RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 FAM196AQ6ZSG2 479 aa26.25■■□□□ 1.79
SMPD3-209ENST00000567223 TMC1Q8TDI8 760 aa26.25■■□□□ 1.79
SMPD3-209ENST00000567223 USP35Q9P2H5 1018 aa26.25■■□□□ 1.79
SMPD3-209ENST00000567223 TNS1Q9HBL0 1735 aaKnown RBP26.25■■□□□ 1.79
SMPD3-209ENST00000567223 C11orf95C9JLR9 678 aaPredicted RBP26.24■■□□□ 1.79
SMPD3-209ENST00000567223 BAG6P46379 1132 aa26.24■■□□□ 1.79
SMPD3-209ENST00000567223 AXIN2Q9Y2T1 843 aa26.24■■□□□ 1.79
SMPD3-209ENST00000567223 OVOS2A0A0J9YW53 1432 aa26.23■■□□□ 1.79
SMPD3-209ENST00000567223 OVOS2Q6IE36 1432 aa26.23■■□□□ 1.79
SMPD3-209ENST00000567223 DEFB132Q7Z7B7 95 aa26.23■■□□□ 1.79
SMPD3-209ENST00000567223 WNK3Q9BYP7 1800 aa26.21■■□□□ 1.79
SMPD3-209ENST00000567223 ANKRD36BQ8N2N9 1353 aa26.2■■□□□ 1.79
SMPD3-209ENST00000567223 TMF1P82094 1093 aa26.2■■□□□ 1.78
SMPD3-209ENST00000567223 PDE3BQ13370 1112 aa26.2■■□□□ 1.78
SMPD3-209ENST00000567223 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.2■■□□□ 1.78
SMPD3-209ENST00000567223 CDCA7Q9BWT1 371 aaPredicted RBP26.2■■□□□ 1.78
SMPD3-209ENST00000567223 NME9Q86XW9 330 aa26.19■■□□□ 1.78
SMPD3-209ENST00000567223 LRRC37A3O60309 1634 aa26.18■■□□□ 1.78
SMPD3-209ENST00000567223 FAM182BQ5T319 152 aa26.18■■□□□ 1.78
SMPD3-209ENST00000567223 CDCA8Q53HL2 280 aa26.17■■□□□ 1.78
SMPD3-209ENST00000567223 TOM1L2Q6ZVM7 507 aa26.17■■□□□ 1.78
SMPD3-209ENST00000567223 CARD10Q9BWT7 1032 aa26.17■■□□□ 1.78
SMPD3-209ENST00000567223 RGPD5Q99666 1765 aa26.17■■□□□ 1.78
SMPD3-209ENST00000567223 PARD3Q8TEW0 1356 aa26.17■■□□□ 1.78
SMPD3-209ENST00000567223 PEAK1Q9H792 1746 aa26.16■■□□□ 1.78
SMPD3-209ENST00000567223 BCL9O00512 1426 aa26.15■■□□□ 1.78
SMPD3-209ENST00000567223 ZBTB7CA1YPR0 619 aa26.15■■□□□ 1.78
SMPD3-209ENST00000567223 CCDC7Q96M83 1385 aa26.15■■□□□ 1.78
SMPD3-209ENST00000567223 LTN1O94822 1766 aa26.15■■□□□ 1.78
SMPD3-209ENST00000567223 OVOS2A0A0G2JMS6 1433 aa26.14■■□□□ 1.77
SMPD3-209ENST00000567223 ERBB3P21860 1342 aa26.14■■□□□ 1.77
SMPD3-209ENST00000567223 PCGF6Q9BYE7 350 aa26.13■■□□□ 1.77
SMPD3-209ENST00000567223 SOX12O15370 315 aa26.11■■□□□ 1.77
SMPD3-209ENST00000567223 TRIM37O94972 964 aa26.1■■□□□ 1.77
SMPD3-209ENST00000567223 DDB1Q16531 1140 aa26.1■■□□□ 1.77
SMPD3-209ENST00000567223 EN1Q05925 392 aaPredicted RBP26.08■■□□□ 1.77
SMPD3-209ENST00000567223 CAMKK2Q96RR4 588 aa26.08■■□□□ 1.77
SMPD3-209ENST00000567223 CSB-PGBD3P0DP91 1061 aa26.07■■□□□ 1.76
SMPD3-209ENST00000567223 RGPD3A6NKT7 1758 aaPredicted RBP26.07■■□□□ 1.76
SMPD3-209ENST00000567223 RGPD4Q7Z3J3 1758 aa26.07■■□□□ 1.76
SMPD3-209ENST00000567223 RREB1Q92766 1687 aa26.06■■□□□ 1.76
SMPD3-209ENST00000567223 FAM208AQ9UK61 1670 aaKnown RBP26.06■■□□□ 1.76
SMPD3-209ENST00000567223 COG3Q96JB2 828 aa26.06■■□□□ 1.76
SMPD3-209ENST00000567223 MYOM1P52179 1685 aa26.06■■□□□ 1.76
SMPD3-209ENST00000567223 IP6K1Q92551 441 aa26.04■■□□□ 1.76
SMPD3-209ENST00000567223 TNS2Q63HR2 1409 aa26.04■■□□□ 1.76
SMPD3-209ENST00000567223 SBF2Q86WG5 1849 aa26.03■■□□□ 1.76
SMPD3-209ENST00000567223 APBA3O96018 575 aa26.03■■□□□ 1.76
SMPD3-209ENST00000567223 RTL1A6NKG5 1358 aa26.02■■□□□ 1.76
SMPD3-209ENST00000567223 LRP5O75197 1615 aa26.02■■□□□ 1.76
SMPD3-209ENST00000567223 FYB1O15117 783 aa26.01■■□□□ 1.75
SMPD3-209ENST00000567223 EZH2Q15910 746 aaKnown RBP26.01■■□□□ 1.75
SMPD3-209ENST00000567223 ANKRD24Q8TF21 1146 aa26.01■■□□□ 1.75
SMPD3-209ENST00000567223 MARCH10Q8NA82 808 aaPredicted RBP26■■□□□ 1.75
SMPD3-209ENST00000567223 EXOC5O00471 708 aa25.99■■□□□ 1.75
SMPD3-209ENST00000567223 MAP3K19Q56UN5 1328 aa25.98■■□□□ 1.75
SMPD3-209ENST00000567223 PLSCR1O15162 318 aa25.98■■□□□ 1.75
SMPD3-209ENST00000567223 CCER1Q8TC90 406 aaPredicted RBP25.98■■□□□ 1.75
SMPD3-209ENST00000567223 NUP188Q5SRE5 1749 aa25.97■■□□□ 1.75
SMPD3-209ENST00000567223 KIF24Q5T7B8 1368 aa25.97■■□□□ 1.75
SMPD3-209ENST00000567223 BCL11BQ9C0K0 894 aaPredicted RBP25.97■■□□□ 1.75
SMPD3-209ENST00000567223 KIF20BQ96Q89 1820 aa25.97■■□□□ 1.75
SMPD3-209ENST00000567223 IL2RBP14784 551 aa25.96■■□□□ 1.75
SMPD3-209ENST00000567223 NLRP2Q9NX02 1062 aa25.96■■□□□ 1.75
SMPD3-209ENST00000567223 HOXC9P31274 260 aa25.95■■□□□ 1.74
SMPD3-209ENST00000567223 CARD14Q9BXL6 1004 aa25.92■■□□□ 1.74
SMPD3-209ENST00000567223 EIF4G2P78344 907 aaKnown RBP eCLIP25.91■■□□□ 1.74
SMPD3-209ENST00000567223 GGNBP2Q9H3C7 697 aa25.91■■□□□ 1.74
SMPD3-209ENST00000567223 NHSQ6T4R5 1651 aa25.9■■□□□ 1.74
SMPD3-209ENST00000567223 NSD3Q9BZ95 1437 aa25.89■■□□□ 1.74
SMPD3-209ENST00000567223 AMPHP49418 695 aa25.89■■□□□ 1.74
SMPD3-209ENST00000567223 PSDA5PKW4 1024 aaPredicted RBP25.88■■□□□ 1.73
SMPD3-209ENST00000567223 R3HDM1Q15032 1099 aaKnown RBP25.87■■□□□ 1.73
SMPD3-209ENST00000567223 ANKRD26Q9UPS8 1709 aa25.86■■□□□ 1.73
SMPD3-209ENST00000567223 INSRP06213 1382 aa25.86■■□□□ 1.73
SMPD3-209ENST00000567223 FLT4P35916 1363 aa25.86■■□□□ 1.73
SMPD3-209ENST00000567223 NBPF14Q5TI25 921 aa25.86■■□□□ 1.73
SMPD3-209ENST00000567223 SMG6Q86US8 1419 aaKnown RBP25.85■■□□□ 1.73
SMPD3-209ENST00000567223 CGNL1Q0VF96 1302 aa25.85■■□□□ 1.73
SMPD3-209ENST00000567223 FBLN1P23142 703 aa25.84■■□□□ 1.73
SMPD3-209ENST00000567223 RRS1Q15050 365 aaKnown RBP25.84■■□□□ 1.73
SMPD3-209ENST00000567223 HSPA5P11021 654 aaKnown RBP25.83■■□□□ 1.73
SMPD3-209ENST00000567223 PTF1AQ7RTS3 328 aa25.83■■□□□ 1.73
SMPD3-209ENST00000567223 LTV1Q96GA3 475 aaPredicted RBP25.8■■□□□ 1.72
SMPD3-209ENST00000567223 PROM2Q8N271 834 aa25.79■■□□□ 1.72
SMPD3-209ENST00000567223 RGPD2P0DJD1 1756 aa25.79■■□□□ 1.72
SMPD3-209ENST00000567223 NCAPD2Q15021 1401 aa25.79■■□□□ 1.72
SMPD3-209ENST00000567223 SHANK3Q9BYB0 1731 aa25.78■■□□□ 1.72
SMPD3-209ENST00000567223 MEGF6O75095 1541 aa25.78■■□□□ 1.72
SMPD3-209ENST00000567223 NBPF6Q5VWK0 638 aa25.77■■□□□ 1.72
SMPD3-209ENST00000567223 NBPF4Q96M43 638 aa25.77■■□□□ 1.72
SMPD3-209ENST00000567223 KCNQ2O43526 872 aa25.76■■□□□ 1.71
SMPD3-209ENST00000567223 HSP90AB2PQ58FF8 381 aa25.76■■□□□ 1.71
SMPD3-209ENST00000567223 NSD2O96028 1365 aa25.75■■□□□ 1.71
SMPD3-209ENST00000567223 TXNRD1Q16881 649 aa25.74■■□□□ 1.71
SMPD3-209ENST00000567223 BTAF1O14981 1849 aa25.74■■□□□ 1.71
SMPD3-209ENST00000567223 WASHC2AQ641Q2 1341 aa25.73■■□□□ 1.71
SMPD3-209ENST00000567223 ZCRB1Q8TBF4 217 aaKnown RBP25.73■■□□□ 1.71
SMPD3-209ENST00000567223 PAPPAQ13219 1627 aa25.71■■□□□ 1.71
SMPD3-209ENST00000567223 ANO8Q9HCE9 1232 aaPredicted RBP25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms