RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 RGPD5Q99666 1765 aa20.72■□□□□ 0.91
SS18-212ENST00000579061 OVOS2A0A0J9YW53 1432 aa20.71■□□□□ 0.91
SS18-212ENST00000579061 CRB1P82279 1406 aa20.71■□□□□ 0.91
SS18-212ENST00000579061 OVOS2Q6IE36 1432 aa20.71■□□□□ 0.91
SS18-212ENST00000579061 TCP11L2Q8N4U5 519 aa20.71■□□□□ 0.91
SS18-212ENST00000579061 EIF4G2P78344 907 aaKnown RBP eCLIP20.7■□□□□ 0.9
SS18-212ENST00000579061 BLMP54132 1417 aaPredicted RBP20.7■□□□□ 0.9
SS18-212ENST00000579061 SOX12O15370 315 aa20.69■□□□□ 0.9
SS18-212ENST00000579061 AXIN2Q9Y2T1 843 aa20.69■□□□□ 0.9
SS18-212ENST00000579061 LTN1O94822 1766 aa20.69■□□□□ 0.9
SS18-212ENST00000579061 MYOM1P52179 1685 aa20.68■□□□□ 0.9
SS18-212ENST00000579061 USP35Q9P2H5 1018 aa20.68■□□□□ 0.9
SS18-212ENST00000579061 WDR17Q8IZU2 1322 aa20.68■□□□□ 0.9
SS18-212ENST00000579061 PARP4Q9UKK3 1724 aaKnown RBP20.66■□□□□ 0.9
SS18-212ENST00000579061 TOM1L2Q6ZVM7 507 aa20.65■□□□□ 0.9
SS18-212ENST00000579061 COG3Q96JB2 828 aa20.65■□□□□ 0.9
SS18-212ENST00000579061 HSPA5P11021 654 aaKnown RBP20.64■□□□□ 0.89
SS18-212ENST00000579061 WNK3Q9BYP7 1800 aa20.63■□□□□ 0.89
SS18-212ENST00000579061 KIF20BQ96Q89 1820 aa20.62■□□□□ 0.89
SS18-212ENST00000579061 SF3B2Q13435 895 aaKnown RBP20.62■□□□□ 0.89
SS18-212ENST00000579061 CARD10Q9BWT7 1032 aa20.62■□□□□ 0.89
SS18-212ENST00000579061 FYB1O15117 783 aa20.61■□□□□ 0.89
SS18-212ENST00000579061 PDE3BQ13370 1112 aa20.61■□□□□ 0.89
SS18-212ENST00000579061 CDCA7Q9BWT1 371 aaPredicted RBP20.61■□□□□ 0.89
SS18-212ENST00000579061 RGPD1P0DJD0 1748 aa20.61■□□□□ 0.89
SS18-212ENST00000579061 CSB-PGBD3P0DP91 1061 aa20.6■□□□□ 0.89
SS18-212ENST00000579061 FAM196AQ6ZSG2 479 aa20.6■□□□□ 0.89
SS18-212ENST00000579061 CCDC7Q96M83 1385 aa20.59■□□□□ 0.89
SS18-212ENST00000579061 ERBB3P21860 1342 aa20.59■□□□□ 0.89
SS18-212ENST00000579061 C11orf95C9JLR9 678 aaPredicted RBP20.58■□□□□ 0.89
SS18-212ENST00000579061 IP6K1Q92551 441 aa20.58■□□□□ 0.89
SS18-212ENST00000579061 FAM182BQ5T319 152 aa20.57■□□□□ 0.88
SS18-212ENST00000579061 CARD14Q9BXL6 1004 aa20.57■□□□□ 0.88
SS18-212ENST00000579061 GGNBP2Q9H3C7 697 aa20.57■□□□□ 0.88
SS18-212ENST00000579061 LRRC37A3O60309 1634 aa20.56■□□□□ 0.88
SS18-212ENST00000579061 NSD3Q9BZ95 1437 aa20.56■□□□□ 0.88
SS18-212ENST00000579061 FAM208AQ9UK61 1670 aaKnown RBP20.56■□□□□ 0.88
SS18-212ENST00000579061 DISP2A7MBM2 1401 aa20.55■□□□□ 0.88
SS18-212ENST00000579061 BAG6P46379 1132 aa20.55■□□□□ 0.88
SS18-212ENST00000579061 DDB1Q16531 1140 aa20.55■□□□□ 0.88
SS18-212ENST00000579061 ANKRD24Q8TF21 1146 aa20.55■□□□□ 0.88
SS18-212ENST00000579061 TNS1Q9HBL0 1735 aaKnown RBP20.55■□□□□ 0.88
SS18-212ENST00000579061 MAP3K19Q56UN5 1328 aa20.54■□□□□ 0.88
SS18-212ENST00000579061 RTL1A6NKG5 1358 aa20.54■□□□□ 0.88
SS18-212ENST00000579061 DEFB132Q7Z7B7 95 aa20.53■□□□□ 0.88
SS18-212ENST00000579061 HOXC9P31274 260 aa20.52■□□□□ 0.88
SS18-212ENST00000579061 AMPHP49418 695 aa20.52■□□□□ 0.88
SS18-212ENST00000579061 POLR3GLQ9BT43 218 aa20.52■□□□□ 0.88
SS18-212ENST00000579061 NLRP2Q9NX02 1062 aa20.52■□□□□ 0.88
SS18-212ENST00000579061 PEAK1Q9H792 1746 aa20.52■□□□□ 0.88
SS18-212ENST00000579061 CGNL1Q0VF96 1302 aa20.52■□□□□ 0.87
SS18-212ENST00000579061 OVOS2A0A0G2JMS6 1433 aa20.51■□□□□ 0.87
SS18-212ENST00000579061 KIF24Q5T7B8 1368 aa20.5■□□□□ 0.87
SS18-212ENST00000579061 FBLN1P23142 703 aa20.5■□□□□ 0.87
SS18-212ENST00000579061 SBF2Q86WG5 1849 aa20.5■□□□□ 0.87
SS18-212ENST00000579061 EXOC5O00471 708 aa20.49■□□□□ 0.87
SS18-212ENST00000579061 TRIM37O94972 964 aa20.49■□□□□ 0.87
SS18-212ENST00000579061 BCL9O00512 1426 aa20.49■□□□□ 0.87
SS18-212ENST00000579061 ANKRD26Q9UPS8 1709 aa20.48■□□□□ 0.87
SS18-212ENST00000579061 RRS1Q15050 365 aaKnown RBP20.48■□□□□ 0.87
SS18-212ENST00000579061 TNS2Q63HR2 1409 aa20.47■□□□□ 0.87
SS18-212ENST00000579061 IL2RBP14784 551 aa20.47■□□□□ 0.87
SS18-212ENST00000579061 MARCH10Q8NA82 808 aaPredicted RBP20.46■□□□□ 0.87
SS18-212ENST00000579061 PANK3Q9H999 370 aa20.46■□□□□ 0.87
SS18-212ENST00000579061 RGPD2P0DJD1 1756 aa20.45■□□□□ 0.86
SS18-212ENST00000579061 EN1Q05925 392 aaPredicted RBP20.45■□□□□ 0.86
SS18-212ENST00000579061 LTV1Q96GA3 475 aaPredicted RBP20.45■□□□□ 0.86
SS18-212ENST00000579061 MAP2P11137 1827 aaKnown RBP20.45■□□□□ 0.86
SS18-212ENST00000579061 INSRP06213 1382 aa20.45■□□□□ 0.86
SS18-212ENST00000579061 FLT4P35916 1363 aa20.45■□□□□ 0.86
SS18-212ENST00000579061 PARD3Q8TEW0 1356 aa20.45■□□□□ 0.86
SS18-212ENST00000579061 APBA3O96018 575 aa20.43■□□□□ 0.86
SS18-212ENST00000579061 SMG6Q86US8 1419 aaKnown RBP20.43■□□□□ 0.86
SS18-212ENST00000579061 CAMKK2Q96RR4 588 aa20.42■□□□□ 0.86
SS18-212ENST00000579061 KIF7Q2M1P5 1343 aa20.42■□□□□ 0.86
SS18-212ENST00000579061 NSD2O96028 1365 aa20.42■□□□□ 0.86
SS18-212ENST00000579061 RGPD3A6NKT7 1758 aaPredicted RBP20.4■□□□□ 0.86
SS18-212ENST00000579061 RGPD4Q7Z3J3 1758 aa20.4■□□□□ 0.86
SS18-212ENST00000579061 BCL11BQ9C0K0 894 aaPredicted RBP20.4■□□□□ 0.86
SS18-212ENST00000579061 RREB1Q92766 1687 aa20.39■□□□□ 0.86
SS18-212ENST00000579061 EZH2Q15910 746 aaKnown RBP20.39■□□□□ 0.85
SS18-212ENST00000579061 HSP90AB2PQ58FF8 381 aa20.39■□□□□ 0.85
SS18-212ENST00000579061 EMILIN1Q9Y6C2 1016 aa20.39■□□□□ 0.85
SS18-212ENST00000579061 NBPF6Q5VWK0 638 aa20.38■□□□□ 0.85
SS18-212ENST00000579061 NBPF4Q96M43 638 aa20.38■□□□□ 0.85
SS18-212ENST00000579061 WASHC2AQ641Q2 1341 aa20.37■□□□□ 0.85
SS18-212ENST00000579061 PLSCR1O15162 318 aa20.36■□□□□ 0.85
SS18-212ENST00000579061 POLKQ9UBT6 870 aa20.36■□□□□ 0.85
SS18-212ENST00000579061 KNSTRNQ9Y448 316 aa20.36■□□□□ 0.85
SS18-212ENST00000579061 KAT6BQ8WYB5 2073 aa20.36■□□□□ 0.85
SS18-212ENST00000579061 NHSQ6T4R5 1651 aa20.35■□□□□ 0.85
SS18-212ENST00000579061 NUP188Q5SRE5 1749 aa20.33■□□□□ 0.85
SS18-212ENST00000579061 MEGF6O75095 1541 aa20.33■□□□□ 0.85
SS18-212ENST00000579061 PPM1GO15355 546 aaPredicted RBP20.33■□□□□ 0.85
SS18-212ENST00000579061 SHANK3Q9BYB0 1731 aa20.33■□□□□ 0.84
SS18-212ENST00000579061 ZCRB1Q8TBF4 217 aaKnown RBP20.32■□□□□ 0.84
SS18-212ENST00000579061 RAPGEF4Q8WZA2 1011 aa20.32■□□□□ 0.84
SS18-212ENST00000579061 NCAPD2Q15021 1401 aa20.32■□□□□ 0.84
SS18-212ENST00000579061 TATP17735 454 aaPredicted RBP20.3■□□□□ 0.84
SS18-212ENST00000579061 TNNT2P45379 298 aaPredicted RBP20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms