RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 NUP188Q5SRE5 1749 aa15.15■□□□□ 0.02
RFFL-209ENST00000581265 TOM1L2Q6ZVM7 507 aa15.15■□□□□ 0.02
RFFL-209ENST00000581265 TTC21AQ8NDW8 1320 aa15.15■□□□□ 0.02
RFFL-209ENST00000581265 CPSF1Q10570 1443 aaKnown RBP15.14■□□□□ 0.01
RFFL-209ENST00000581265 WDR17Q8IZU2 1322 aa15.14■□□□□ 0.01
RFFL-209ENST00000581265 ZBTB7AO95365 584 aa15.13■□□□□ 0.01
RFFL-209ENST00000581265 DDB1Q16531 1140 aa15.13■□□□□ 0.01
RFFL-209ENST00000581265 CDCA7Q9BWT1 371 aaPredicted RBP15.13■□□□□ 0.01
RFFL-209ENST00000581265 BCL11BQ9C0K0 894 aaPredicted RBP15.13■□□□□ 0.01
RFFL-209ENST00000581265 PARP4Q9UKK3 1724 aaKnown RBP15.12■□□□□ 0.01
RFFL-209ENST00000581265 ATF5Q9Y2D1 282 aaPredicted RBP15.12■□□□□ 0.01
RFFL-209ENST00000581265 PIK3C2AO00443 1686 aa15.12■□□□□ 0.01
RFFL-209ENST00000581265 SBNO2Q9Y2G9 1366 aa15.11■□□□□ 0.01
RFFL-209ENST00000581265 COL18A1P39060 1754 aa15.11■□□□□ 0.01
RFFL-209ENST00000581265 PLSCR1O15162 318 aa15.11■□□□□ 0.01
RFFL-209ENST00000581265 CARD10Q9BWT7 1032 aa15.11■□□□□ 0.01
RFFL-209ENST00000581265 KTN1Q86UP2 1357 aaKnown RBP15.11■□□□□ 0.01
RFFL-209ENST00000581265 OVOS2A0A0G2JMS6 1433 aa15.1■□□□□ 0.01
RFFL-209ENST00000581265 OVOS2A0A0J9YW53 1432 aa15.1■□□□□ 0.01
RFFL-209ENST00000581265 OVOS2Q6IE36 1432 aa15.1■□□□□ 0.01
RFFL-209ENST00000581265 GIGYF1O75420 1035 aaPredicted RBP15.1■□□□□ 0.01
RFFL-209ENST00000581265 MARCH10Q8NA82 808 aaPredicted RBP15.09■□□□□ 0.01
RFFL-209ENST00000581265 CARD11Q9BXL7 1154 aa15.09■□□□□ 0.01
RFFL-209ENST00000581265 FHDC1Q9C0D6 1143 aaPredicted RBP15.09■□□□□ 0.01
RFFL-209ENST00000581265 SOX12O15370 315 aa15.08■□□□□ 0
RFFL-209ENST00000581265 SYT17Q9BSW7 474 aa15.08■□□□□ 0
RFFL-209ENST00000581265 PEAK1Q9H792 1746 aa15.08■□□□□ 0
RFFL-209ENST00000581265 USP31Q70CQ4 1352 aa15.08■□□□□ 0
RFFL-209ENST00000581265 BCL9O00512 1426 aa15.08■□□□□ 0
RFFL-209ENST00000581265 AKAP12Q02952 1782 aa15.07■□□□□ 0
RFFL-209ENST00000581265 CSB-PGBD3P0DP91 1061 aa15.07■□□□□ 0
RFFL-209ENST00000581265 STK32BQ9NY57 414 aa15.07■□□□□ 0
RFFL-209ENST00000581265 EXOC5O00471 708 aa15.06■□□□□ 0
RFFL-209ENST00000581265 PTF1AQ7RTS3 328 aa15.06■□□□□ 0
RFFL-209ENST00000581265 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.06■□□□□ 03e-6■■□□□ 13.9
RFFL-209ENST00000581265 PUS7Q96PZ0 661 aaKnown RBP15.06■□□□□ 0
RFFL-209ENST00000581265 ANO8Q9HCE9 1232 aaPredicted RBP15.06■□□□□ 0
RFFL-209ENST00000581265 PTGER2P43116 358 aa15.05■□□□□ -0
RFFL-209ENST00000581265 GPR162Q16538 588 aa15.05■□□□□ -0
RFFL-209ENST00000581265 PROM2Q8N271 834 aa15.05■□□□□ -0
RFFL-209ENST00000581265 PDGFDQ9GZP0 370 aaPredicted RBP15.05■□□□□ -0
RFFL-209ENST00000581265 SLC12A5Q9H2X9 1139 aa15.05■□□□□ -0
RFFL-209ENST00000581265 CCDC7Q96M83 1385 aa15.05■□□□□ -0
RFFL-209ENST00000581265 NFAT5O94916 1531 aa15.05■□□□□ -0
RFFL-209ENST00000581265 LRRC37A3O60309 1634 aa15.05■□□□□ -0
RFFL-209ENST00000581265 NME9Q86XW9 330 aa15.04■□□□□ -0
RFFL-209ENST00000581265 TMC1Q8TDI8 760 aa15.04■□□□□ -0
RFFL-209ENST00000581265 CD163L1Q9NR16 1453 aa15.03■□□□□ -0
RFFL-209ENST00000581265 HDGFL2Q7Z4V5 671 aaPredicted RBP15.03■□□□□ -0
RFFL-209ENST00000581265 SBF2Q86WG5 1849 aa15.03■□□□□ -0
RFFL-209ENST00000581265 MYOM1P52179 1685 aa15.03■□□□□ -0
RFFL-209ENST00000581265 ABCC6O95255 1503 aa15.02■□□□□ -0
RFFL-209ENST00000581265 TERF2IPQ9NYB0 399 aa15.02■□□□□ -0
RFFL-209ENST00000581265 RGPD5Q99666 1765 aa15.02□□□□□ -0.01
RFFL-209ENST00000581265 MON2Q7Z3U7 1717 aa15.01□□□□□ -0.01
RFFL-209ENST00000581265 ERBB3P21860 1342 aa15.01□□□□□ -0.01
RFFL-209ENST00000581265 PELP1Q8IZL8 1130 aaKnown RBP15.01□□□□□ -0.01
RFFL-209ENST00000581265 MTFR1LQ9H019 292 aa15.01□□□□□ -0.01
RFFL-209ENST00000581265 RGPD3A6NKT7 1758 aaPredicted RBP15.01□□□□□ -0.01
RFFL-209ENST00000581265 RGPD4Q7Z3J3 1758 aa15.01□□□□□ -0.01
RFFL-209ENST00000581265 TONSLQ96HA7 1378 aa15□□□□□ -0.01
RFFL-209ENST00000581265 ARXQ96QS3 562 aa15□□□□□ -0.01
RFFL-209ENST00000581265 NLRP2Q9NX02 1062 aa15□□□□□ -0.01
RFFL-209ENST00000581265 EDC4Q6P2E9 1401 aaKnown RBP15□□□□□ -0.01
RFFL-209ENST00000581265 CASZ1Q86V15 1759 aa14.99□□□□□ -0.01
RFFL-209ENST00000581265 SLC24A1O60721 1099 aa14.99□□□□□ -0.01
RFFL-209ENST00000581265 SLC15A2Q16348 729 aa14.99□□□□□ -0.01
RFFL-209ENST00000581265 TXNRD1Q16881 649 aa14.99□□□□□ -0.01
RFFL-209ENST00000581265 KLHL34Q8N239 644 aa14.99□□□□□ -0.01
RFFL-209ENST00000581265 CHD4Q14839 1912 aa14.98□□□□□ -0.01
RFFL-209ENST00000581265 IL2RBP14784 551 aa14.98□□□□□ -0.01
RFFL-209ENST00000581265 TESK2Q96S53 571 aa14.98□□□□□ -0.01
RFFL-209ENST00000581265 WNK3Q9BYP7 1800 aa14.98□□□□□ -0.01
RFFL-209ENST00000581265 A0A1W2PP64 1363 aa14.98□□□□□ -0.01
RFFL-209ENST00000581265 USP54Q70EL1 1684 aa14.97□□□□□ -0.01
RFFL-209ENST00000581265 ANKRD24Q8TF21 1146 aa14.97□□□□□ -0.01
RFFL-209ENST00000581265 TNS2Q63HR2 1409 aa14.97□□□□□ -0.01
RFFL-209ENST00000581265 ST20-MTHFSA0A0A6YYL1 179 aa14.96□□□□□ -0.01
RFFL-209ENST00000581265 IP6K1Q92551 441 aa14.96□□□□□ -0.01
RFFL-209ENST00000581265 ACSBG1Q96GR2 724 aa14.93□□□□□ -0.02
RFFL-209ENST00000581265 COG3Q96JB2 828 aa14.92□□□□□ -0.02
RFFL-209ENST00000581265 LTN1O94822 1766 aa14.91□□□□□ -0.02
RFFL-209ENST00000581265 SGIP1Q9BQI5 828 aa14.91□□□□□ -0.02
RFFL-209ENST00000581265 POLD1P28340 1107 aa14.9□□□□□ -0.02
RFFL-209ENST00000581265 MAP3K19Q56UN5 1328 aa14.9□□□□□ -0.02
RFFL-209ENST00000581265 MAP3K5Q99683 1374 aa14.89□□□□□ -0.03
RFFL-209ENST00000581265 HOXC9P31274 260 aa14.89□□□□□ -0.03
RFFL-209ENST00000581265 LTV1Q96GA3 475 aaPredicted RBP14.89□□□□□ -0.03
RFFL-209ENST00000581265 NHSQ6T4R5 1651 aa14.88□□□□□ -0.03
RFFL-209ENST00000581265 FBLN1P23142 703 aa14.88□□□□□ -0.03
RFFL-209ENST00000581265 AMPHP49418 695 aa14.88□□□□□ -0.03
RFFL-209ENST00000581265 DDX54Q8TDD1 881 aaKnown RBP14.88□□□□□ -0.03
RFFL-209ENST00000581265 KAT6BQ8WYB5 2073 aa14.88□□□□□ -0.03
RFFL-209ENST00000581265 ANKRD36BQ8N2N9 1353 aa14.87□□□□□ -0.03
RFFL-209ENST00000581265 FYB1O15117 783 aa14.87□□□□□ -0.03
RFFL-209ENST00000581265 TMF1P82094 1093 aa14.87□□□□□ -0.03
RFFL-209ENST00000581265 LRRC4BQ9NT99 713 aa14.87□□□□□ -0.03
RFFL-209ENST00000581265 GRIN3BO60391 1043 aa14.86□□□□□ -0.03
RFFL-209ENST00000581265 TRIM26Q12899 539 aaPredicted RBP14.86□□□□□ -0.03
RFFL-209ENST00000581265 SLC27A3Q5K4L6 730 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms