RNA–Protein interactions for RNA: ENST00000566779.1

GTF3C1-206, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-206ENST00000566779 USP47Q96K76 1375 aa14.23□□□□□ -0.13
GTF3C1-206ENST00000566779 TTC21BQ7Z4L5 1316 aa14.23□□□□□ -0.13
GTF3C1-206ENST00000566779 ST20-MTHFSA0A0A6YYL1 179 aa14.23□□□□□ -0.13
GTF3C1-206ENST00000566779 GCP02774 474 aa14.23□□□□□ -0.13
GTF3C1-206ENST00000566779 KRT27Q7Z3Y8 459 aa14.23□□□□□ -0.13
GTF3C1-206ENST00000566779 ABCB7O75027 752 aa14.22□□□□□ -0.13
GTF3C1-206ENST00000566779 FAM182BQ5T319 152 aa14.22□□□□□ -0.13
GTF3C1-206ENST00000566779 HDGFL2Q7Z4V5 671 aaPredicted RBP14.22□□□□□ -0.13
GTF3C1-206ENST00000566779 COL18A1P39060 1754 aa14.22□□□□□ -0.13
GTF3C1-206ENST00000566779 SF3B2Q13435 895 aaKnown RBP14.21□□□□□ -0.13
GTF3C1-206ENST00000566779 LARP1Q6PKG0 1096 aaKnown RBP14.21□□□□□ -0.13
GTF3C1-206ENST00000566779 ZNF692Q9BU19 519 aaPredicted RBP14.21□□□□□ -0.13
GTF3C1-206ENST00000566779 SLC12A5Q9H2X9 1139 aa14.21□□□□□ -0.13
GTF3C1-206ENST00000566779 CPSF1Q10570 1443 aaKnown RBP14.21□□□□□ -0.13
GTF3C1-206ENST00000566779 CPDO75976 1380 aa14.21□□□□□ -0.14
GTF3C1-206ENST00000566779 KIF20BQ96Q89 1820 aa14.2□□□□□ -0.14
GTF3C1-206ENST00000566779 SPATA31A1Q5TZJ5 1347 aa14.2□□□□□ -0.14
GTF3C1-206ENST00000566779 TTC21AQ8NDW8 1320 aa14.2□□□□□ -0.14
GTF3C1-206ENST00000566779 COL5A2P05997 1499 aaPredicted RBP14.2□□□□□ -0.14
GTF3C1-206ENST00000566779 CD163L1Q9NR16 1453 aa14.2□□□□□ -0.14
GTF3C1-206ENST00000566779 ZRANB1Q9UGI0 708 aa14.2□□□□□ -0.14
GTF3C1-206ENST00000566779 A0A1W2PP64 1363 aa14.2□□□□□ -0.14
GTF3C1-206ENST00000566779 USP54Q70EL1 1684 aa14.2□□□□□ -0.14
GTF3C1-206ENST00000566779 TNS1Q9HBL0 1735 aaKnown RBP14.19□□□□□ -0.14
GTF3C1-206ENST00000566779 BLMP54132 1417 aaPredicted RBP14.19□□□□□ -0.14
GTF3C1-206ENST00000566779 NME9Q86XW9 330 aa14.19□□□□□ -0.14
GTF3C1-206ENST00000566779 NFAT5O94916 1531 aa14.19□□□□□ -0.14
GTF3C1-206ENST00000566779 CSB-PGBD3P0DP91 1061 aa14.18□□□□□ -0.14
GTF3C1-206ENST00000566779 TERF2IPQ9NYB0 399 aa14.18□□□□□ -0.14
GTF3C1-206ENST00000566779 PARP4Q9UKK3 1724 aaKnown RBP14.18□□□□□ -0.14
GTF3C1-206ENST00000566779 MYOM1P52179 1685 aa14.17□□□□□ -0.14
GTF3C1-206ENST00000566779 LRRC37A3O60309 1634 aa14.17□□□□□ -0.14
GTF3C1-206ENST00000566779 DEFB132Q7Z7B7 95 aa14.17□□□□□ -0.14
GTF3C1-206ENST00000566779 EDC4Q6P2E9 1401 aaKnown RBP14.16□□□□□ -0.14
GTF3C1-206ENST00000566779 EP400Q96L91 3159 aa14.16□□□□□ -0.14
GTF3C1-206ENST00000566779 TOM1L2Q6ZVM7 507 aa14.16□□□□□ -0.14
GTF3C1-206ENST00000566779 KCNH5Q8NCM2 988 aa14.16□□□□□ -0.14
GTF3C1-206ENST00000566779 TESK2Q96S53 571 aa14.16□□□□□ -0.14
GTF3C1-206ENST00000566779 POLR3GLQ9BT43 218 aa14.16□□□□□ -0.14
GTF3C1-206ENST00000566779 KAT6BQ8WYB5 2073 aa14.16□□□□□ -0.14
GTF3C1-206ENST00000566779 CRB1P82279 1406 aa14.15□□□□□ -0.14
GTF3C1-206ENST00000566779 AATKQ6ZMQ8 1374 aa14.15□□□□□ -0.14
GTF3C1-206ENST00000566779 ONECUT3O60422 494 aaPredicted RBP14.15□□□□□ -0.14
GTF3C1-206ENST00000566779 TMF1P82094 1093 aa14.15□□□□□ -0.14
GTF3C1-206ENST00000566779 POTEDQ86YR6 584 aa14.15□□□□□ -0.14
GTF3C1-206ENST00000566779 IFNLR1Q8IU57 520 aaPredicted RBP14.15□□□□□ -0.14
GTF3C1-206ENST00000566779 TCP11L2Q8N4U5 519 aa14.15□□□□□ -0.14
GTF3C1-206ENST00000566779 CCDC125Q86Z20 511 aa14.14□□□□□ -0.15
GTF3C1-206ENST00000566779 CLSPNQ9HAW4 1339 aa14.14□□□□□ -0.15
GTF3C1-206ENST00000566779 PDE3BQ13370 1112 aa14.13□□□□□ -0.15
GTF3C1-206ENST00000566779 NINLQ9Y2I6 1382 aa14.12□□□□□ -0.15
GTF3C1-206ENST00000566779 RGPD2P0DJD1 1756 aa14.12□□□□□ -0.15
GTF3C1-206ENST00000566779 AXIN2Q9Y2T1 843 aa14.12□□□□□ -0.15
GTF3C1-206ENST00000566779 SBF2Q86WG5 1849 aa14.12□□□□□ -0.15
GTF3C1-206ENST00000566779 BAG6P46379 1132 aa14.11□□□□□ -0.15
GTF3C1-206ENST00000566779 ARHGEF25Q86VW2 580 aa14.11□□□□□ -0.15
GTF3C1-206ENST00000566779 WDR17Q8IZU2 1322 aa14.11□□□□□ -0.15
GTF3C1-206ENST00000566779 OVOS2A0A0J9YW53 1432 aa14.1□□□□□ -0.15
GTF3C1-206ENST00000566779 OVOS2Q6IE36 1432 aa14.1□□□□□ -0.15
GTF3C1-206ENST00000566779 TRIM37O94972 964 aa14.1□□□□□ -0.15
GTF3C1-206ENST00000566779 BARGINQ6ZT62 677 aa14.1□□□□□ -0.15
GTF3C1-206ENST00000566779 ABCC6O95255 1503 aa14.1□□□□□ -0.15
GTF3C1-206ENST00000566779 USP31Q70CQ4 1352 aa14.09□□□□□ -0.15
GTF3C1-206ENST00000566779 ANKRD36BQ8N2N9 1353 aa14.09□□□□□ -0.15
GTF3C1-206ENST00000566779 LTV1Q96GA3 475 aaPredicted RBP14.09□□□□□ -0.15
GTF3C1-206ENST00000566779 TIMELESSQ9UNS1 1208 aa14.09□□□□□ -0.15
GTF3C1-206ENST00000566779 FAM208AQ9UK61 1670 aaKnown RBP14.09□□□□□ -0.15
GTF3C1-206ENST00000566779 EN1Q05925 392 aaPredicted RBP14.08□□□□□ -0.16
GTF3C1-206ENST00000566779 CDCA8Q53HL2 280 aa14.08□□□□□ -0.16
GTF3C1-206ENST00000566779 FAM196AQ6ZSG2 479 aa14.08□□□□□ -0.16
GTF3C1-206ENST00000566779 COG3Q96JB2 828 aa14.08□□□□□ -0.16
GTF3C1-206ENST00000566779 PUS7Q96PZ0 661 aaKnown RBP14.08□□□□□ -0.16
GTF3C1-206ENST00000566779 NLRP2Q9NX02 1062 aa14.08□□□□□ -0.16
GTF3C1-206ENST00000566779 THRAP3Q9Y2W1 955 aaKnown RBP14.08□□□□□ -0.16
GTF3C1-206ENST00000566779 GGNBP2Q9H3C7 697 aa14.07□□□□□ -0.16
GTF3C1-206ENST00000566779 PEAK1Q9H792 1746 aa14.07□□□□□ -0.16
GTF3C1-206ENST00000566779 DDB1Q16531 1140 aa14.06□□□□□ -0.16
GTF3C1-206ENST00000566779 OVOS2A0A0G2JMS6 1433 aa14.06□□□□□ -0.16
GTF3C1-206ENST00000566779 NSD3Q9BZ95 1437 aa14.06□□□□□ -0.16
GTF3C1-206ENST00000566779 NUP188Q5SRE5 1749 aa14.05□□□□□ -0.16
GTF3C1-206ENST00000566779 PSDA5PKW4 1024 aaPredicted RBP14.05□□□□□ -0.16
GTF3C1-206ENST00000566779 ANKRD24Q8TF21 1146 aa14.05□□□□□ -0.16
GTF3C1-206ENST00000566779 RREB1Q92766 1687 aa14.04□□□□□ -0.16
GTF3C1-206ENST00000566779 APBA3O96018 575 aa14.04□□□□□ -0.16
GTF3C1-206ENST00000566779 FBLN1P23142 703 aa14.04□□□□□ -0.16
GTF3C1-206ENST00000566779 DSG3P32926 999 aa14.04□□□□□ -0.16
GTF3C1-206ENST00000566779 AMPHP49418 695 aa14.04□□□□□ -0.16
GTF3C1-206ENST00000566779 ERBB3P21860 1342 aa14.04□□□□□ -0.16
GTF3C1-206ENST00000566779 ANKRD26Q9UPS8 1709 aa14.04□□□□□ -0.16
GTF3C1-206ENST00000566779 MAP2P11137 1827 aaKnown RBP14.04□□□□□ -0.16
GTF3C1-206ENST00000566779 HSPA5P11021 654 aaKnown RBP14.03□□□□□ -0.16
GTF3C1-206ENST00000566779 EIF4G2P78344 907 aaKnown RBP eCLIP14.03□□□□□ -0.16
GTF3C1-206ENST00000566779 CARD10Q9BWT7 1032 aa14.03□□□□□ -0.16
GTF3C1-206ENST00000566779 CCDC7Q96M83 1385 aa14.03□□□□□ -0.16
GTF3C1-206ENST00000566779 MAP3K19Q56UN5 1328 aa14.02□□□□□ -0.17
GTF3C1-206ENST00000566779 RRS1Q15050 365 aaKnown RBP14.02□□□□□ -0.17
GTF3C1-206ENST00000566779 EZH2Q15910 746 aaKnown RBP14.02□□□□□ -0.17
GTF3C1-206ENST00000566779 TNS2Q63HR2 1409 aa14.01□□□□□ -0.17
GTF3C1-206ENST00000566779 DISP2A7MBM2 1401 aa14□□□□□ -0.17
GTF3C1-206ENST00000566779 CDCA7Q9BWT1 371 aaPredicted RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms