RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 FNBP4Q8N3X1 1017 aaPredicted RBP11.63□□□□□ -0.55
NUP88-211ENST00000575976 BTG4Q9NY30 223 aa11.63□□□□□ -0.55
NUP88-211ENST00000575976 AXIN2Q9Y2T1 843 aa11.63□□□□□ -0.55
NUP88-211ENST00000575976 EMILIN1Q9Y6C2 1016 aa11.63□□□□□ -0.55
NUP88-211ENST00000575976 HOXC9P31274 260 aa11.62□□□□□ -0.55
NUP88-211ENST00000575976 AMPHP49418 695 aa11.62□□□□□ -0.55
NUP88-211ENST00000575976 IP6K1Q92551 441 aa11.62□□□□□ -0.55
NUP88-211ENST00000575976 SLIT2O94813 1529 aa11.61□□□□□ -0.55
NUP88-211ENST00000575976 PPM1GO15355 546 aaPredicted RBP11.61□□□□□ -0.55
NUP88-211ENST00000575976 USP21Q9UK80 565 aa11.61□□□□□ -0.55
NUP88-211ENST00000575976 PARD3Q8TEW0 1356 aa11.61□□□□□ -0.55
NUP88-211ENST00000575976 CAMTA1Q9Y6Y1 1673 aa11.61□□□□□ -0.55
NUP88-211ENST00000575976 COL14A1Q05707 1796 aaKnown RBP11.61□□□□□ -0.55
NUP88-211ENST00000575976 COL18A1P39060 1754 aa11.6□□□□□ -0.55
NUP88-211ENST00000575976 PPP2R1AP30153 589 aa11.6□□□□□ -0.55
NUP88-211ENST00000575976 MTHFSP49914 203 aa11.6□□□□□ -0.55
NUP88-211ENST00000575976 RALBP1Q15311 655 aa11.6□□□□□ -0.55
NUP88-211ENST00000575976 HSP90AB2PQ58FF8 381 aa11.6□□□□□ -0.55
NUP88-211ENST00000575976 PRKRIP1Q9H875 184 aaPredicted RBP11.6□□□□□ -0.55
NUP88-211ENST00000575976 STRN4Q9NRL3 753 aa11.6□□□□□ -0.55
NUP88-211ENST00000575976 LMO7Q8WWI1 1683 aa11.59□□□□□ -0.55
NUP88-211ENST00000575976 BCL9LQ86UU0 1499 aa11.59□□□□□ -0.55
NUP88-211ENST00000575976 KIF24Q5T7B8 1368 aa11.59□□□□□ -0.55
NUP88-211ENST00000575976 EVA1CP58658 441 aa11.59□□□□□ -0.55
NUP88-211ENST00000575976 UNC5CLQ8IV45 518 aa11.59□□□□□ -0.55
NUP88-211ENST00000575976 LTN1O94822 1766 aa11.59□□□□□ -0.55
NUP88-211ENST00000575976 MAP2P11137 1827 aaKnown RBP11.58□□□□□ -0.56
NUP88-211ENST00000575976 PEAK1Q9H792 1746 aa11.58□□□□□ -0.56
NUP88-211ENST00000575976 RTL1A6NKG5 1358 aa11.58□□□□□ -0.56
NUP88-211ENST00000575976 FLT4P35916 1363 aa11.58□□□□□ -0.56
NUP88-211ENST00000575976 LTV1Q96GA3 475 aaPredicted RBP11.58□□□□□ -0.56
NUP88-211ENST00000575976 TRPC5Q9UL62 973 aaPredicted RBP11.58□□□□□ -0.56
NUP88-211ENST00000575976 SMG6Q86US8 1419 aaKnown RBP11.58□□□□□ -0.56
NUP88-211ENST00000575976 PLCH1Q4KWH8 1693 aa11.58□□□□□ -0.56
NUP88-211ENST00000575976 COL5A2P05997 1499 aaPredicted RBP11.57□□□□□ -0.56
NUP88-211ENST00000575976 INSRP06213 1382 aa11.57□□□□□ -0.56
NUP88-211ENST00000575976 ANP32CO43423 234 aa11.57□□□□□ -0.56
NUP88-211ENST00000575976 CSB-PGBD3P0DP91 1061 aa11.57□□□□□ -0.56
NUP88-211ENST00000575976 LARP1Q6PKG0 1096 aaKnown RBP11.57□□□□□ -0.56
NUP88-211ENST00000575976 ANKRD24Q8TF21 1146 aa11.57□□□□□ -0.56
NUP88-211ENST00000575976 BLMP54132 1417 aaPredicted RBP11.57□□□□□ -0.56
NUP88-211ENST00000575976 ABCC6O95255 1503 aa11.56□□□□□ -0.56
NUP88-211ENST00000575976 VPS72Q15906 364 aa11.56□□□□□ -0.56
NUP88-211ENST00000575976 NWD2Q9ULI1 1742 aa11.56□□□□□ -0.56
NUP88-211ENST00000575976 RGPD5Q99666 1765 aa11.56□□□□□ -0.56
NUP88-211ENST00000575976 ERBB3P21860 1342 aa11.56□□□□□ -0.56
NUP88-211ENST00000575976 WDR17Q8IZU2 1322 aa11.56□□□□□ -0.56
NUP88-211ENST00000575976 MYBBP1AQ9BQG0 1328 aaKnown RBP11.56□□□□□ -0.56
NUP88-211ENST00000575976 NRAPQ86VF7 1730 aa11.55□□□□□ -0.56
NUP88-211ENST00000575976 ATRNO75882 1429 aa11.55□□□□□ -0.56
NUP88-211ENST00000575976 EIF4A2Q14240 407 aaKnown RBP11.55□□□□□ -0.56
NUP88-211ENST00000575976 DIEXFQ68CQ4 756 aaKnown RBP11.55□□□□□ -0.56
NUP88-211ENST00000575976 TOM1L2Q6ZVM7 507 aa11.55□□□□□ -0.56
NUP88-211ENST00000575976 CCDC9Q9Y3X0 531 aaKnown RBP11.55□□□□□ -0.56
NUP88-211ENST00000575976 GJD4Q96KN9 370 aaPredicted RBP11.54□□□□□ -0.56
NUP88-211ENST00000575976 SPATA31A5Q5VU36 1347 aa11.54□□□□□ -0.56
NUP88-211ENST00000575976 SPATA31A7Q8IWB4 1347 aa11.54□□□□□ -0.56
NUP88-211ENST00000575976 IL13P35225 146 aa11.53□□□□□ -0.56
NUP88-211ENST00000575976 NBPF6Q5VWK0 638 aa11.53□□□□□ -0.56
NUP88-211ENST00000575976 NBPF4Q96M43 638 aa11.53□□□□□ -0.56
NUP88-211ENST00000575976 CFAP53Q96M91 514 aa11.53□□□□□ -0.56
NUP88-211ENST00000575976 CARD10Q9BWT7 1032 aa11.53□□□□□ -0.56
NUP88-211ENST00000575976 NLRP2Q9NX02 1062 aa11.53□□□□□ -0.56
NUP88-211ENST00000575976 USP35Q9P2H5 1018 aa11.53□□□□□ -0.56
NUP88-211ENST00000575976 SPATA31A1Q5TZJ5 1347 aa11.53□□□□□ -0.56
NUP88-211ENST00000575976 CRB1P82279 1406 aa11.52□□□□□ -0.56
NUP88-211ENST00000575976 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.52□□□□□ -0.56
NUP88-211ENST00000575976 DIAPH1O60610 1272 aaKnown RBP11.52□□□□□ -0.57
NUP88-211ENST00000575976 EYA1Q99502 592 aa11.52□□□□□ -0.57
NUP88-211ENST00000575976 COL3A1P02461 1466 aaPredicted RBP11.51□□□□□ -0.57
NUP88-211ENST00000575976 TCP11L2Q8N4U5 519 aa11.51□□□□□ -0.57
NUP88-211ENST00000575976 USHBP1Q8N6Y0 703 aa11.51□□□□□ -0.57
NUP88-211ENST00000575976 SF3B2Q13435 895 aaKnown RBP11.5□□□□□ -0.57
NUP88-211ENST00000575976 CCDC184Q52MB2 194 aa11.5□□□□□ -0.57
NUP88-211ENST00000575976 GLI3P10071 1580 aa11.5□□□□□ -0.57
NUP88-211ENST00000575976 U2SURPO15042 1029 aaKnown RBP11.49□□□□□ -0.57
NUP88-211ENST00000575976 FAM98CQ17RN3 349 aaKnown RBP11.49□□□□□ -0.57
NUP88-211ENST00000575976 BARGINQ6ZT62 677 aa11.49□□□□□ -0.57
NUP88-211ENST00000575976 THRAP3Q9Y2W1 955 aaKnown RBP11.49□□□□□ -0.57
NUP88-211ENST00000575976 IGSF1Q8N6C5 1336 aa11.49□□□□□ -0.57
NUP88-211ENST00000575976 EP400Q96L91 3159 aa11.49□□□□□ -0.57
NUP88-211ENST00000575976 ONECUT3O60422 494 aaPredicted RBP11.48□□□□□ -0.57
NUP88-211ENST00000575976 NUDCQ9Y266 331 aa11.48□□□□□ -0.57
NUP88-211ENST00000575976 LRP5O75197 1615 aa11.48□□□□□ -0.57
NUP88-211ENST00000575976 RGPD2P0DJD1 1756 aa11.48□□□□□ -0.57
NUP88-211ENST00000575976 FAM208AQ9UK61 1670 aaKnown RBP11.47□□□□□ -0.57
NUP88-211ENST00000575976 HMOX1P09601 288 aa11.47□□□□□ -0.57
NUP88-211ENST00000575976 SULT6B1Q6IMI4 303 aa11.47□□□□□ -0.57
NUP88-211ENST00000575976 AEBP1Q8IUX7 1158 aa11.47□□□□□ -0.57
NUP88-211ENST00000575976 NCAPD2Q15021 1401 aa11.46□□□□□ -0.57
NUP88-211ENST00000575976 A0A0G2JS52 829 aa11.46□□□□□ -0.57
NUP88-211ENST00000575976 U2AF1L5P0DN76 240 aaPredicted RBP11.46□□□□□ -0.57
NUP88-211ENST00000575976 IL2RBP14784 551 aa11.46□□□□□ -0.57
NUP88-211ENST00000575976 U2AF1Q01081 240 aaKnown RBP eCLIP11.46□□□□□ -0.57
NUP88-211ENST00000575976 MYT1Q01538 1121 aa11.46□□□□□ -0.57
NUP88-211ENST00000575976 MIER1Q8N108 512 aa11.46□□□□□ -0.57
NUP88-211ENST00000575976 DISP2A7MBM2 1401 aa11.45□□□□□ -0.58
NUP88-211ENST00000575976 SEPT12Q8IYM1 358 aa11.45□□□□□ -0.58
NUP88-211ENST00000575976 RAPGEF4Q8WZA2 1011 aa11.45□□□□□ -0.58
NUP88-211ENST00000575976 MRS2Q9HD23 443 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms