RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 MAP2P11137 1827 aaKnown RBP18.38■□□□□ 0.53
VMP1-210ENST00000589823 HOXC9P31274 260 aa18.38■□□□□ 0.53
VMP1-210ENST00000589823 MTHFSP49914 203 aa18.38■□□□□ 0.53
VMP1-210ENST00000589823 SMG6Q86US8 1419 aaKnown RBP18.38■□□□□ 0.53
VMP1-210ENST00000589823 BTG4Q9NY30 223 aa18.37■□□□□ 0.53
VMP1-210ENST00000589823 BLMP54132 1417 aaPredicted RBP18.37■□□□□ 0.53
VMP1-210ENST00000589823 LMO7Q8WWI1 1683 aa18.35■□□□□ 0.53
VMP1-210ENST00000589823 AFF2P51816 1311 aa18.35■□□□□ 0.53
VMP1-210ENST00000589823 EVA1CP58658 441 aa18.35■□□□□ 0.53
VMP1-210ENST00000589823 FNBP4Q8N3X1 1017 aaPredicted RBP18.35■□□□□ 0.53
VMP1-210ENST00000589823 CFAP53Q96M91 514 aa18.35■□□□□ 0.53
VMP1-210ENST00000589823 AXIN2Q9Y2T1 843 aa18.35■□□□□ 0.53
VMP1-210ENST00000589823 COL18A1P39060 1754 aa18.35■□□□□ 0.53
VMP1-210ENST00000589823 PEAK1Q9H792 1746 aa18.35■□□□□ 0.53
VMP1-210ENST00000589823 PLCH1Q4KWH8 1693 aa18.34■□□□□ 0.53
VMP1-210ENST00000589823 SLIT2O94813 1529 aa18.34■□□□□ 0.53
VMP1-210ENST00000589823 CDK12Q9NYV4 1490 aaPredicted RBP18.34■□□□□ 0.53
VMP1-210ENST00000589823 INSRP06213 1382 aa18.34■□□□□ 0.53
VMP1-210ENST00000589823 HSP90AB2PQ58FF8 381 aa18.34■□□□□ 0.53
VMP1-210ENST00000589823 CAMTA1Q9Y6Y1 1673 aa18.34■□□□□ 0.53
VMP1-210ENST00000589823 ANKRD24Q8TF21 1146 aa18.33■□□□□ 0.52
VMP1-210ENST00000589823 STRN4Q9NRL3 753 aa18.33■□□□□ 0.52
VMP1-210ENST00000589823 USP21Q9UK80 565 aa18.33■□□□□ 0.52
VMP1-210ENST00000589823 NWD2Q9ULI1 1742 aa18.32■□□□□ 0.52
VMP1-210ENST00000589823 CSB-PGBD3P0DP91 1061 aa18.32■□□□□ 0.52
VMP1-210ENST00000589823 UNC5CLQ8IV45 518 aa18.32■□□□□ 0.52
VMP1-210ENST00000589823 LTV1Q96GA3 475 aaPredicted RBP18.32■□□□□ 0.52
VMP1-210ENST00000589823 COL5A2P05997 1499 aaPredicted RBP18.32■□□□□ 0.52
VMP1-210ENST00000589823 PHF23Q9BUL5 403 aaPredicted RBP18.31■□□□□ 0.52
VMP1-210ENST00000589823 ERBB3P21860 1342 aa18.3■□□□□ 0.52
VMP1-210ENST00000589823 RGPD5Q99666 1765 aa18.3■□□□□ 0.52
VMP1-210ENST00000589823 WDR17Q8IZU2 1322 aa18.29■□□□□ 0.52
VMP1-210ENST00000589823 BCL9LQ86UU0 1499 aa18.29■□□□□ 0.52
VMP1-210ENST00000589823 ZNF772Q68DY9 489 aaPredicted RBP18.29■□□□□ 0.52
VMP1-210ENST00000589823 DIAPH1O60610 1272 aaKnown RBP18.28■□□□□ 0.52
VMP1-210ENST00000589823 EIF4A2Q14240 407 aaKnown RBP18.28■□□□□ 0.52
VMP1-210ENST00000589823 TOM1L2Q6ZVM7 507 aa18.28■□□□□ 0.52
VMP1-210ENST00000589823 CCDC9Q9Y3X0 531 aaKnown RBP18.28■□□□□ 0.52
VMP1-210ENST00000589823 NRAPQ86VF7 1730 aa18.28■□□□□ 0.52
VMP1-210ENST00000589823 LARP1Q6PKG0 1096 aaKnown RBP18.27■□□□□ 0.52
VMP1-210ENST00000589823 NLRP2Q9NX02 1062 aa18.27■□□□□ 0.52
VMP1-210ENST00000589823 TRPC5Q9UL62 973 aaPredicted RBP18.27■□□□□ 0.52
VMP1-210ENST00000589823 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.26■□□□□ 0.51
VMP1-210ENST00000589823 CRB1P82279 1406 aa18.26■□□□□ 0.51
VMP1-210ENST00000589823 VPS72Q15906 364 aa18.26■□□□□ 0.51
VMP1-210ENST00000589823 NUDCQ9Y266 331 aa18.26■□□□□ 0.51
VMP1-210ENST00000589823 COL3A1P02461 1466 aaPredicted RBP18.26■□□□□ 0.51
VMP1-210ENST00000589823 IL13P35225 146 aa18.25■□□□□ 0.51
VMP1-210ENST00000589823 FAM208AQ9UK61 1670 aaKnown RBP18.25■□□□□ 0.51
VMP1-210ENST00000589823 CARD10Q9BWT7 1032 aa18.24■□□□□ 0.51
VMP1-210ENST00000589823 QTRT2Q9H974 415 aaKnown RBP18.24■□□□□ 0.51
VMP1-210ENST00000589823 U2SURPO15042 1029 aaKnown RBP18.23■□□□□ 0.51
VMP1-210ENST00000589823 MIER1Q8N108 512 aa18.23■□□□□ 0.51
VMP1-210ENST00000589823 ATRNO75882 1429 aa18.23■□□□□ 0.51
VMP1-210ENST00000589823 SPATA31A5Q5VU36 1347 aa18.23■□□□□ 0.51
VMP1-210ENST00000589823 SPATA31A7Q8IWB4 1347 aa18.23■□□□□ 0.51
VMP1-210ENST00000589823 NBPF6Q5VWK0 638 aa18.22■□□□□ 0.51
VMP1-210ENST00000589823 NBPF4Q96M43 638 aa18.22■□□□□ 0.51
VMP1-210ENST00000589823 EYA1Q99502 592 aa18.22■□□□□ 0.51
VMP1-210ENST00000589823 MRS2Q9HD23 443 aa18.22■□□□□ 0.51
VMP1-210ENST00000589823 USP35Q9P2H5 1018 aa18.22■□□□□ 0.51
VMP1-210ENST00000589823 SPATA31A1Q5TZJ5 1347 aa18.22■□□□□ 0.51
VMP1-210ENST00000589823 GJD4Q96KN9 370 aaPredicted RBP18.21■□□□□ 0.51
VMP1-210ENST00000589823 IGSF1Q8N6C5 1336 aa18.21■□□□□ 0.51
VMP1-210ENST00000589823 CCER2I3L3R5 266 aa18.2■□□□□ 0.5
VMP1-210ENST00000589823 TCP11L2Q8N4U5 519 aa18.2■□□□□ 0.5
VMP1-210ENST00000589823 USHBP1Q8N6Y0 703 aa18.2■□□□□ 0.5
VMP1-210ENST00000589823 RGS17Q9UGC6 210 aaPredicted RBP18.2■□□□□ 0.5
VMP1-210ENST00000589823 THRAP3Q9Y2W1 955 aaKnown RBP18.2■□□□□ 0.5
VMP1-210ENST00000589823 WDR43Q15061 677 aaKnown RBP eCLIP18.19■□□□□ 0.5
VMP1-210ENST00000589823 U2AF1L5P0DN76 240 aaPredicted RBP18.18■□□□□ 0.5
VMP1-210ENST00000589823 U2AF1Q01081 240 aaKnown RBP eCLIP18.18■□□□□ 0.5
VMP1-210ENST00000589823 CCDC184Q52MB2 194 aa18.18■□□□□ 0.5
VMP1-210ENST00000589823 SULT6B1Q6IMI4 303 aa18.18■□□□□ 0.5
VMP1-210ENST00000589823 RBM6P78332 1123 aaKnown RBP18.17■□□□□ 0.5
VMP1-210ENST00000589823 RGPD2P0DJD1 1756 aa18.17■□□□□ 0.5
VMP1-210ENST00000589823 RGPD1P0DJD0 1748 aa18.16■□□□□ 0.5
VMP1-210ENST00000589823 HMOX1P09601 288 aa18.16■□□□□ 0.5
VMP1-210ENST00000589823 RXRBP28702 533 aa18.16■□□□□ 0.5
VMP1-210ENST00000589823 BARGINQ6ZT62 677 aa18.16■□□□□ 0.5
VMP1-210ENST00000589823 RAPGEF4Q8WZA2 1011 aa18.16■□□□□ 0.5
VMP1-210ENST00000589823 NCAPD2Q15021 1401 aa18.15■□□□□ 0.5
VMP1-210ENST00000589823 IL2RBP14784 551 aa18.15■□□□□ 0.5
VMP1-210ENST00000589823 TATP17735 454 aaPredicted RBP18.15■□□□□ 0.5
VMP1-210ENST00000589823 FAM98CQ17RN3 349 aaKnown RBP18.15■□□□□ 0.5
VMP1-210ENST00000589823 POTEAQ6S8J7 498 aa18.15■□□□□ 0.5
VMP1-210ENST00000589823 CDCA7Q9BWT1 371 aaPredicted RBP18.15■□□□□ 0.5
VMP1-210ENST00000589823 GLI3P10071 1580 aa18.14■□□□□ 0.49
VMP1-210ENST00000589823 A0A0G2JS52 829 aa18.14■□□□□ 0.49
VMP1-210ENST00000589823 MYT1Q01538 1121 aa18.14■□□□□ 0.49
VMP1-210ENST00000589823 AEBP1Q8IUX7 1158 aa18.14■□□□□ 0.49
VMP1-210ENST00000589823 PNNQ9H307 717 aaKnown RBP18.13■□□□□ 0.49
VMP1-210ENST00000589823 KDRP35968 1356 aa18.13■□□□□ 0.49
VMP1-210ENST00000589823 FCHSD2O94868 740 aa18.12■□□□□ 0.49
VMP1-210ENST00000589823 PNISRQ8TF01 805 aaKnown RBP18.12■□□□□ 0.49
VMP1-210ENST00000589823 NEFMP07197 916 aa18.11■□□□□ 0.49
VMP1-210ENST00000589823 DISP2A7MBM2 1401 aa18.11■□□□□ 0.49
VMP1-210ENST00000589823 MEGF6O75095 1541 aa18.1■□□□□ 0.49
VMP1-210ENST00000589823 RSPH6AQ9H0K4 717 aa18.1■□□□□ 0.49
VMP1-210ENST00000589823 ADAMTS8Q9UP79 889 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 118.4 ms