RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 OVOS2Q6IE36 1432 aa28.03■■■□□ 2.08
NUP88-204ENST00000572290 THRAP3Q9Y2W1 955 aaKnown RBP28.03■■■□□ 2.08
NUP88-204ENST00000572290 CRB1P82279 1406 aa28.01■■■□□ 2.08
NUP88-204ENST00000572290 TOM1L2Q6ZVM7 507 aa28.01■■■□□ 2.07
NUP88-204ENST00000572290 COG3Q96JB2 828 aa28.01■■■□□ 2.07
NUP88-204ENST00000572290 WDR17Q8IZU2 1322 aa28■■■□□ 2.07
NUP88-204ENST00000572290 USP54Q70EL1 1684 aa28■■■□□ 2.07
NUP88-204ENST00000572290 THSD7AQ9UPZ6 1657 aa27.99■■■□□ 2.07
NUP88-204ENST00000572290 CSB-PGBD3P0DP91 1061 aa27.98■■■□□ 2.07
NUP88-204ENST00000572290 POLR3GLQ9BT43 218 aa27.98■■■□□ 2.07
NUP88-204ENST00000572290 COL18A1P39060 1754 aa27.97■■■□□ 2.07
NUP88-204ENST00000572290 BLMP54132 1417 aaPredicted RBP27.97■■■□□ 2.07
NUP88-204ENST00000572290 BRWD3Q6RI45 1802 aa27.97■■■□□ 2.07
NUP88-204ENST00000572290 FYB1O15117 783 aa27.95■■■□□ 2.06
NUP88-204ENST00000572290 ABCC6O95255 1503 aa27.95■■■□□ 2.06
NUP88-204ENST00000572290 FAM182BQ5T319 152 aa27.94■■■□□ 2.06
NUP88-204ENST00000572290 GGNBP2Q9H3C7 697 aa27.94■■■□□ 2.06
NUP88-204ENST00000572290 PDE3BQ13370 1112 aa27.93■■■□□ 2.06
NUP88-204ENST00000572290 SF3B2Q13435 895 aaKnown RBP27.93■■■□□ 2.06
NUP88-204ENST00000572290 CARD14Q9BXL6 1004 aa27.93■■■□□ 2.06
NUP88-204ENST00000572290 CARD10Q9BWT7 1032 aa27.92■■■□□ 2.06
NUP88-204ENST00000572290 EP400Q96L91 3159 aa27.9■■■□□ 2.06
NUP88-204ENST00000572290 NSD3Q9BZ95 1437 aa27.9■■■□□ 2.06
NUP88-204ENST00000572290 ERBB3P21860 1342 aa27.89■■■□□ 2.05
NUP88-204ENST00000572290 IP6K1Q92551 441 aa27.88■■■□□ 2.05
NUP88-204ENST00000572290 FAM196AQ6ZSG2 479 aa27.87■■■□□ 2.05
NUP88-204ENST00000572290 ANKRD24Q8TF21 1146 aa27.87■■■□□ 2.05
NUP88-204ENST00000572290 MYOM1P52179 1685 aa27.87■■■□□ 2.05
NUP88-204ENST00000572290 MAP3K19Q56UN5 1328 aa27.87■■■□□ 2.05
NUP88-204ENST00000572290 FBLN1P23142 703 aa27.86■■■□□ 2.05
NUP88-204ENST00000572290 CDCA7Q9BWT1 371 aaPredicted RBP27.86■■■□□ 2.05
NUP88-204ENST00000572290 CCDC7Q96M83 1385 aa27.86■■■□□ 2.05
NUP88-204ENST00000572290 DEFB132Q7Z7B7 95 aa27.85■■■□□ 2.05
NUP88-204ENST00000572290 NLRP2Q9NX02 1062 aa27.85■■■□□ 2.05
NUP88-204ENST00000572290 AMPHP49418 695 aa27.84■■■□□ 2.05
NUP88-204ENST00000572290 DDB1Q16531 1140 aa27.84■■■□□ 2.05
NUP88-204ENST00000572290 C11orf95C9JLR9 678 aaPredicted RBP27.82■■■□□ 2.04
NUP88-204ENST00000572290 HOXC9P31274 260 aa27.82■■■□□ 2.04
NUP88-204ENST00000572290 BAG6P46379 1132 aa27.81■■■□□ 2.04
NUP88-204ENST00000572290 RRS1Q15050 365 aaKnown RBP27.81■■■□□ 2.04
NUP88-204ENST00000572290 CGNL1Q0VF96 1302 aa27.81■■■□□ 2.04
NUP88-204ENST00000572290 LTV1Q96GA3 475 aaPredicted RBP27.8■■■□□ 2.04
NUP88-204ENST00000572290 DISP2A7MBM2 1401 aa27.79■■■□□ 2.04
NUP88-204ENST00000572290 PANK3Q9H999 370 aa27.79■■■□□ 2.04
NUP88-204ENST00000572290 LTN1O94822 1766 aa27.78■■■□□ 2.04
NUP88-204ENST00000572290 PARP4Q9UKK3 1724 aaKnown RBP27.78■■■□□ 2.04
NUP88-204ENST00000572290 RTL1A6NKG5 1358 aa27.78■■■□□ 2.04
NUP88-204ENST00000572290 TRIM37O94972 964 aa27.78■■■□□ 2.04
NUP88-204ENST00000572290 RGPD5Q99666 1765 aa27.78■■■□□ 2.04
NUP88-204ENST00000572290 EXOC5O00471 708 aa27.76■■■□□ 2.03
NUP88-204ENST00000572290 OVOS2A0A0G2JMS6 1433 aa27.74■■■□□ 2.03
NUP88-204ENST00000572290 IL2RBP14784 551 aa27.73■■■□□ 2.03
NUP88-204ENST00000572290 LRRC37A3O60309 1634 aa27.73■■■□□ 2.03
NUP88-204ENST00000572290 KIF7Q2M1P5 1343 aa27.72■■■□□ 2.03
NUP88-204ENST00000572290 EN1Q05925 392 aaPredicted RBP27.72■■■□□ 2.03
NUP88-204ENST00000572290 MARCH10Q8NA82 808 aaPredicted RBP27.72■■■□□ 2.03
NUP88-204ENST00000572290 KIF20BQ96Q89 1820 aa27.71■■■□□ 2.03
NUP88-204ENST00000572290 KIF24Q5T7B8 1368 aa27.71■■■□□ 2.03
NUP88-204ENST00000572290 APBA3O96018 575 aa27.7■■■□□ 2.02
NUP88-204ENST00000572290 FLT4P35916 1363 aa27.7■■■□□ 2.02
NUP88-204ENST00000572290 RGPD1P0DJD0 1748 aa27.69■■■□□ 2.02
NUP88-204ENST00000572290 TNS2Q63HR2 1409 aa27.68■■■□□ 2.02
NUP88-204ENST00000572290 HSP90AB2PQ58FF8 381 aa27.68■■■□□ 2.02
NUP88-204ENST00000572290 EMILIN1Q9Y6C2 1016 aa27.68■■■□□ 2.02
NUP88-204ENST00000572290 INSRP06213 1382 aa27.67■■■□□ 2.02
NUP88-204ENST00000572290 WNK3Q9BYP7 1800 aa27.67■■■□□ 2.02
NUP88-204ENST00000572290 SMG6Q86US8 1419 aaKnown RBP27.67■■■□□ 2.02
NUP88-204ENST00000572290 BCL9O00512 1426 aa27.65■■■□□ 2.02
NUP88-204ENST00000572290 PPM1GO15355 546 aaPredicted RBP27.64■■■□□ 2.02
NUP88-204ENST00000572290 EZH2Q15910 746 aaKnown RBP27.64■■■□□ 2.02
NUP88-204ENST00000572290 NBPF6Q5VWK0 638 aa27.64■■■□□ 2.02
NUP88-204ENST00000572290 NBPF4Q96M43 638 aa27.64■■■□□ 2.02
NUP88-204ENST00000572290 CAMKK2Q96RR4 588 aa27.64■■■□□ 2.02
NUP88-204ENST00000572290 KNSTRNQ9Y448 316 aa27.64■■■□□ 2.02
NUP88-204ENST00000572290 NSD2O96028 1365 aa27.63■■■□□ 2.01
NUP88-204ENST00000572290 PEAK1Q9H792 1746 aa27.63■■■□□ 2.01
NUP88-204ENST00000572290 TNS1Q9HBL0 1735 aaKnown RBP27.62■■■□□ 2.01
NUP88-204ENST00000572290 TNNT2P45379 298 aaPredicted RBP27.62■■■□□ 2.01
NUP88-204ENST00000572290 BCL11BQ9C0K0 894 aaPredicted RBP27.61■■■□□ 2.01
NUP88-204ENST00000572290 POLKQ9UBT6 870 aa27.61■■■□□ 2.01
NUP88-204ENST00000572290 FAM208AQ9UK61 1670 aaKnown RBP27.61■■■□□ 2.01
NUP88-204ENST00000572290 PARD3Q8TEW0 1356 aa27.6■■■□□ 2.01
NUP88-204ENST00000572290 USHBP1Q8N6Y0 703 aa27.59■■■□□ 2.01
NUP88-204ENST00000572290 WASHC2AQ641Q2 1341 aa27.59■■■□□ 2.01
NUP88-204ENST00000572290 MORC1Q86VD1 984 aa27.58■■■□□ 2.01
NUP88-204ENST00000572290 PTF1AQ7RTS3 328 aa27.56■■■□□ 2
NUP88-204ENST00000572290 DDX54Q8TDD1 881 aaKnown RBP27.56■■■□□ 2
NUP88-204ENST00000572290 RAPGEF4Q8WZA2 1011 aa27.55■■■□□ 2
NUP88-204ENST00000572290 AMER1Q5JTC6 1135 aaPredicted RBP27.54■■■□□ 2
NUP88-204ENST00000572290 ZCRB1Q8TBF4 217 aaKnown RBP27.54■■■□□ 2
NUP88-204ENST00000572290 MEGF6O75095 1541 aa27.53■■■□□ 2
NUP88-204ENST00000572290 PLSCR1O15162 318 aa27.53■■■□□ 2
NUP88-204ENST00000572290 ACSBG1Q96GR2 724 aa27.53■■■□□ 2
NUP88-204ENST00000572290 TATP17735 454 aaPredicted RBP27.52■■■□□ 2
NUP88-204ENST00000572290 KCNQ2O43526 872 aa27.51■■□□□ 1.99
NUP88-204ENST00000572290 ANKRD26Q9UPS8 1709 aa27.5■■□□□ 1.99
NUP88-204ENST00000572290 PER1O15534 1290 aaPredicted RBP27.5■■□□□ 1.99
NUP88-204ENST00000572290 PSDA5PKW4 1024 aaPredicted RBP27.49■■□□□ 1.99
NUP88-204ENST00000572290 EYA1Q99502 592 aa27.48■■□□□ 1.99
NUP88-204ENST00000572290 EIF4A2Q14240 407 aaKnown RBP27.47■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms