RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 SIN3AQ96ST3 1273 aa14.53□□□□□ -0.08
VPS39-211ENST00000568755 CPSF1Q10570 1443 aaKnown RBP14.52□□□□□ -0.08
VPS39-211ENST00000568755 KAT6BQ8WYB5 2073 aa14.52□□□□□ -0.09
VPS39-211ENST00000568755 NFAT5O94916 1531 aa14.51□□□□□ -0.09
VPS39-211ENST00000568755 OVOS2A0A0G2JMS6 1433 aa14.51□□□□□ -0.09
VPS39-211ENST00000568755 OVOS2A0A0J9YW53 1432 aa14.51□□□□□ -0.09
VPS39-211ENST00000568755 OVOS2Q6IE36 1432 aa14.51□□□□□ -0.09
VPS39-211ENST00000568755 ROCK2O75116 1388 aaKnown RBP14.51□□□□□ -0.09
VPS39-211ENST00000568755 LTN1O94822 1766 aa14.5□□□□□ -0.09
VPS39-211ENST00000568755 AXIN2Q9Y2T1 843 aa14.5□□□□□ -0.09
VPS39-211ENST00000568755 ABCC6O95255 1503 aa14.5□□□□□ -0.09
VPS39-211ENST00000568755 TTC21BQ7Z4L5 1316 aa14.49□□□□□ -0.09
VPS39-211ENST00000568755 ZBTB7CA1YPR0 619 aa14.49□□□□□ -0.09
VPS39-211ENST00000568755 C11orf95C9JLR9 678 aaPredicted RBP14.49□□□□□ -0.09
VPS39-211ENST00000568755 WDR17Q8IZU2 1322 aa14.48□□□□□ -0.09
VPS39-211ENST00000568755 ARHGEF25Q86VW2 580 aa14.48□□□□□ -0.09
VPS39-211ENST00000568755 ZNF692Q9BU19 519 aaPredicted RBP14.48□□□□□ -0.09
VPS39-211ENST00000568755 SBNO2Q9Y2G9 1366 aa14.47□□□□□ -0.09
VPS39-211ENST00000568755 CASZ1Q86V15 1759 aa14.47□□□□□ -0.09
VPS39-211ENST00000568755 TTC21AQ8NDW8 1320 aa14.47□□□□□ -0.09
VPS39-211ENST00000568755 TOM1L2Q6ZVM7 507 aa14.47□□□□□ -0.09
VPS39-211ENST00000568755 BCL9O00512 1426 aa14.47□□□□□ -0.09
VPS39-211ENST00000568755 CD163L1Q9NR16 1453 aa14.46□□□□□ -0.09
VPS39-211ENST00000568755 NEUROD1Q13562 356 aa14.46□□□□□ -0.09
VPS39-211ENST00000568755 DDB1Q16531 1140 aa14.46□□□□□ -0.09
VPS39-211ENST00000568755 KCNH5Q8NCM2 988 aa14.46□□□□□ -0.09
VPS39-211ENST00000568755 HOXD11P31277 338 aaPredicted RBP14.45□□□□□ -0.1
VPS39-211ENST00000568755 NCBP3Q53F19 620 aaKnown RBP14.45□□□□□ -0.1
VPS39-211ENST00000568755 NBPF14Q5TI25 921 aa14.45□□□□□ -0.1
VPS39-211ENST00000568755 KTN1Q86UP2 1357 aaKnown RBP14.45□□□□□ -0.1
VPS39-211ENST00000568755 PLSCR1O15162 318 aa14.44□□□□□ -0.1
VPS39-211ENST00000568755 CDCA7Q9BWT1 371 aaPredicted RBP14.44□□□□□ -0.1
VPS39-211ENST00000568755 NHSQ6T4R5 1651 aa14.43□□□□□ -0.1
VPS39-211ENST00000568755 PTF1AQ7RTS3 328 aa14.43□□□□□ -0.1
VPS39-211ENST00000568755 MARCH10Q8NA82 808 aaPredicted RBP14.43□□□□□ -0.1
VPS39-211ENST00000568755 CARD10Q9BWT7 1032 aa14.43□□□□□ -0.1
VPS39-211ENST00000568755 USP31Q70CQ4 1352 aa14.43□□□□□ -0.1
VPS39-211ENST00000568755 SOX12O15370 315 aa14.42□□□□□ -0.1
VPS39-211ENST00000568755 BCL11BQ9C0K0 894 aaPredicted RBP14.42□□□□□ -0.1
VPS39-211ENST00000568755 UTRNP46939 3433 aa14.42□□□□□ -0.1
VPS39-211ENST00000568755 TNS2Q63HR2 1409 aa14.41□□□□□ -0.1
VPS39-211ENST00000568755 RNF216Q9NWF9 866 aaPredicted RBP14.41□□□□□ -0.1
VPS39-211ENST00000568755 CCDC7Q96M83 1385 aa14.41□□□□□ -0.1
VPS39-211ENST00000568755 ANO8Q9HCE9 1232 aaPredicted RBP14.4□□□□□ -0.1
VPS39-211ENST00000568755 BTAF1O14981 1849 aa14.4□□□□□ -0.1
VPS39-211ENST00000568755 CSB-PGBD3P0DP91 1061 aa14.39□□□□□ -0.11
VPS39-211ENST00000568755 PROM2Q8N271 834 aa14.39□□□□□ -0.11
VPS39-211ENST00000568755 FAM208AQ9UK61 1670 aaKnown RBP14.39□□□□□ -0.11
VPS39-211ENST00000568755 KCNQ2O43526 872 aa14.38□□□□□ -0.11
VPS39-211ENST00000568755 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.38□□□□□ -0.11
VPS39-211ENST00000568755 CARD11Q9BXL7 1154 aa14.38□□□□□ -0.11
VPS39-211ENST00000568755 SPON1Q9HCB6 807 aa14.38□□□□□ -0.11
VPS39-211ENST00000568755 EDC4Q6P2E9 1401 aaKnown RBP14.38□□□□□ -0.11
VPS39-211ENST00000568755 ERBB3P21860 1342 aa14.38□□□□□ -0.11
VPS39-211ENST00000568755 MYOM1P52179 1685 aa14.37□□□□□ -0.11
VPS39-211ENST00000568755 NME9Q86XW9 330 aa14.37□□□□□ -0.11
VPS39-211ENST00000568755 PAPPAQ13219 1627 aa14.37□□□□□ -0.11
VPS39-211ENST00000568755 RGPD2P0DJD1 1756 aa14.37□□□□□ -0.11
VPS39-211ENST00000568755 NINLQ9Y2I6 1382 aa14.36□□□□□ -0.11
VPS39-211ENST00000568755 EXOC5O00471 708 aa14.36□□□□□ -0.11
VPS39-211ENST00000568755 A0A1W2PP64 1363 aa14.35□□□□□ -0.11
VPS39-211ENST00000568755 SLC12A5Q9H2X9 1139 aa14.35□□□□□ -0.11
VPS39-211ENST00000568755 TXNRD1Q16881 649 aa14.34□□□□□ -0.11
VPS39-211ENST00000568755 PUS7Q96PZ0 661 aaKnown RBP14.34□□□□□ -0.11
VPS39-211ENST00000568755 PDGFDQ9GZP0 370 aaPredicted RBP14.34□□□□□ -0.11
VPS39-211ENST00000568755 SHANK3Q9BYB0 1731 aa14.33□□□□□ -0.12
VPS39-211ENST00000568755 HDGFL2Q7Z4V5 671 aaPredicted RBP14.33□□□□□ -0.12
VPS39-211ENST00000568755 TMC1Q8TDI8 760 aa14.33□□□□□ -0.12
VPS39-211ENST00000568755 PPP1R1BQ9UD71 204 aaPredicted RBP14.33□□□□□ -0.12
VPS39-211ENST00000568755 CHD4Q14839 1912 aa14.33□□□□□ -0.12
VPS39-211ENST00000568755 TONSLQ96HA7 1378 aa14.33□□□□□ -0.12
VPS39-211ENST00000568755 QSER1Q2KHR3 1735 aa14.32□□□□□ -0.12
VPS39-211ENST00000568755 NLRP2Q9NX02 1062 aa14.32□□□□□ -0.12
VPS39-211ENST00000568755 TUBGCP6Q96RT7 1819 aa14.31□□□□□ -0.12
VPS39-211ENST00000568755 IL2RBP14784 551 aa14.31□□□□□ -0.12
VPS39-211ENST00000568755 ANKRD24Q8TF21 1146 aa14.31□□□□□ -0.12
VPS39-211ENST00000568755 TESK2Q96S53 571 aa14.31□□□□□ -0.12
VPS39-211ENST00000568755 TERF2IPQ9NYB0 399 aa14.31□□□□□ -0.12
VPS39-211ENST00000568755 GOLGB1Q14789 3259 aaKnown RBP14.3□□□□□ -0.12
VPS39-211ENST00000568755 PTGER2P43116 358 aa14.3□□□□□ -0.12
VPS39-211ENST00000568755 SLC15A2Q16348 729 aa14.3□□□□□ -0.12
VPS39-211ENST00000568755 STK32BQ9NY57 414 aa14.3□□□□□ -0.12
VPS39-211ENST00000568755 DOT1LQ8TEK3 1739 aa14.29□□□□□ -0.12
VPS39-211ENST00000568755 DCAF8L1A6NGE4 600 aa14.29□□□□□ -0.12
VPS39-211ENST00000568755 ZBTB7AO95365 584 aa14.29□□□□□ -0.12
VPS39-211ENST00000568755 ACSBG1Q96GR2 724 aa14.29□□□□□ -0.12
VPS39-211ENST00000568755 LY75O60449 1722 aa14.29□□□□□ -0.12
VPS39-211ENST00000568755 COL24A1Q17RW2 1714 aa14.29□□□□□ -0.12
VPS39-211ENST00000568755 YY1P25490 414 aa14.28□□□□□ -0.12
VPS39-211ENST00000568755 IP6K1Q92551 441 aa14.28□□□□□ -0.12
VPS39-211ENST00000568755 KIF20BQ96Q89 1820 aa14.28□□□□□ -0.12
VPS39-211ENST00000568755 ST20-MTHFSA0A0A6YYL1 179 aa14.26□□□□□ -0.13
VPS39-211ENST00000568755 SGIP1Q9BQI5 828 aa14.26□□□□□ -0.13
VPS39-211ENST00000568755 NPM3O75607 178 aaKnown RBP14.25□□□□□ -0.13
VPS39-211ENST00000568755 MTFR1LQ9H019 292 aa14.25□□□□□ -0.13
VPS39-211ENST00000568755 ATF5Q9Y2D1 282 aaPredicted RBP14.25□□□□□ -0.13
VPS39-211ENST00000568755 ANKRD36BQ8N2N9 1353 aa14.24□□□□□ -0.13
VPS39-211ENST00000568755 MAP3K19Q56UN5 1328 aa14.24□□□□□ -0.13
VPS39-211ENST00000568755 HOXC9P31274 260 aa14.23□□□□□ -0.13
VPS39-211ENST00000568755 ZNF827Q17R98 1081 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms