RNA–Protein interactions for RNA: ENST00000593026.1

DDX39A-221, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 657 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-221ENST00000593026 STRN4Q9NRL3 753 aa20.4■□□□□ 0.86
DDX39A-221ENST00000593026 ZNF316A6NFI3 1004 aaPredicted RBP20.39■□□□□ 0.85
DDX39A-221ENST00000593026 COL5A2P05997 1499 aaPredicted RBP20.38■□□□□ 0.85
DDX39A-221ENST00000593026 RXRBP28702 533 aa20.38■□□□□ 0.85
DDX39A-221ENST00000593026 EVA1CP58658 441 aa20.38■□□□□ 0.85
DDX39A-221ENST00000593026 RRS1Q15050 365 aaKnown RBP20.38■□□□□ 0.85
DDX39A-221ENST00000593026 VPS72Q15906 364 aa20.38■□□□□ 0.85
DDX39A-221ENST00000593026 MORC1Q86VD1 984 aa20.38■□□□□ 0.85
DDX39A-221ENST00000593026 AXIN2Q9Y2T1 843 aa20.38■□□□□ 0.85
DDX39A-221ENST00000593026 CCDC9Q9Y3X0 531 aaKnown RBP20.38■□□□□ 0.85
DDX39A-221ENST00000593026 NPC1L1Q9UHC9 1359 aa20.37■□□□□ 0.85
DDX39A-221ENST00000593026 TNNT2P45379 298 aaPredicted RBP20.37■□□□□ 0.85
DDX39A-221ENST00000593026 CC2D1BQ5T0F9 858 aaKnown RBP20.37■□□□□ 0.85
DDX39A-221ENST00000593026 RGPD5Q99666 1765 aa20.36■□□□□ 0.85
DDX39A-221ENST00000593026 AMPHP49418 695 aa20.36■□□□□ 0.85
DDX39A-221ENST00000593026 DDX10Q13206 875 aaKnown RBP20.36■□□□□ 0.85
DDX39A-221ENST00000593026 BLMP54132 1417 aaPredicted RBP20.36■□□□□ 0.85
DDX39A-221ENST00000593026 RTL1A6NKG5 1358 aa20.35■□□□□ 0.85
DDX39A-221ENST00000593026 RBM6P78332 1123 aaKnown RBP20.35■□□□□ 0.85
DDX39A-221ENST00000593026 IP6K1Q92551 441 aa20.35■□□□□ 0.85
DDX39A-221ENST00000593026 GJD4Q96KN9 370 aaPredicted RBP20.35■□□□□ 0.85
DDX39A-221ENST00000593026 HOXC9P31274 260 aa20.34■□□□□ 0.85
DDX39A-221ENST00000593026 CNGB1Q14028 1251 aaPredicted RBP20.34■□□□□ 0.85
DDX39A-221ENST00000593026 GLI3P10071 1580 aa20.34■□□□□ 0.85
DDX39A-221ENST00000593026 KIF24Q5T7B8 1368 aa20.34■□□□□ 0.85
DDX39A-221ENST00000593026 PEAK1Q9H792 1746 aa20.33■□□□□ 0.84
DDX39A-221ENST00000593026 MAP2P11137 1827 aaKnown RBP20.32■□□□□ 0.84
DDX39A-221ENST00000593026 SPATA31A5Q5VU36 1347 aa20.32■□□□□ 0.84
DDX39A-221ENST00000593026 SPATA31A7Q8IWB4 1347 aa20.32■□□□□ 0.84
DDX39A-221ENST00000593026 CSB-PGBD3P0DP91 1061 aa20.32■□□□□ 0.84
DDX39A-221ENST00000593026 LARP1Q6PKG0 1096 aaKnown RBP20.32■□□□□ 0.84
DDX39A-221ENST00000593026 EMILIN1Q9Y6C2 1016 aa20.32■□□□□ 0.84
DDX39A-221ENST00000593026 FLT4P35916 1363 aa20.32■□□□□ 0.84
DDX39A-221ENST00000593026 WDR17Q8IZU2 1322 aa20.31■□□□□ 0.84
DDX39A-221ENST00000593026 CRB1P82279 1406 aa20.31■□□□□ 0.84
DDX39A-221ENST00000593026 PPM1GO15355 546 aaPredicted RBP20.31■□□□□ 0.84
DDX39A-221ENST00000593026 POLKQ9UBT6 870 aa20.31■□□□□ 0.84
DDX39A-221ENST00000593026 CDK12Q9NYV4 1490 aaPredicted RBP20.3■□□□□ 0.84
DDX39A-221ENST00000593026 ERBB3P21860 1342 aa20.3■□□□□ 0.84
DDX39A-221ENST00000593026 SPATA31A1Q5TZJ5 1347 aa20.3■□□□□ 0.84
DDX39A-221ENST00000593026 ANKRD24Q8TF21 1146 aa20.3■□□□□ 0.84
DDX39A-221ENST00000593026 TOM1L2Q6ZVM7 507 aa20.29■□□□□ 0.84
DDX39A-221ENST00000593026 LTV1Q96GA3 475 aaPredicted RBP20.28■□□□□ 0.84
DDX39A-221ENST00000593026 USP35Q9P2H5 1018 aa20.28■□□□□ 0.84
DDX39A-221ENST00000593026 INSRP06213 1382 aa20.28■□□□□ 0.84
DDX39A-221ENST00000593026 SMG6Q86US8 1419 aaKnown RBP20.27■□□□□ 0.84
DDX39A-221ENST00000593026 FAM208AQ9UK61 1670 aaKnown RBP20.27■□□□□ 0.84
DDX39A-221ENST00000593026 RGS12O14924 1447 aa20.27■□□□□ 0.83
DDX39A-221ENST00000593026 HSP90AB2PQ58FF8 381 aa20.26■□□□□ 0.83
DDX39A-221ENST00000593026 FAM98CQ17RN3 349 aaKnown RBP20.25■□□□□ 0.83
DDX39A-221ENST00000593026 TCP11L2Q8N4U5 519 aa20.25■□□□□ 0.83
DDX39A-221ENST00000593026 CARD10Q9BWT7 1032 aa20.25■□□□□ 0.83
DDX39A-221ENST00000593026 NLRP2Q9NX02 1062 aa20.25■□□□□ 0.83
DDX39A-221ENST00000593026 THRAP3Q9Y2W1 955 aaKnown RBP20.24■□□□□ 0.83
DDX39A-221ENST00000593026 A0A0G2JS52 829 aa20.23■□□□□ 0.83
DDX39A-221ENST00000593026 MYT1Q01538 1121 aa20.23■□□□□ 0.83
DDX39A-221ENST00000593026 BARGINQ6ZT62 677 aa20.23■□□□□ 0.83
DDX39A-221ENST00000593026 ONECUT3O60422 494 aaPredicted RBP20.22■□□□□ 0.83
DDX39A-221ENST00000593026 MTHFSP49914 203 aa20.21■□□□□ 0.83
DDX39A-221ENST00000593026 SEPT12Q8IYM1 358 aa20.21■□□□□ 0.83
DDX39A-221ENST00000593026 THSD7AQ9UPZ6 1657 aa20.21■□□□□ 0.83
DDX39A-221ENST00000593026 PARD3Q8TEW0 1356 aa20.21■□□□□ 0.83
DDX39A-221ENST00000593026 RGPD2P0DJD1 1756 aa20.2■□□□□ 0.82
DDX39A-221ENST00000593026 WNK3Q9BYP7 1800 aa20.2■□□□□ 0.82
DDX39A-221ENST00000593026 PPP2R1AP30153 589 aa20.17■□□□□ 0.82
DDX39A-221ENST00000593026 EIF4A2Q14240 407 aaKnown RBP20.17■□□□□ 0.82
DDX39A-221ENST00000593026 NBPF6Q5VWK0 638 aa20.17■□□□□ 0.82
DDX39A-221ENST00000593026 NBPF4Q96M43 638 aa20.17■□□□□ 0.82
DDX39A-221ENST00000593026 RALBP1Q15311 655 aa20.16■□□□□ 0.82
DDX39A-221ENST00000593026 CDCA7Q9BWT1 371 aaPredicted RBP20.16■□□□□ 0.82
DDX39A-221ENST00000593026 DISP2A7MBM2 1401 aa20.16■□□□□ 0.82
DDX39A-221ENST00000593026 PARP4Q9UKK3 1724 aaKnown RBP20.16■□□□□ 0.82
DDX39A-221ENST00000593026 BRWD3Q6RI45 1802 aa20.16■□□□□ 0.82
DDX39A-221ENST00000593026 USHBP1Q8N6Y0 703 aa20.15■□□□□ 0.82
DDX39A-221ENST00000593026 LRRC37A3O60309 1634 aa20.13■□□□□ 0.81
DDX39A-221ENST00000593026 IL2RBP14784 551 aa20.13■□□□□ 0.81
DDX39A-221ENST00000593026 KRT27Q7Z3Y8 459 aa20.13■□□□□ 0.81
DDX39A-221ENST00000593026 UPF1Q92900 1129 aaKnown RBP eCLIP20.13■□□□□ 0.81
DDX39A-221ENST00000593026 CFAP53Q96M91 514 aa20.13■□□□□ 0.81
DDX39A-221ENST00000593026 EYA1Q99502 592 aa20.13■□□□□ 0.81
DDX39A-221ENST00000593026 NCAPD2Q15021 1401 aa20.11■□□□□ 0.81
DDX39A-221ENST00000593026 DDB1Q16531 1140 aa20.11■□□□□ 0.81
DDX39A-221ENST00000593026 COL3A1P02461 1466 aaPredicted RBP20.11■□□□□ 0.81
DDX39A-221ENST00000593026 IGSF1Q8N6C5 1336 aa20.1■□□□□ 0.81
DDX39A-221ENST00000593026 DIAPH1O60610 1272 aaKnown RBP20.1■□□□□ 0.81
DDX39A-221ENST00000593026 IL13P35225 146 aa20.1■□□□□ 0.81
DDX39A-221ENST00000593026 PDE3BQ13370 1112 aa20.1■□□□□ 0.81
DDX39A-221ENST00000593026 RAPGEF4Q8WZA2 1011 aa20.1■□□□□ 0.81
DDX39A-221ENST00000593026 MYBBP1AQ9BQG0 1328 aaKnown RBP20.09■□□□□ 0.81
DDX39A-221ENST00000593026 MEGF6O75095 1541 aa20.09■□□□□ 0.81
DDX39A-221ENST00000593026 PRKRIP1Q9H875 184 aaPredicted RBP20.09■□□□□ 0.81
DDX39A-221ENST00000593026 RGPD1P0DJD0 1748 aa20.09■□□□□ 0.81
DDX39A-221ENST00000593026 TNS2Q63HR2 1409 aa20.09■□□□□ 0.81
DDX39A-221ENST00000593026 EXOC5O00471 708 aa20.08■□□□□ 0.81
DDX39A-221ENST00000593026 TATP17735 454 aaPredicted RBP20.07■□□□□ 0.8
DDX39A-221ENST00000593026 OVOS2A0A0G2JMS6 1433 aa20.07■□□□□ 0.8
DDX39A-221ENST00000593026 U2SURPO15042 1029 aaKnown RBP20.04■□□□□ 0.8
DDX39A-221ENST00000593026 FAM182BQ5T319 152 aa20.04■□□□□ 0.8
DDX39A-221ENST00000593026 SULT6B1Q6IMI4 303 aa20.03■□□□□ 0.8
DDX39A-221ENST00000593026 NUDCQ9Y266 331 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms