RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 AXIN2Q9Y2T1 843 aa26.07■■□□□ 1.76
CLN3-227ENST00000567495 EIF4G2P78344 907 aaKnown RBP eCLIP26.06■■□□□ 1.76
CLN3-227ENST00000567495 WDR17Q8IZU2 1322 aa26.06■■□□□ 1.76
CLN3-227ENST00000567495 NFAT5O94916 1531 aa26.05■■□□□ 1.76
CLN3-227ENST00000567495 TOM1L2Q6ZVM7 507 aa26.05■■□□□ 1.76
CLN3-227ENST00000567495 THSD7AQ9UPZ6 1657 aa26.04■■□□□ 1.76
CLN3-227ENST00000567495 COG3Q96JB2 828 aa26.04■■□□□ 1.76
CLN3-227ENST00000567495 ABCC6O95255 1503 aa26.04■■□□□ 1.76
CLN3-227ENST00000567495 PDE3BQ13370 1112 aa26.03■■□□□ 1.76
CLN3-227ENST00000567495 BRWD3Q6RI45 1802 aa26.02■■□□□ 1.76
CLN3-227ENST00000567495 CSB-PGBD3P0DP91 1061 aa26.02■■□□□ 1.76
CLN3-227ENST00000567495 OVOS2A0A0J9YW53 1432 aa26.02■■□□□ 1.76
CLN3-227ENST00000567495 OVOS2Q6IE36 1432 aa26.02■■□□□ 1.76
CLN3-227ENST00000567495 FAM196AQ6ZSG2 479 aa26.01■■□□□ 1.75
CLN3-227ENST00000567495 CDCA7Q9BWT1 371 aaPredicted RBP26.01■■□□□ 1.75
CLN3-227ENST00000567495 USP54Q70EL1 1684 aa26■■□□□ 1.75
CLN3-227ENST00000567495 CARD10Q9BWT7 1032 aa26■■□□□ 1.75
CLN3-227ENST00000567495 C11orf95C9JLR9 678 aaPredicted RBP25.99■■□□□ 1.75
CLN3-227ENST00000567495 COL18A1P39060 1754 aa25.98■■□□□ 1.75
CLN3-227ENST00000567495 FYB1O15117 783 aa25.96■■□□□ 1.75
CLN3-227ENST00000567495 HSPA5P11021 654 aaKnown RBP25.96■■□□□ 1.75
CLN3-227ENST00000567495 BAG6P46379 1132 aa25.95■■□□□ 1.74
CLN3-227ENST00000567495 CCDC7Q96M83 1385 aa25.95■■□□□ 1.74
CLN3-227ENST00000567495 ERBB3P21860 1342 aa25.94■■□□□ 1.74
CLN3-227ENST00000567495 FAM182BQ5T319 152 aa25.94■■□□□ 1.74
CLN3-227ENST00000567495 IP6K1Q92551 441 aa25.93■■□□□ 1.74
CLN3-227ENST00000567495 DDB1Q16531 1140 aa25.92■■□□□ 1.74
CLN3-227ENST00000567495 DEFB132Q7Z7B7 95 aa25.91■■□□□ 1.74
CLN3-227ENST00000567495 CARD14Q9BXL6 1004 aa25.9■■□□□ 1.74
CLN3-227ENST00000567495 GGNBP2Q9H3C7 697 aa25.9■■□□□ 1.74
CLN3-227ENST00000567495 NLRP2Q9NX02 1062 aa25.9■■□□□ 1.74
CLN3-227ENST00000567495 ANKRD24Q8TF21 1146 aa25.89■■□□□ 1.74
CLN3-227ENST00000567495 MAP3K19Q56UN5 1328 aa25.88■■□□□ 1.73
CLN3-227ENST00000567495 AMPHP49418 695 aa25.88■■□□□ 1.73
CLN3-227ENST00000567495 TRIM37O94972 964 aa25.87■■□□□ 1.73
CLN3-227ENST00000567495 POLR3GLQ9BT43 218 aa25.87■■□□□ 1.73
CLN3-227ENST00000567495 CGNL1Q0VF96 1302 aa25.87■■□□□ 1.73
CLN3-227ENST00000567495 DISP2A7MBM2 1401 aa25.86■■□□□ 1.73
CLN3-227ENST00000567495 NSD3Q9BZ95 1437 aa25.86■■□□□ 1.73
CLN3-227ENST00000567495 EXOC5O00471 708 aa25.85■■□□□ 1.73
CLN3-227ENST00000567495 PARP4Q9UKK3 1724 aaKnown RBP25.85■■□□□ 1.73
CLN3-227ENST00000567495 RTL1A6NKG5 1358 aa25.84■■□□□ 1.73
CLN3-227ENST00000567495 HOXC9P31274 260 aa25.84■■□□□ 1.73
CLN3-227ENST00000567495 OVOS2A0A0G2JMS6 1433 aa25.83■■□□□ 1.73
CLN3-227ENST00000567495 KIF24Q5T7B8 1368 aa25.82■■□□□ 1.72
CLN3-227ENST00000567495 IL2RBP14784 551 aa25.81■■□□□ 1.72
CLN3-227ENST00000567495 EN1Q05925 392 aaPredicted RBP25.81■■□□□ 1.72
CLN3-227ENST00000567495 APBA3O96018 575 aa25.8■■□□□ 1.72
CLN3-227ENST00000567495 FBLN1P23142 703 aa25.8■■□□□ 1.72
CLN3-227ENST00000567495 RRS1Q15050 365 aaKnown RBP25.8■■□□□ 1.72
CLN3-227ENST00000567495 MYOM1P52179 1685 aa25.8■■□□□ 1.72
CLN3-227ENST00000567495 PARD3Q8TEW0 1356 aa25.8■■□□□ 1.72
CLN3-227ENST00000567495 BCL9O00512 1426 aa25.8■■□□□ 1.72
CLN3-227ENST00000567495 LTN1O94822 1766 aa25.79■■□□□ 1.72
CLN3-227ENST00000567495 LTV1Q96GA3 475 aaPredicted RBP25.79■■□□□ 1.72
CLN3-227ENST00000567495 RGPD1P0DJD0 1748 aa25.79■■□□□ 1.72
CLN3-227ENST00000567495 RGPD5Q99666 1765 aa25.79■■□□□ 1.72
CLN3-227ENST00000567495 MARCH10Q8NA82 808 aaPredicted RBP25.78■■□□□ 1.72
CLN3-227ENST00000567495 CAMKK2Q96RR4 588 aa25.76■■□□□ 1.71
CLN3-227ENST00000567495 PANK3Q9H999 370 aa25.76■■□□□ 1.71
CLN3-227ENST00000567495 LRRC37A3O60309 1634 aa25.76■■□□□ 1.71
CLN3-227ENST00000567495 TNS2Q63HR2 1409 aa25.75■■□□□ 1.71
CLN3-227ENST00000567495 SMG6Q86US8 1419 aaKnown RBP25.74■■□□□ 1.71
CLN3-227ENST00000567495 FLT4P35916 1363 aa25.74■■□□□ 1.71
CLN3-227ENST00000567495 BCL11BQ9C0K0 894 aaPredicted RBP25.74■■□□□ 1.71
CLN3-227ENST00000567495 INSRP06213 1382 aa25.73■■□□□ 1.71
CLN3-227ENST00000567495 EZH2Q15910 746 aaKnown RBP25.72■■□□□ 1.71
CLN3-227ENST00000567495 HSP90AB2PQ58FF8 381 aa25.7■■□□□ 1.7
CLN3-227ENST00000567495 KIF20BQ96Q89 1820 aa25.7■■□□□ 1.7
CLN3-227ENST00000567495 NSD2O96028 1365 aa25.69■■□□□ 1.7
CLN3-227ENST00000567495 WNK3Q9BYP7 1800 aa25.69■■□□□ 1.7
CLN3-227ENST00000567495 PEAK1Q9H792 1746 aa25.68■■□□□ 1.7
CLN3-227ENST00000567495 TNS1Q9HBL0 1735 aaKnown RBP25.68■■□□□ 1.7
CLN3-227ENST00000567495 FAM208AQ9UK61 1670 aaKnown RBP25.68■■□□□ 1.7
CLN3-227ENST00000567495 PLSCR1O15162 318 aa25.68■■□□□ 1.7
CLN3-227ENST00000567495 KIF7Q2M1P5 1343 aa25.67■■□□□ 1.7
CLN3-227ENST00000567495 NBPF6Q5VWK0 638 aa25.67■■□□□ 1.7
CLN3-227ENST00000567495 NBPF4Q96M43 638 aa25.67■■□□□ 1.7
CLN3-227ENST00000567495 KNSTRNQ9Y448 316 aa25.67■■□□□ 1.7
CLN3-227ENST00000567495 EMILIN1Q9Y6C2 1016 aa25.67■■□□□ 1.7
CLN3-227ENST00000567495 PPM1GO15355 546 aaPredicted RBP25.66■■□□□ 1.7
CLN3-227ENST00000567495 WASHC2AQ641Q2 1341 aa25.65■■□□□ 1.7
CLN3-227ENST00000567495 RAPGEF4Q8WZA2 1011 aa25.64■■□□□ 1.7
CLN3-227ENST00000567495 POLKQ9UBT6 870 aa25.64■■□□□ 1.7
CLN3-227ENST00000567495 NBPF14Q5TI25 921 aa25.63■■□□□ 1.69
CLN3-227ENST00000567495 ZCRB1Q8TBF4 217 aaKnown RBP25.63■■□□□ 1.69
CLN3-227ENST00000567495 DDX54Q8TDD1 881 aaKnown RBP25.62■■□□□ 1.69
CLN3-227ENST00000567495 TNNT2P45379 298 aaPredicted RBP25.6■■□□□ 1.69
CLN3-227ENST00000567495 TATP17735 454 aaPredicted RBP25.59■■□□□ 1.69
CLN3-227ENST00000567495 PTF1AQ7RTS3 328 aa25.59■■□□□ 1.69
CLN3-227ENST00000567495 MORC1Q86VD1 984 aa25.59■■□□□ 1.69
CLN3-227ENST00000567495 R3HDM1Q15032 1099 aaKnown RBP25.58■■□□□ 1.69
CLN3-227ENST00000567495 PSDA5PKW4 1024 aaPredicted RBP25.57■■□□□ 1.68
CLN3-227ENST00000567495 KCNQ2O43526 872 aa25.57■■□□□ 1.68
CLN3-227ENST00000567495 USHBP1Q8N6Y0 703 aa25.57■■□□□ 1.68
CLN3-227ENST00000567495 SRCAPQ6ZRS2 3230 aa25.56■■□□□ 1.68
CLN3-227ENST00000567495 MEGF6O75095 1541 aa25.56■■□□□ 1.68
CLN3-227ENST00000567495 ACSBG1Q96GR2 724 aa25.55■■□□□ 1.68
CLN3-227ENST00000567495 AMER1Q5JTC6 1135 aaPredicted RBP25.54■■□□□ 1.68
CLN3-227ENST00000567495 SBF2Q86WG5 1849 aa25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms