RNA–Protein interactions for RNA: ENST00000566279.5

TCF4-231, Transcript of transcription factor 4, human

TSL 5 BASIC

Gene TCF4, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-231	ENST00000566279	CDCA7L	Q96GN5	454 aa		13.42	□□□□□ -0.26
TCF4-231	ENST00000566279	GC	P02774	474 aa		13.42	□□□□□ -0.26
TCF4-231	ENST00000566279	CHRNA2	Q15822	529 aa		13.42	□□□□□ -0.26
TCF4-231	ENST00000566279	PPP4R2	Q9NY27	417 aa		13.42	□□□□□ -0.26
TCF4-231	ENST00000566279	ANKRD26	Q9UPS8	1709 aa		13.42	□□□□□ -0.26
TCF4-231	ENST00000566279	KIAA0232	Q92628	1395 aa		13.41	□□□□□ -0.26
TCF4-231	ENST00000566279	TNNT2	P45379	298 aa	Predicted RBP	13.41	□□□□□ -0.26
TCF4-231	ENST00000566279	NFAT5	O94916	1531 aa		13.41	□□□□□ -0.26
TCF4-231	ENST00000566279	USP31	Q70CQ4	1352 aa		13.41	□□□□□ -0.26
TCF4-231	ENST00000566279	LTN1	O94822	1766 aa		13.41	□□□□□ -0.26
TCF4-231	ENST00000566279	PLCH1	Q4KWH8	1693 aa		13.4	□□□□□ -0.26
TCF4-231	ENST00000566279	COG3	Q96JB2	828 aa		13.4	□□□□□ -0.26
TCF4-231	ENST00000566279	ZNF521	Q96K83	1311 aa		13.39	□□□□□ -0.27
TCF4-231	ENST00000566279	RGPD5	Q99666	1765 aa		13.39	□□□□□ -0.27
TCF4-231	ENST00000566279	FAM83G	A6ND36	823 aa		13.39	□□□□□ -0.27
TCF4-231	ENST00000566279	CCDC146	Q8IYE0	955 aa		13.39	□□□□□ -0.27
TCF4-231	ENST00000566279	RRS1	Q15050	365 aa	Known RBP	13.38	□□□□□ -0.27
TCF4-231	ENST00000566279	PRDM11	Q9NQV5	511 aa		13.38	□□□□□ -0.27
TCF4-231	ENST00000566279	RCAN3	Q9UKA8	241 aa		13.38	□□□□□ -0.27
TCF4-231	ENST00000566279	NGLY1	Q96IV0	654 aa		13.37	□□□□□ -0.27
TCF4-231	ENST00000566279	TSHZ2	Q9NRE2	1034 aa		13.37	□□□□□ -0.27
TCF4-231	ENST00000566279	MTHFS	P49914	203 aa		13.36	□□□□□ -0.27
TCF4-231	ENST00000566279	AFF2	P51816	1311 aa		13.36	□□□□□ -0.27
TCF4-231	ENST00000566279	PEAK1	Q9H792	1746 aa		13.36	□□□□□ -0.27
TCF4-231	ENST00000566279	COL14A1	Q05707	1796 aa	Known RBP	13.36	□□□□□ -0.27
TCF4-231	ENST00000566279	RRP1	P56182	461 aa	Known RBP	13.36	□□□□□ -0.27
TCF4-231	ENST00000566279	LMO7	Q8WWI1	1683 aa		13.35	□□□□□ -0.27
TCF4-231	ENST00000566279	COL18A1	P39060	1754 aa		13.35	□□□□□ -0.27
TCF4-231	ENST00000566279	MAP2	P11137	1827 aa	Known RBP	13.35	□□□□□ -0.27
TCF4-231	ENST00000566279	APAF1	O14727	1248 aa		13.35	□□□□□ -0.27
TCF4-231	ENST00000566279	KCNH5	Q8NCM2	988 aa		13.35	□□□□□ -0.27
TCF4-231	ENST00000566279	RGS17	Q9UGC6	210 aa	Predicted RBP	13.35	□□□□□ -0.27
TCF4-231	ENST00000566279	AXIN2	Q9Y2T1	843 aa		13.35	□□□□□ -0.27
TCF4-231	ENST00000566279	CAMTA1	Q9Y6Y1	1673 aa		13.35	□□□□□ -0.27
TCF4-231	ENST00000566279	NRAP	Q86VF7	1730 aa		13.34	□□□□□ -0.27
TCF4-231	ENST00000566279	PHF23	Q9BUL5	403 aa	Predicted RBP	13.34	□□□□□ -0.27
TCF4-231	ENST00000566279	BTG4	Q9NY30	223 aa		13.34	□□□□□ -0.27
TCF4-231	ENST00000566279	EMILIN1	Q9Y6C2	1016 aa		13.34	□□□□□ -0.27
TCF4-231	ENST00000566279	MAP3K19	Q56UN5	1328 aa		13.34	□□□□□ -0.27
TCF4-231	ENST00000566279	ARHGEF25	Q86VW2	580 aa		13.34	□□□□□ -0.27
TCF4-231	ENST00000566279	CPD	O75976	1380 aa		13.34	□□□□□ -0.27
TCF4-231	ENST00000566279	BCL9L	Q86UU0	1499 aa		13.33	□□□□□ -0.27
TCF4-231	ENST00000566279	SLIT2	O94813	1529 aa		13.33	□□□□□ -0.27
TCF4-231	ENST00000566279	PPM1G	O15355	546 aa	Predicted RBP	13.33	□□□□□ -0.28
TCF4-231	ENST00000566279	B4GALNT3	Q6L9W6	998 aa		13.33	□□□□□ -0.28
TCF4-231	ENST00000566279	CFAP53	Q96M91	514 aa		13.33	□□□□□ -0.28
TCF4-231	ENST00000566279	GOLGA2	Q08379	1002 aa		13.33	□□□□□ -0.28
TCF4-231	ENST00000566279	DUSP27	Q5VZP5	1158 aa		13.33	□□□□□ -0.28
TCF4-231	ENST00000566279	STRN4	Q9NRL3	753 aa		13.33	□□□□□ -0.28
TCF4-231	ENST00000566279	USP21	Q9UK80	565 aa		13.33	□□□□□ -0.28
TCF4-231	ENST00000566279	COL3A1	P02461	1466 aa	Predicted RBP	13.32	□□□□□ -0.28
TCF4-231	ENST00000566279	NWD2	Q9ULI1	1742 aa		13.32	□□□□□ -0.28
TCF4-231	ENST00000566279	NGEF	Q8N5V2	710 aa		13.31	□□□□□ -0.28
TCF4-231	ENST00000566279	SLFN5	Q08AF3	891 aa		13.31	□□□□□ -0.28
TCF4-231	ENST00000566279	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.31	□□□□□ -0.28
TCF4-231	ENST00000566279	TRMT2A	Q8IZ69	625 aa	Known RBP	13.3	□□□□□ -0.28
TCF4-231	ENST00000566279	LTV1	Q96GA3	475 aa	Predicted RBP	13.3	□□□□□ -0.28
TCF4-231	ENST00000566279	COL5A2	P05997	1499 aa	Predicted RBP	13.3	□□□□□ -0.28
TCF4-231	ENST00000566279	AMPH	P49418	695 aa		13.3	□□□□□ -0.28
TCF4-231	ENST00000566279	POTEA	Q6S8J7	498 aa		13.3	□□□□□ -0.28
TCF4-231	ENST00000566279	POLK	Q9UBT6	870 aa		13.3	□□□□□ -0.28
TCF4-231	ENST00000566279	RGPD2	P0DJD1	1756 aa		13.3	□□□□□ -0.28
TCF4-231	ENST00000566279	AATK	Q6ZMQ8	1374 aa		13.29	□□□□□ -0.28
TCF4-231	ENST00000566279	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.29	□□□□□ -0.28
TCF4-231	ENST00000566279	HOXC9	P31274	260 aa		13.29	□□□□□ -0.28
TCF4-231	ENST00000566279	HSP90AB2P	Q58FF8	381 aa		13.29	□□□□□ -0.28
TCF4-231	ENST00000566279	RUNDC1	Q96C34	613 aa		13.29	□□□□□ -0.28
TCF4-231	ENST00000566279	USP35	Q9P2H5	1018 aa		13.29	□□□□□ -0.28
TCF4-231	ENST00000566279	LARP1	Q6PKG0	1096 aa	Known RBP	13.28	□□□□□ -0.28
TCF4-231	ENST00000566279	UNC5CL	Q8IV45	518 aa		13.28	□□□□□ -0.28
TCF4-231	ENST00000566279	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.28	□□□□□ -0.28
TCF4-231	ENST00000566279	CCDC9	Q9Y3X0	531 aa	Known RBP	13.28	□□□□□ -0.28
TCF4-231	ENST00000566279	EVA1C	P58658	441 aa		13.27	□□□□□ -0.29
TCF4-231	ENST00000566279	QTRT2	Q9H974	415 aa	Known RBP	13.27	□□□□□ -0.29
TCF4-231	ENST00000566279	GLI3	P10071	1580 aa		13.26	□□□□□ -0.29
TCF4-231	ENST00000566279		E9PSI1	815 aa		13.26	□□□□□ -0.29
TCF4-231	ENST00000566279	WWC1	Q8IX03	1113 aa		13.26	□□□□□ -0.29
TCF4-231	ENST00000566279	ANKRD24	Q8TF21	1146 aa		13.26	□□□□□ -0.29
TCF4-231	ENST00000566279	IP6K1	Q92551	441 aa		13.26	□□□□□ -0.29
TCF4-231	ENST00000566279	ATRN	O75882	1429 aa		13.25	□□□□□ -0.29
TCF4-231	ENST00000566279	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.25	□□□□□ -0.29
TCF4-231	ENST00000566279	CSB-PGBD3	P0DP91	1061 aa		13.25	□□□□□ -0.29
TCF4-231	ENST00000566279	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.25	□□□□□ -0.29
TCF4-231	ENST00000566279	TCP11L2	Q8N4U5	519 aa		13.25	□□□□□ -0.29
TCF4-231	ENST00000566279	EXOC6	Q8TAG9	804 aa		13.25	□□□□□ -0.29
TCF4-231	ENST00000566279	FLT4	P35916	1363 aa		13.25	□□□□□ -0.29
TCF4-231	ENST00000566279	ERBB3	P21860	1342 aa		13.25	□□□□□ -0.29
TCF4-231	ENST00000566279	ZNF772	Q68DY9	489 aa	Predicted RBP	13.25	□□□□□ -0.29
TCF4-231	ENST00000566279	PLIN1	O60240	522 aa		13.24	□□□□□ -0.29
TCF4-231	ENST00000566279	CCDC136	Q96JN2	1154 aa		13.24	□□□□□ -0.29
TCF4-231	ENST00000566279	ABCC6	O95255	1503 aa		13.24	□□□□□ -0.29
TCF4-231	ENST00000566279	TOM1L2	Q6ZVM7	507 aa		13.24	□□□□□ -0.29
TCF4-231	ENST00000566279	USHBP1	Q8N6Y0	703 aa		13.24	□□□□□ -0.29
TCF4-231	ENST00000566279	TRPC5	Q9UL62	973 aa	Predicted RBP	13.24	□□□□□ -0.29
TCF4-231	ENST00000566279	RRP7A	Q9Y3A4	280 aa	Known RBP	13.24	□□□□□ -0.29
TCF4-231	ENST00000566279	RTL1	A6NKG5	1358 aa		13.24	□□□□□ -0.29
TCF4-231	ENST00000566279	WDR17	Q8IZU2	1322 aa		13.23	□□□□□ -0.29
TCF4-231	ENST00000566279	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.23	□□□□□ -0.29
TCF4-231	ENST00000566279	VPS72	Q15906	364 aa		13.22	□□□□□ -0.29
TCF4-231	ENST00000566279	CCDC27	Q2M243	656 aa		13.22	□□□□□ -0.29

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