RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 IRF5Q13568 498 aa9.5□□□□□ -0.89
VPS53-212ENST00000572259 NUP160Q12769 1436 aa9.49□□□□□ -0.89
VPS53-212ENST00000572259 FCF1Q9Y324 198 aaKnown RBP9.49□□□□□ -0.89
VPS53-212ENST00000572259 VAC14Q08AM6 782 aa9.48□□□□□ -0.89
VPS53-212ENST00000572259 UNC93B1Q9H1C4 597 aa9.48□□□□□ -0.89
VPS53-212ENST00000572259 ZC3H4Q9UPT8 1303 aaKnown RBP9.48□□□□□ -0.89
VPS53-212ENST00000572259 NBPF14Q5TI25 921 aa9.47□□□□□ -0.89
VPS53-212ENST00000572259 GPKOWQ92917 476 aaPredicted RBP eCLIP9.47□□□□□ -0.89
VPS53-212ENST00000572259 C1orf115Q9H7X2 142 aa9.47□□□□□ -0.89
VPS53-212ENST00000572259 CEP170Q5SW79 1584 aa9.46□□□□□ -0.89
VPS53-212ENST00000572259 PPEF1O14829 653 aaPredicted RBP9.46□□□□□ -0.9
VPS53-212ENST00000572259 ZBTB24O43167 697 aaPredicted RBP9.46□□□□□ -0.9
VPS53-212ENST00000572259 PTCRAQ6ISU1 281 aaPredicted RBP9.46□□□□□ -0.9
VPS53-212ENST00000572259 CALR3Q96L12 384 aaKnown RBP9.46□□□□□ -0.9
VPS53-212ENST00000572259 POM121CA8CG34 1229 aa9.45□□□□□ -0.9
VPS53-212ENST00000572259 ZBBXA8MT70 800 aa9.45□□□□□ -0.9
VPS53-212ENST00000572259 GPR37L1O60883 481 aa9.45□□□□□ -0.9
VPS53-212ENST00000572259 PTK2Q05397 1052 aa9.45□□□□□ -0.9
VPS53-212ENST00000572259 CCDC97Q96F63 343 aaPredicted RBP9.45□□□□□ -0.9
VPS53-212ENST00000572259 LOC105371045A0A1W2PR82 267 aa9.44□□□□□ -0.9
VPS53-212ENST00000572259 EIF4G2P78344 907 aaKnown RBP eCLIP9.44□□□□□ -0.9
VPS53-212ENST00000572259 NR1H3Q13133 447 aa9.44□□□□□ -0.9
VPS53-212ENST00000572259 PDXDC2PQ6P474 469 aa9.44□□□□□ -0.9
VPS53-212ENST00000572259 RAPGEF2Q9Y4G8 1499 aa9.44□□□□□ -0.9
VPS53-212ENST00000572259 KIAA0586Q9BVV6 1533 aa9.44□□□□□ -0.9
VPS53-212ENST00000572259 ARAP1Q96P48 1450 aa9.43□□□□□ -0.9
VPS53-212ENST00000572259 RNF223E7ERA6 249 aa9.43□□□□□ -0.9
VPS53-212ENST00000572259 SEMA3FQ13275 785 aa9.43□□□□□ -0.9
VPS53-212ENST00000572259 HDGFL1Q5TGJ6 251 aa9.43□□□□□ -0.9
VPS53-212ENST00000572259 PPP1R18Q6NYC8 613 aa9.43□□□□□ -0.9
VPS53-212ENST00000572259 ANKLE1Q8NAG6 615 aa9.43□□□□□ -0.9
VPS53-212ENST00000572259 GLMNQ92990 594 aa9.43□□□□□ -0.9
VPS53-212ENST00000572259 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.43□□□□□ -0.9
VPS53-212ENST00000572259 SERPINA10Q9UK55 444 aa9.43□□□□□ -0.9
VPS53-212ENST00000572259 FBXO45P0C2W1 286 aa9.42□□□□□ -0.9
VPS53-212ENST00000572259 SOX11P35716 441 aa9.42□□□□□ -0.9
VPS53-212ENST00000572259 CCDC82Q8N4S0 544 aa9.42□□□□□ -0.9
VPS53-212ENST00000572259 BAP1Q92560 729 aa9.42□□□□□ -0.9
VPS53-212ENST00000572259 GPSM3Q9Y4H4 160 aa9.42□□□□□ -0.9
VPS53-212ENST00000572259 RUSC2Q8N2Y8 1516 aa9.41□□□□□ -0.9
VPS53-212ENST00000572259 EEA1Q15075 1411 aa9.41□□□□□ -0.9
VPS53-212ENST00000572259 PRG4Q92954 1404 aaPredicted RBP9.41□□□□□ -0.9
VPS53-212ENST00000572259 AGERQ15109 404 aa9.41□□□□□ -0.9
VPS53-212ENST00000572259 ARHGAP9Q9BRR9 750 aa9.41□□□□□ -0.9
VPS53-212ENST00000572259 SHROOM2Q13796 1616 aa9.41□□□□□ -0.9
VPS53-212ENST00000572259 LINC01559Q495D7 138 aa9.4□□□□□ -0.9
VPS53-212ENST00000572259 ZBTB33Q86T24 672 aa9.4□□□□□ -0.9
VPS53-212ENST00000572259 FAM9AQ8IZU1 332 aaPredicted RBP9.4□□□□□ -0.9
VPS53-212ENST00000572259 HMGB1P09429 215 aaKnown RBP9.39□□□□□ -0.91
VPS53-212ENST00000572259 ZNF592Q92610 1267 aa9.39□□□□□ -0.91
VPS53-212ENST00000572259 CARMIL2Q6F5E8 1435 aa9.39□□□□□ -0.91
VPS53-212ENST00000572259 EIF5BO60841 1220 aaKnown RBP9.38□□□□□ -0.91
VPS53-212ENST00000572259 BPHLQ86WA6 291 aaPredicted RBP9.38□□□□□ -0.91
VPS53-212ENST00000572259 ZNF511Q8NB15 262 aa9.38□□□□□ -0.91
VPS53-212ENST00000572259 ALG2Q9H553 416 aa9.38□□□□□ -0.91
VPS53-212ENST00000572259 MAGEB6P1A0A0J9YX57 407 aa9.37□□□□□ -0.91
VPS53-212ENST00000572259 CARD14Q9BXL6 1004 aa9.37□□□□□ -0.91
VPS53-212ENST00000572259 IQGAP2Q13576 1575 aa9.37□□□□□ -0.91
VPS53-212ENST00000572259 CD2BP2O95400 341 aaKnown RBP9.36□□□□□ -0.91
VPS53-212ENST00000572259 MCCD1P59942 119 aaPredicted RBP9.36□□□□□ -0.91
VPS53-212ENST00000572259 IFFO2Q5TF58 517 aa9.36□□□□□ -0.91
VPS53-212ENST00000572259 PCDHB9Q9Y5E1 797 aa9.36□□□□□ -0.91
VPS53-212ENST00000572259 PRXQ9BXM0 1461 aa9.35□□□□□ -0.91
VPS53-212ENST00000572259 RPIAP49247 311 aa9.35□□□□□ -0.91
VPS53-212ENST00000572259 SH3BP2P78314 561 aa9.35□□□□□ -0.91
VPS53-212ENST00000572259 TRIM32Q13049 653 aa9.35□□□□□ -0.91
VPS53-212ENST00000572259 ERCC6L2Q5T890 1561 aa9.35□□□□□ -0.91
VPS53-212ENST00000572259 SH3BP5LQ7L8J4 393 aa9.35□□□□□ -0.91
VPS53-212ENST00000572259 KCTD17Q8N5Z5 321 aa9.35□□□□□ -0.91
VPS53-212ENST00000572259 ADAM32Q8TC27 787 aa9.35□□□□□ -0.91
VPS53-212ENST00000572259 ADAMTS19Q8TE59 1207 aa9.35□□□□□ -0.91
VPS53-212ENST00000572259 FOXJ1Q92949 421 aa9.35□□□□□ -0.91
VPS53-212ENST00000572259 PLA2G2EQ9NZK7 142 aa9.35□□□□□ -0.91
VPS53-212ENST00000572259 PLA2G2CQ5R387 149 aa9.34□□□□□ -0.91
VPS53-212ENST00000572259 DZIP3Q86Y13 1208 aaKnown RBP9.34□□□□□ -0.91
VPS53-212ENST00000572259 PTPRGP23470 1445 aa9.33□□□□□ -0.92
VPS53-212ENST00000572259 OCSTAMPQ9BR26 566 aa9.33□□□□□ -0.92
VPS53-212ENST00000572259 TNIKQ9UKE5 1360 aa9.33□□□□□ -0.92
VPS53-212ENST00000572259 CTTNBP2Q8WZ74 1663 aa9.32□□□□□ -0.92
VPS53-212ENST00000572259 WNT7BP56706 349 aa9.32□□□□□ -0.92
VPS53-212ENST00000572259 SH3RF1Q7Z6J0 888 aa9.32□□□□□ -0.92
VPS53-212ENST00000572259 GOLGA3Q08378 1498 aa9.32□□□□□ -0.92
VPS53-212ENST00000572259 UGGT2Q9NYU1 1516 aa9.31□□□□□ -0.92
VPS53-212ENST00000572259 SLC19A1P41440 591 aa9.3□□□□□ -0.92
VPS53-212ENST00000572259 ERFEQ4G0M1 354 aa9.3□□□□□ -0.92
VPS53-212ENST00000572259 SLC10A4Q96EP9 437 aa9.3□□□□□ -0.92
VPS53-212ENST00000572259 IGSF3O75054 1194 aa9.29□□□□□ -0.92
VPS53-212ENST00000572259 VARSP26640 1264 aaKnown RBP9.29□□□□□ -0.92
VPS53-212ENST00000572259 SLFNL1Q499Z3 407 aa9.29□□□□□ -0.92
VPS53-212ENST00000572259 LIAT1Q6ZQX7 453 aa9.29□□□□□ -0.92
VPS53-212ENST00000572259 EHBP1Q8NDI1 1231 aa9.29□□□□□ -0.92
VPS53-212ENST00000572259 FAM174AQ8TBP5 190 aa9.29□□□□□ -0.92
VPS53-212ENST00000572259 PPP1R12CQ9BZL4 782 aa9.29□□□□□ -0.92
VPS53-212ENST00000572259 CEP126Q9P2H0 1117 aa9.29□□□□□ -0.92
VPS53-212ENST00000572259 RFX1P22670 979 aa9.28□□□□□ -0.92
VPS53-212ENST00000572259 C4orf48Q5BLP8 95 aa9.28□□□□□ -0.92
VPS53-212ENST00000572259 TRAIPQ9BWF2 469 aa9.28□□□□□ -0.92
VPS53-212ENST00000572259 TFIP11Q9UBB9 837 aaKnown RBP9.28□□□□□ -0.92
VPS53-212ENST00000572259 A0A0G2JS52 829 aa9.27□□□□□ -0.93
VPS53-212ENST00000572259 PALM3A6NDB9 673 aaPredicted RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms