RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 CABP1Q9NZU7 370 aa24.06■■□□□ 1.44
CLN3-217ENST00000565354 PEAK1Q9H792 1746 aa24.06■■□□□ 1.44
CLN3-217ENST00000565354 GCP02774 474 aa24.05■■□□□ 1.44
CLN3-217ENST00000565354 NLRP13Q86W25 1043 aa24.05■■□□□ 1.44
CLN3-217ENST00000565354 CDCA8Q53HL2 280 aa24.04■■□□□ 1.44
CLN3-217ENST00000565354 TMC1Q8TDI8 760 aa24.04■■□□□ 1.44
CLN3-217ENST00000565354 OVOS2A0A0G2JMS6 1433 aa24.03■■□□□ 1.44
CLN3-217ENST00000565354 OVOS2A0A0J9YW53 1432 aa24.03■■□□□ 1.44
CLN3-217ENST00000565354 OVOS2Q6IE36 1432 aa24.03■■□□□ 1.44
CLN3-217ENST00000565354 DCAF8L1A6NGE4 600 aa24.03■■□□□ 1.44
CLN3-217ENST00000565354 CRB1P82279 1406 aa24.02■■□□□ 1.44
CLN3-217ENST00000565354 PUS7Q96PZ0 661 aaKnown RBP24.02■■□□□ 1.44
CLN3-217ENST00000565354 LRRC37A3O60309 1634 aa24■■□□□ 1.43
CLN3-217ENST00000565354 PLSCR1O15162 318 aa24■■□□□ 1.43
CLN3-217ENST00000565354 CASZ1Q86V15 1759 aa23.99■■□□□ 1.43
CLN3-217ENST00000565354 POLR3GLQ9BT43 218 aa23.98■■□□□ 1.43
CLN3-217ENST00000565354 BRD4O60885 1362 aaPredicted RBP23.98■■□□□ 1.43
CLN3-217ENST00000565354 ZEB1P37275 1124 aaPredicted RBP23.97■■□□□ 1.43
CLN3-217ENST00000565354 AATKQ6ZMQ8 1374 aa23.96■■□□□ 1.43
CLN3-217ENST00000565354 WNK3Q9BYP7 1800 aa23.96■■□□□ 1.43
CLN3-217ENST00000565354 DDB1Q16531 1140 aa23.95■■□□□ 1.42
CLN3-217ENST00000565354 HDGFL2Q7Z4V5 671 aaPredicted RBP23.95■■□□□ 1.42
CLN3-217ENST00000565354 ZNF692Q9BU19 519 aaPredicted RBP23.95■■□□□ 1.42
CLN3-217ENST00000565354 ANO8Q9HCE9 1232 aaPredicted RBP23.95■■□□□ 1.42
CLN3-217ENST00000565354 SLIT3O75094 1523 aa23.94■■□□□ 1.42
CLN3-217ENST00000565354 COL18A1P39060 1754 aa23.94■■□□□ 1.42
CLN3-217ENST00000565354 ZBTB7CA1YPR0 619 aa23.94■■□□□ 1.42
CLN3-217ENST00000565354 BCL11BQ9C0K0 894 aaPredicted RBP23.94■■□□□ 1.42
CLN3-217ENST00000565354 SLC12A5Q9H2X9 1139 aa23.93■■□□□ 1.42
CLN3-217ENST00000565354 TERF2IPQ9NYB0 399 aa23.93■■□□□ 1.42
CLN3-217ENST00000565354 AKAP12Q02952 1782 aa23.93■■□□□ 1.42
CLN3-217ENST00000565354 KTN1Q86UP2 1357 aaKnown RBP23.92■■□□□ 1.42
CLN3-217ENST00000565354 NLRP6P59044 892 aa23.92■■□□□ 1.42
CLN3-217ENST00000565354 TOM1L2Q6ZVM7 507 aa23.92■■□□□ 1.42
CLN3-217ENST00000565354 USP6P35125 1406 aa23.92■■□□□ 1.42
CLN3-217ENST00000565354 PTF1AQ7RTS3 328 aa23.91■■□□□ 1.42
CLN3-217ENST00000565354 UTRNP46939 3433 aa23.9■■□□□ 1.42
CLN3-217ENST00000565354 PROM2Q8N271 834 aa23.89■■□□□ 1.41
CLN3-217ENST00000565354 PDGFDQ9GZP0 370 aaPredicted RBP23.89■■□□□ 1.41
CLN3-217ENST00000565354 BCL9O00512 1426 aa23.89■■□□□ 1.41
CLN3-217ENST00000565354 PIK3C2AO00443 1686 aa23.89■■□□□ 1.41
CLN3-217ENST00000565354 MYOM1P52179 1685 aa23.89■■□□□ 1.41
CLN3-217ENST00000565354 CPSF1Q10570 1443 aaKnown RBP23.88■■□□□ 1.41
CLN3-217ENST00000565354 MARCH10Q8NA82 808 aaPredicted RBP23.88■■□□□ 1.41
CLN3-217ENST00000565354 WDR17Q8IZU2 1322 aa23.87■■□□□ 1.41
CLN3-217ENST00000565354 CDCA7Q9BWT1 371 aaPredicted RBP23.87■■□□□ 1.41
CLN3-217ENST00000565354 RGPD5Q99666 1765 aa23.87■■□□□ 1.41
CLN3-217ENST00000565354 ZBTB7AO95365 584 aa23.86■■□□□ 1.41
CLN3-217ENST00000565354 AXIN2Q9Y2T1 843 aa23.86■■□□□ 1.41
CLN3-217ENST00000565354 MON2Q7Z3U7 1717 aa23.86■■□□□ 1.41
CLN3-217ENST00000565354 PTGER2P43116 358 aa23.85■■□□□ 1.41
CLN3-217ENST00000565354 A0A1W2PP64 1363 aa23.85■■□□□ 1.41
CLN3-217ENST00000565354 TTC21BQ7Z4L5 1316 aa23.84■■□□□ 1.41
CLN3-217ENST00000565354 CD163L1Q9NR16 1453 aa23.84■■□□□ 1.41
CLN3-217ENST00000565354 ANKRD36BQ8N2N9 1353 aa23.84■■□□□ 1.41
CLN3-217ENST00000565354 TTC21AQ8NDW8 1320 aa23.84■■□□□ 1.41
CLN3-217ENST00000565354 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.83■■□□□ 1.41
CLN3-217ENST00000565354 STK32BQ9NY57 414 aa23.82■■□□□ 1.4
CLN3-217ENST00000565354 ATF5Q9Y2D1 282 aaPredicted RBP23.82■■□□□ 1.4
CLN3-217ENST00000565354 CHD4Q14839 1912 aa23.81■■□□□ 1.4
CLN3-217ENST00000565354 TXNRD1Q16881 649 aa23.81■■□□□ 1.4
CLN3-217ENST00000565354 ARHGEF25Q86VW2 580 aa23.81■■□□□ 1.4
CLN3-217ENST00000565354 EDC4Q6P2E9 1401 aaKnown RBP23.81■■□□□ 1.4
CLN3-217ENST00000565354 ZNF784Q8NCA9 323 aaPredicted RBP23.8■■□□□ 1.4
CLN3-217ENST00000565354 CARD10Q9BWT7 1032 aa23.8■■□□□ 1.4
CLN3-217ENST00000565354 SLC15A2Q16348 729 aa23.79■■□□□ 1.4
CLN3-217ENST00000565354 KCNH5Q8NCM2 988 aa23.78■■□□□ 1.4
CLN3-217ENST00000565354 EXOC5O00471 708 aa23.77■■□□□ 1.4
CLN3-217ENST00000565354 CSB-PGBD3P0DP91 1061 aa23.77■■□□□ 1.4
CLN3-217ENST00000565354 SYT17Q9BSW7 474 aa23.77■■□□□ 1.4
CLN3-217ENST00000565354 FHDC1Q9C0D6 1143 aaPredicted RBP23.77■■□□□ 1.4
CLN3-217ENST00000565354 KIF7Q2M1P5 1343 aa23.77■■□□□ 1.4
CLN3-217ENST00000565354 MTFR1LQ9H019 292 aa23.76■■□□□ 1.39
CLN3-217ENST00000565354 NHSQ6T4R5 1651 aa23.75■■□□□ 1.39
CLN3-217ENST00000565354 NME9Q86XW9 330 aa23.74■■□□□ 1.39
CLN3-217ENST00000565354 CCDC7Q96M83 1385 aa23.74■■□□□ 1.39
CLN3-217ENST00000565354 TNS2Q63HR2 1409 aa23.74■■□□□ 1.39
CLN3-217ENST00000565354 NFAT5O94916 1531 aa23.74■■□□□ 1.39
CLN3-217ENST00000565354 SOX12O15370 315 aa23.73■■□□□ 1.39
CLN3-217ENST00000565354 SGIP1Q9BQI5 828 aa23.73■■□□□ 1.39
CLN3-217ENST00000565354 ABCC6O95255 1503 aa23.72■■□□□ 1.39
CLN3-217ENST00000565354 KAT6BQ8WYB5 2073 aa23.71■■□□□ 1.39
CLN3-217ENST00000565354 NSD3Q9BZ95 1437 aa23.71■■□□□ 1.39
CLN3-217ENST00000565354 PANK3Q9H999 370 aa23.69■■□□□ 1.38
CLN3-217ENST00000565354 PAPPAQ13219 1627 aa23.69■■□□□ 1.38
CLN3-217ENST00000565354 USP31Q70CQ4 1352 aa23.68■■□□□ 1.38
CLN3-217ENST00000565354 COG3Q96JB2 828 aa23.68■■□□□ 1.38
CLN3-217ENST00000565354 BTAF1O14981 1849 aa23.68■■□□□ 1.38
CLN3-217ENST00000565354 WASHC2AQ641Q2 1341 aa23.67■■□□□ 1.38
CLN3-217ENST00000565354 ARXQ96QS3 562 aa23.67■■□□□ 1.38
CLN3-217ENST00000565354 ACSBG1Q96GR2 724 aa23.66■■□□□ 1.38
CLN3-217ENST00000565354 CARD14Q9BXL6 1004 aa23.66■■□□□ 1.38
CLN3-217ENST00000565354 KIF20BQ96Q89 1820 aa23.66■■□□□ 1.38
CLN3-217ENST00000565354 MAP3K5Q99683 1374 aa23.65■■□□□ 1.38
CLN3-217ENST00000565354 CGNL1Q0VF96 1302 aa23.64■■□□□ 1.38
CLN3-217ENST00000565354 USP54Q70EL1 1684 aa23.64■■□□□ 1.38
CLN3-217ENST00000565354 GGNBP2Q9H3C7 697 aa23.64■■□□□ 1.37
CLN3-217ENST00000565354 LTN1O94822 1766 aa23.63■■□□□ 1.37
CLN3-217ENST00000565354 SENP3-EIF4A1A0A087X0R7 540 aa23.62■■□□□ 1.37
CLN3-217ENST00000565354 FYB1O15117 783 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms