST00000595028 WDR17Q8IZU2 1322 aa21.06■□□□□ 0.96
TRIM28-205ENST00000595028 EIF4G2P78344 907 aaKnown RBP eCLIP21.06■□□□□ 0.96
TRIM28-205ENST00000595028 FAM196AQ6ZSG2 479 aa21.06■□□□□ 0.96
TRIM28-205ENST00000595028 LRRC37A3O60309 1634 aa21.05■□□□□ 0.96
TRIM28-205ENST00000595028 PPP1R1BQ9UD71 204 aaPredicted RBP21.05■□□□□ 0.96
TRIM28-205ENST00000595028 THRAP3Q9Y2W1 955 aaKnown RBP21.05■□□□□ 0.96
TRIM28-205ENST00000595028 DCAF8L1A6NGE4 600 aa21.04■□□□□ 0.96
TRIM28-205ENST00000595028 HSPA5P11021 654 aaKnown RBP21.04■□□□□ 0.96
TRIM28-205ENST00000595028 UTRNP46939 3433 aa21.02■□□□□ 0.96
TRIM28-205ENST00000595028 NBPF14Q5TI25 921 aa21.02■□□□□ 0.96
TRIM28-205ENST00000595028 TOM1L2Q6ZVM7 507 aa21.02■□□□□ 0.96
TRIM28-205ENST00000595028 SPON1Q9HCB6 807 aa21.02■□□□□ 0.96
TRIM28-205ENST00000595028 COG3Q96JB2 828 aa21.01■□□□□ 0.95
TRIM28-205ENST00000595028 FAM208AQ9UK61 1670 aaKnown RBP21■□□□□ 0.95
TRIM28-205ENST00000595028 NSD3Q9BZ95 1437 aa21■□□□□ 0.95
TRIM28-205ENST00000595028 KCNQ2O43526 872 aa20.99■□□□□ 0.95
TRIM28-205ENST00000595028 CSB-PGBD3P0DP91 1061 aa20.99■□□□□ 0.95
TRIM28-205ENST00000595028 ERBB3P21860 1342 aa20.99■□□□□ 0.95
TRIM28-205ENST00000595028 FYB1O15117 783 aa20.97■□□□□ 0.95
TRIM28-205ENST00000595028 CARD10Q9BWT7 1032 aa20.97■□□□□ 0.95
TRIM28-205ENST00000595028 PEAK1Q9H792 1746 aa20.97■□□□□ 0.95
TRIM28-205ENST00000595028 CCDC7Q96M83 1385 aa20.97■□□□□ 0.95
TRIM28-205ENST00000595028 PDE3BQ13370 1112 aa20.96■□□□□ 0.95
TRIM28-205ENST00000595028 GGNBP2Q9H3C7 697 aa20.96■□□□□ 0.95
TRIM28-205ENST00000595028 CARD14Q9BXL6 1004 aa20.95■□□□□ 0.94
TRIM28-205ENST00000595028 RTL1A6NKG5 1358 aa20.95■□□□□ 0.94
TRIM28-205ENST00000595028 ANKRD26Q9UPS8 1709 aa20.95■□□□□ 0.94
TRIM28-205ENST00000595028 ZNF784Q8NCA9 323 aaPredicted RBP20.94■□□□□ 0.94
TRIM28-205ENST00000595028 POLR3GLQ9BT43 218 aa20.94■□□□□ 0.94
TRIM28-205ENST00000595028 MAP3K19Q56UN5 1328 aa20.94■□□□□ 0.94
TRIM28-205ENST00000595028 IP6K1Q92551 441 aa20.93■□□□□ 0.94
TRIM28-205ENST00000595028 CDCA7Q9BWT1 371 aaPredicted RBP20.93■□□□□ 0.94
TRIM28-205ENST00000595028 ANKRD24Q8TF21 1146 aa20.92■□□□□ 0.94
TRIM28-205ENST00000595028 OVOS2A0A0G2JMS6 1433 aa20.92■□□□□ 0.94
TRIM28-205ENST00000595028 SENP3-EIF4A1A0A087X0R7 540 aa20.91■□□□□ 0.94
TRIM28-205ENST00000595028 DDB1Q16531 1140 aa20.91■□□□□ 0.94
TRIM28-205ENST00000595028 TNS2Q63HR2 1409 aa20.91■□□□□ 0.94
TRIM28-205ENST00000595028 SBF2Q86WG5 1849 aa20.9■□□□□ 0.94
TRIM28-205ENST00000595028 FBLN1P23142 703 aa20.9■□□□□ 0.94
TRIM28-205ENST00000595028 NLRP2Q9NX02 1062 aa20.9■□□□□ 0.94
TRIM28-205ENST00000595028 RGPD2P0DJD1 1756 aa20.9■□□□□ 0.94
TRIM28-205ENST00000595028 CGNL1Q0VF96 1302 aa20.89■□□□□ 0.93
TRIM28-205ENST00000595028 HOXC9P31274 260 aa20.89■□□□□ 0.93
TRIM28-205ENST00000595028 AMPHP49418 695 aa20.88■□□□□ 0.93
TRIM28-205ENST00000595028 RRS1Q15050 365 aaKnown RBP20.88■□□□□ 0.93
TRIM28-205ENST00000595028 IFFO2Q5TF58 517 aa20.87■□□□□ 0.93
TRIM28-205ENST00000595028 KIF24Q5T7B8 1368 aa20.86■□□□□ 0.93
TRIM28-205ENST00000595028 C11orf95C9JLR9 678 aaPredicted RBP20.86■□□□□ 0.93
TRIM28-205ENST00000595028 CASZ1Q86V15 1759 aa20.86■□□□□ 0.93
TRIM28-205ENST00000595028 LTV1Q96GA3 475 aaPredicted RBP20.85■□□□□ 0.93
TRIM28-205ENST00000595028 BCL9O00512 1426 aa20.85■□□□□ 0.93
TRIM28-205ENST00000595028 FLT4P35916 1363 aa20.85■□□□□ 0.93
TRIM28-205ENST00000595028 MAP2P11137 1827 aaKnown RBP20.83■□□□□ 0.93
TRIM28-205ENST00000595028 RGPD3A6NKT7 1758 aaPredicted RBP20.83■□□□□ 0.93
TRIM28-205ENST00000595028 RGPD4Q7Z3J3 1758 aa20.83■□□□□ 0.93
TRIM28-205ENST00000595028 IL2RBP14784 551 aa20.83■□□□□ 0.93
TRIM28-205ENST00000595028 SMG6Q86US8 1419 aaKnown RBP20.83■□□□□ 0.93
TRIM28-205ENST00000595028 KIF7Q2M1P5 1343 aa20.82■□□□□ 0.92
TRIM28-205ENST00000595028 C1QTNF8P60827 252 aa20.82■□□□□ 0.92
TRIM28-205ENST00000595028 MARCH10Q8NA82 808 aaPredicted RBP20.82■□□□□ 0.92
TRIM28-205ENST00000595028 PANK3Q9H999 370 aa20.82■□□□□ 0.92
TRIM28-205ENST00000595028 ANO8Q9HCE9 1232 aaPredicted RBP20.82■□□□□ 0.92
TRIM28-205ENST00000595028 INSRP06213 1382 aa20.82■□□□□ 0.92
TRIM28-205ENST00000595028 EXOC5O00471 708 aa20.81■□□□□ 0.92
TRIM28-205ENST00000595028 PDGFDQ9GZP0 370 aaPredicted RBP20.81■□□□□ 0.92
TRIM28-205ENST00000595028 NSD2O96028 1365 aa20.81■□□□□ 0.92
TRIM28-205ENST00000595028 CEP350Q5VT06 3117 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms