RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 HDGFL2Q7Z4V5 671 aaPredicted RBP20.98■□□□□ 0.95
CLN3-213ENST00000565047 TERF2IPQ9NYB0 399 aa20.97■□□□□ 0.95
CLN3-213ENST00000565047 WDR17Q8IZU2 1322 aa20.97■□□□□ 0.95
CLN3-213ENST00000565047 OVOS2A0A0J9YW53 1432 aa20.95■□□□□ 0.95
CLN3-213ENST00000565047 DISP2A7MBM2 1401 aa20.95■□□□□ 0.95
CLN3-213ENST00000565047 OVOS2Q6IE36 1432 aa20.95■□□□□ 0.95
CLN3-213ENST00000565047 PARP4Q9UKK3 1724 aaKnown RBP20.95■□□□□ 0.94
CLN3-213ENST00000565047 ABCC6O95255 1503 aa20.95■□□□□ 0.94
CLN3-213ENST00000565047 ZBTB7CA1YPR0 619 aa20.95■□□□□ 0.94
CLN3-213ENST00000565047 RGPD5Q99666 1765 aa20.95■□□□□ 0.94
CLN3-213ENST00000565047 SOX12O15370 315 aa20.94■□□□□ 0.94
CLN3-213ENST00000565047 SF3B2Q13435 895 aaKnown RBP20.94■□□□□ 0.94
CLN3-213ENST00000565047 FAM196AQ6ZSG2 479 aa20.94■□□□□ 0.94
CLN3-213ENST00000565047 TNS1Q9HBL0 1735 aaKnown RBP20.94■□□□□ 0.94
CLN3-213ENST00000565047 RGPD1P0DJD0 1748 aa20.93■□□□□ 0.94
CLN3-213ENST00000565047 TMF1P82094 1093 aa20.91■□□□□ 0.94
CLN3-213ENST00000565047 PDE3BQ13370 1112 aa20.91■□□□□ 0.94
CLN3-213ENST00000565047 TOM1L2Q6ZVM7 507 aa20.91■□□□□ 0.94
CLN3-213ENST00000565047 ANKRD36BQ8N2N9 1353 aa20.91■□□□□ 0.94
CLN3-213ENST00000565047 CARD10Q9BWT7 1032 aa20.91■□□□□ 0.94
CLN3-213ENST00000565047 BAG6P46379 1132 aa20.9■□□□□ 0.94
CLN3-213ENST00000565047 EN1Q05925 392 aaPredicted RBP20.9■□□□□ 0.94
CLN3-213ENST00000565047 PEAK1Q9H792 1746 aa20.9■□□□□ 0.94
CLN3-213ENST00000565047 LRRC37A3O60309 1634 aa20.89■□□□□ 0.93
CLN3-213ENST00000565047 TRIM37O94972 964 aa20.88■□□□□ 0.93
CLN3-213ENST00000565047 CAMKK2Q96RR4 588 aa20.88■□□□□ 0.93
CLN3-213ENST00000565047 ERBB3P21860 1342 aa20.87■□□□□ 0.93
CLN3-213ENST00000565047 WNK3Q9BYP7 1800 aa20.87■□□□□ 0.93
CLN3-213ENST00000565047 LTN1O94822 1766 aa20.85■□□□□ 0.93
CLN3-213ENST00000565047 CDCA7Q9BWT1 371 aaPredicted RBP20.85■□□□□ 0.93
CLN3-213ENST00000565047 FYB1O15117 783 aa20.84■□□□□ 0.93
CLN3-213ENST00000565047 EZH2Q15910 746 aaKnown RBP20.84■□□□□ 0.93
CLN3-213ENST00000565047 BCL9O00512 1426 aa20.84■□□□□ 0.93
CLN3-213ENST00000565047 DDB1Q16531 1140 aa20.83■□□□□ 0.93
CLN3-213ENST00000565047 MARCH10Q8NA82 808 aaPredicted RBP20.83■□□□□ 0.93
CLN3-213ENST00000565047 CCDC7Q96M83 1385 aa20.83■□□□□ 0.92
CLN3-213ENST00000565047 OVOS2A0A0G2JMS6 1433 aa20.82■□□□□ 0.92
CLN3-213ENST00000565047 APBA3O96018 575 aa20.82■□□□□ 0.92
CLN3-213ENST00000565047 CSB-PGBD3P0DP91 1061 aa20.82■□□□□ 0.92
CLN3-213ENST00000565047 FBLN1P23142 703 aa20.82■□□□□ 0.92
CLN3-213ENST00000565047 CDCA8Q53HL2 280 aa20.82■□□□□ 0.92
CLN3-213ENST00000565047 IP6K1Q92551 441 aa20.82■□□□□ 0.92
CLN3-213ENST00000565047 CARD14Q9BXL6 1004 aa20.82■□□□□ 0.92
CLN3-213ENST00000565047 MYOM1P52179 1685 aa20.81■□□□□ 0.92
CLN3-213ENST00000565047 C11orf95C9JLR9 678 aaPredicted RBP20.81■□□□□ 0.92
CLN3-213ENST00000565047 ANKRD24Q8TF21 1146 aa20.81■□□□□ 0.92
CLN3-213ENST00000565047 MAP3K19Q56UN5 1328 aa20.8■□□□□ 0.92
CLN3-213ENST00000565047 CCER1Q8TC90 406 aaPredicted RBP20.8■□□□□ 0.92
CLN3-213ENST00000565047 COG3Q96JB2 828 aa20.8■□□□□ 0.92
CLN3-213ENST00000565047 PTF1AQ7RTS3 328 aa20.79■□□□□ 0.92
CLN3-213ENST00000565047 PARD3Q8TEW0 1356 aa20.79■□□□□ 0.92
CLN3-213ENST00000565047 SBF2Q86WG5 1849 aa20.78■□□□□ 0.92
CLN3-213ENST00000565047 GGNBP2Q9H3C7 697 aa20.77■□□□□ 0.92
CLN3-213ENST00000565047 RREB1Q92766 1687 aa20.77■□□□□ 0.91
CLN3-213ENST00000565047 EXOC5O00471 708 aa20.76■□□□□ 0.91
CLN3-213ENST00000565047 HOXC9P31274 260 aa20.76■□□□□ 0.91
CLN3-213ENST00000565047 NLRP2Q9NX02 1062 aa20.76■□□□□ 0.91
CLN3-213ENST00000565047 TNS2Q63HR2 1409 aa20.76■□□□□ 0.91
CLN3-213ENST00000565047 PSDA5PKW4 1024 aaPredicted RBP20.74■□□□□ 0.91
CLN3-213ENST00000565047 PLSCR1O15162 318 aa20.74■□□□□ 0.91
CLN3-213ENST00000565047 BCL11BQ9C0K0 894 aaPredicted RBP20.74■□□□□ 0.91
CLN3-213ENST00000565047 IL2RBP14784 551 aa20.73■□□□□ 0.91
CLN3-213ENST00000565047 HSPA5P11021 654 aaKnown RBP20.72■□□□□ 0.91
CLN3-213ENST00000565047 RRS1Q15050 365 aaKnown RBP20.72■□□□□ 0.91
CLN3-213ENST00000565047 NUP188Q5SRE5 1749 aa20.72■□□□□ 0.91
CLN3-213ENST00000565047 RTL1A6NKG5 1358 aa20.72■□□□□ 0.91
CLN3-213ENST00000565047 NSD3Q9BZ95 1437 aa20.71■□□□□ 0.91
CLN3-213ENST00000565047 EIF4G2P78344 907 aaKnown RBP eCLIP20.71■□□□□ 0.91
CLN3-213ENST00000565047 R3HDM1Q15032 1099 aaKnown RBP20.71■□□□□ 0.91
CLN3-213ENST00000565047 PROM2Q8N271 834 aa20.71■□□□□ 0.91
CLN3-213ENST00000565047 RGPD3A6NKT7 1758 aaPredicted RBP20.71■□□□□ 0.91
CLN3-213ENST00000565047 RGPD4Q7Z3J3 1758 aa20.71■□□□□ 0.91
CLN3-213ENST00000565047 FAM208AQ9UK61 1670 aaKnown RBP20.7■□□□□ 0.91
CLN3-213ENST00000565047 KIF20BQ96Q89 1820 aa20.69■□□□□ 0.9
CLN3-213ENST00000565047 LRP5O75197 1615 aa20.69■□□□□ 0.9
CLN3-213ENST00000565047 AMPHP49418 695 aa20.69■□□□□ 0.9
CLN3-213ENST00000565047 LTV1Q96GA3 475 aaPredicted RBP20.68■□□□□ 0.9
CLN3-213ENST00000565047 KCNQ2O43526 872 aa20.67■□□□□ 0.9
CLN3-213ENST00000565047 KIF24Q5T7B8 1368 aa20.66■□□□□ 0.9
CLN3-213ENST00000565047 RGPD2P0DJD1 1756 aa20.65■□□□□ 0.9
CLN3-213ENST00000565047 INSRP06213 1382 aa20.65■□□□□ 0.9
CLN3-213ENST00000565047 HSP90AB2PQ58FF8 381 aa20.65■□□□□ 0.9
CLN3-213ENST00000565047 NBPF6Q5VWK0 638 aa20.65■□□□□ 0.9
CLN3-213ENST00000565047 NBPF4Q96M43 638 aa20.65■□□□□ 0.9
CLN3-213ENST00000565047 NHSQ6T4R5 1651 aa20.64■□□□□ 0.89
CLN3-213ENST00000565047 MEGF6O75095 1541 aa20.63■□□□□ 0.89
CLN3-213ENST00000565047 FLT4P35916 1363 aa20.62■□□□□ 0.89
CLN3-213ENST00000565047 EMILIN1Q9Y6C2 1016 aa20.62■□□□□ 0.89
CLN3-213ENST00000565047 ANO8Q9HCE9 1232 aaPredicted RBP20.61■□□□□ 0.89
CLN3-213ENST00000565047 SHANK3Q9BYB0 1731 aa20.61■□□□□ 0.89
CLN3-213ENST00000565047 CGNL1Q0VF96 1302 aa20.6■□□□□ 0.89
CLN3-213ENST00000565047 NBPF14Q5TI25 921 aa20.6■□□□□ 0.89
CLN3-213ENST00000565047 ACSBG1Q96GR2 724 aa20.6■□□□□ 0.89
CLN3-213ENST00000565047 ANKRD26Q9UPS8 1709 aa20.6■□□□□ 0.89
CLN3-213ENST00000565047 NCAPD2Q15021 1401 aa20.59■□□□□ 0.89
CLN3-213ENST00000565047 TXNRD1Q16881 649 aa20.58■□□□□ 0.89
CLN3-213ENST00000565047 DDX54Q8TDD1 881 aaKnown RBP20.58■□□□□ 0.89
CLN3-213ENST00000565047 PANK3Q9H999 370 aa20.58■□□□□ 0.89
CLN3-213ENST00000565047 POLKQ9UBT6 870 aa20.58■□□□□ 0.89
CLN3-213ENST00000565047 WASHC2AQ641Q2 1341 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms