RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 HDGFL2Q7Z4V5 671 aaPredicted RBP24.58■■□□□ 1.53
SMG6-214ENST00000573827 OVOS2A0A0J9YW53 1432 aa24.58■■□□□ 1.53
SMG6-214ENST00000573827 OVOS2Q6IE36 1432 aa24.58■■□□□ 1.53
SMG6-214ENST00000573827 PARP4Q9UKK3 1724 aaKnown RBP24.58■■□□□ 1.52
SMG6-214ENST00000573827 ZBTB7CA1YPR0 619 aa24.57■■□□□ 1.52
SMG6-214ENST00000573827 TERF2IPQ9NYB0 399 aa24.57■■□□□ 1.52
SMG6-214ENST00000573827 WDR17Q8IZU2 1322 aa24.57■■□□□ 1.52
SMG6-214ENST00000573827 TNS1Q9HBL0 1735 aaKnown RBP24.56■■□□□ 1.52
SMG6-214ENST00000573827 DISP2A7MBM2 1401 aa24.56■■□□□ 1.52
SMG6-214ENST00000573827 SOX12O15370 315 aa24.56■■□□□ 1.52
SMG6-214ENST00000573827 SLC24A1O60721 1099 aa24.56■■□□□ 1.52
SMG6-214ENST00000573827 RGPD5Q99666 1765 aa24.56■■□□□ 1.52
SMG6-214ENST00000573827 RGPD1P0DJD0 1748 aa24.55■■□□□ 1.52
SMG6-214ENST00000573827 FAM196AQ6ZSG2 479 aa24.53■■□□□ 1.52
SMG6-214ENST00000573827 SF3B2Q13435 895 aaKnown RBP24.52■■□□□ 1.52
SMG6-214ENST00000573827 PEAK1Q9H792 1746 aa24.51■■□□□ 1.51
SMG6-214ENST00000573827 ANKRD36BQ8N2N9 1353 aa24.51■■□□□ 1.51
SMG6-214ENST00000573827 LRRC37A3O60309 1634 aa24.5■■□□□ 1.51
SMG6-214ENST00000573827 WNK3Q9BYP7 1800 aa24.5■■□□□ 1.51
SMG6-214ENST00000573827 TOM1L2Q6ZVM7 507 aa24.5■■□□□ 1.51
SMG6-214ENST00000573827 BAG6P46379 1132 aa24.49■■□□□ 1.51
SMG6-214ENST00000573827 TMF1P82094 1093 aa24.49■■□□□ 1.51
SMG6-214ENST00000573827 PDE3BQ13370 1112 aa24.49■■□□□ 1.51
SMG6-214ENST00000573827 CARD10Q9BWT7 1032 aa24.49■■□□□ 1.51
SMG6-214ENST00000573827 EN1Q05925 392 aaPredicted RBP24.48■■□□□ 1.51
SMG6-214ENST00000573827 TRIM37O94972 964 aa24.47■■□□□ 1.51
SMG6-214ENST00000573827 LTN1O94822 1766 aa24.47■■□□□ 1.51
SMG6-214ENST00000573827 ERBB3P21860 1342 aa24.46■■□□□ 1.51
SMG6-214ENST00000573827 CAMKK2Q96RR4 588 aa24.45■■□□□ 1.5
SMG6-214ENST00000573827 CDCA7Q9BWT1 371 aaPredicted RBP24.42■■□□□ 1.5
SMG6-214ENST00000573827 MYOM1P52179 1685 aa24.42■■□□□ 1.5
SMG6-214ENST00000573827 CCDC7Q96M83 1385 aa24.42■■□□□ 1.5
SMG6-214ENST00000573827 DDB1Q16531 1140 aa24.41■■□□□ 1.5
SMG6-214ENST00000573827 OVOS2A0A0G2JMS6 1433 aa24.41■■□□□ 1.5
SMG6-214ENST00000573827 BCL9O00512 1426 aa24.41■■□□□ 1.5
SMG6-214ENST00000573827 FYB1O15117 783 aa24.4■■□□□ 1.5
SMG6-214ENST00000573827 CSB-PGBD3P0DP91 1061 aa24.4■■□□□ 1.5
SMG6-214ENST00000573827 EZH2Q15910 746 aaKnown RBP24.4■■□□□ 1.5
SMG6-214ENST00000573827 MARCH10Q8NA82 808 aaPredicted RBP24.4■■□□□ 1.5
SMG6-214ENST00000573827 FBLN1P23142 703 aa24.39■■□□□ 1.49
SMG6-214ENST00000573827 CDCA8Q53HL2 280 aa24.39■■□□□ 1.49
SMG6-214ENST00000573827 IP6K1Q92551 441 aa24.39■■□□□ 1.49
SMG6-214ENST00000573827 CARD14Q9BXL6 1004 aa24.38■■□□□ 1.49
SMG6-214ENST00000573827 PARD3Q8TEW0 1356 aa24.38■■□□□ 1.49
SMG6-214ENST00000573827 SBF2Q86WG5 1849 aa24.38■■□□□ 1.49
SMG6-214ENST00000573827 MAP3K19Q56UN5 1328 aa24.37■■□□□ 1.49
SMG6-214ENST00000573827 APBA3O96018 575 aa24.37■■□□□ 1.49
SMG6-214ENST00000573827 CCER1Q8TC90 406 aaPredicted RBP24.37■■□□□ 1.49
SMG6-214ENST00000573827 ANKRD24Q8TF21 1146 aa24.37■■□□□ 1.49
SMG6-214ENST00000573827 COG3Q96JB2 828 aa24.37■■□□□ 1.49
SMG6-214ENST00000573827 C11orf95C9JLR9 678 aaPredicted RBP24.36■■□□□ 1.49
SMG6-214ENST00000573827 PTF1AQ7RTS3 328 aa24.36■■□□□ 1.49
SMG6-214ENST00000573827 RREB1Q92766 1687 aa24.36■■□□□ 1.49
SMG6-214ENST00000573827 TNS2Q63HR2 1409 aa24.35■■□□□ 1.49
SMG6-214ENST00000573827 GGNBP2Q9H3C7 697 aa24.34■■□□□ 1.49
SMG6-214ENST00000573827 NLRP2Q9NX02 1062 aa24.33■■□□□ 1.49
SMG6-214ENST00000573827 PSDA5PKW4 1024 aaPredicted RBP24.32■■□□□ 1.48
SMG6-214ENST00000573827 HOXC9P31274 260 aa24.32■■□□□ 1.48
SMG6-214ENST00000573827 NUP188Q5SRE5 1749 aa24.31■■□□□ 1.48
SMG6-214ENST00000573827 EXOC5O00471 708 aa24.3■■□□□ 1.48
SMG6-214ENST00000573827 RTL1A6NKG5 1358 aa24.29■■□□□ 1.48
SMG6-214ENST00000573827 NSD3Q9BZ95 1437 aa24.29■■□□□ 1.48
SMG6-214ENST00000573827 KIF20BQ96Q89 1820 aa24.29■■□□□ 1.48
SMG6-214ENST00000573827 BCL11BQ9C0K0 894 aaPredicted RBP24.29■■□□□ 1.48
SMG6-214ENST00000573827 RGPD3A6NKT7 1758 aaPredicted RBP24.29■■□□□ 1.48
SMG6-214ENST00000573827 RGPD4Q7Z3J3 1758 aa24.29■■□□□ 1.48
SMG6-214ENST00000573827 FAM208AQ9UK61 1670 aaKnown RBP24.28■■□□□ 1.48
SMG6-214ENST00000573827 HSPA5P11021 654 aaKnown RBP24.28■■□□□ 1.48
SMG6-214ENST00000573827 IL2RBP14784 551 aa24.28■■□□□ 1.48
SMG6-214ENST00000573827 RRS1Q15050 365 aaKnown RBP24.28■■□□□ 1.48
SMG6-214ENST00000573827 LRP5O75197 1615 aa24.27■■□□□ 1.48
SMG6-214ENST00000573827 PLSCR1O15162 318 aa24.26■■□□□ 1.47
SMG6-214ENST00000573827 R3HDM1Q15032 1099 aaKnown RBP24.26■■□□□ 1.47
SMG6-214ENST00000573827 EIF4G2P78344 907 aaKnown RBP eCLIP24.25■■□□□ 1.47
SMG6-214ENST00000573827 LTV1Q96GA3 475 aaPredicted RBP24.25■■□□□ 1.47
SMG6-214ENST00000573827 AMPHP49418 695 aa24.24■■□□□ 1.47
SMG6-214ENST00000573827 PROM2Q8N271 834 aa24.24■■□□□ 1.47
SMG6-214ENST00000573827 RGPD2P0DJD1 1756 aa24.23■■□□□ 1.47
SMG6-214ENST00000573827 KIF24Q5T7B8 1368 aa24.21■■□□□ 1.47
SMG6-214ENST00000573827 KCNQ2O43526 872 aa24.21■■□□□ 1.47
SMG6-214ENST00000573827 NHSQ6T4R5 1651 aa24.21■■□□□ 1.47
SMG6-214ENST00000573827 INSRP06213 1382 aa24.2■■□□□ 1.46
SMG6-214ENST00000573827 NBPF6Q5VWK0 638 aa24.2■■□□□ 1.46
SMG6-214ENST00000573827 NBPF4Q96M43 638 aa24.2■■□□□ 1.46
SMG6-214ENST00000573827 MEGF6O75095 1541 aa24.2■■□□□ 1.46
SMG6-214ENST00000573827 HSP90AB2PQ58FF8 381 aa24.19■■□□□ 1.46
SMG6-214ENST00000573827 ANKRD26Q9UPS8 1709 aa24.18■■□□□ 1.46
SMG6-214ENST00000573827 FLT4P35916 1363 aa24.17■■□□□ 1.46
SMG6-214ENST00000573827 EMILIN1Q9Y6C2 1016 aa24.17■■□□□ 1.46
SMG6-214ENST00000573827 SHANK3Q9BYB0 1731 aa24.17■■□□□ 1.46
SMG6-214ENST00000573827 ANO8Q9HCE9 1232 aaPredicted RBP24.16■■□□□ 1.46
SMG6-214ENST00000573827 CGNL1Q0VF96 1302 aa24.15■■□□□ 1.46
SMG6-214ENST00000573827 ACSBG1Q96GR2 724 aa24.14■■□□□ 1.45
SMG6-214ENST00000573827 NCAPD2Q15021 1401 aa24.13■■□□□ 1.45
SMG6-214ENST00000573827 NBPF14Q5TI25 921 aa24.12■■□□□ 1.45
SMG6-214ENST00000573827 USHBP1Q8N6Y0 703 aa24.12■■□□□ 1.45
SMG6-214ENST00000573827 TXNRD1Q16881 649 aa24.11■■□□□ 1.45
SMG6-214ENST00000573827 POLR3GLQ9BT43 218 aa24.11■■□□□ 1.45
SMG6-214ENST00000573827 PANK3Q9H999 370 aa24.11■■□□□ 1.45
SMG6-214ENST00000573827 BTAF1O14981 1849 aa24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms