RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 POTEAQ6S8J7 498 aa14.39□□□□□ -0.11
TPM1-229ENST00000561242 RAPGEF4Q8WZA2 1011 aa14.39□□□□□ -0.11
TPM1-229ENST00000561242 EXOC5O00471 708 aa14.38□□□□□ -0.11
TPM1-229ENST00000561242 AMER1Q5JTC6 1135 aaPredicted RBP14.38□□□□□ -0.11
TPM1-229ENST00000561242 WDR17Q8IZU2 1322 aa14.38□□□□□ -0.11
TPM1-229ENST00000561242 COL22A1Q8NFW1 1626 aaPredicted RBP14.37□□□□□ -0.11
TPM1-229ENST00000561242 FLT4P35916 1363 aa14.37□□□□□ -0.11
TPM1-229ENST00000561242 KIF24Q5T7B8 1368 aa14.37□□□□□ -0.11
TPM1-229ENST00000561242 PER1O15534 1290 aaPredicted RBP14.37□□□□□ -0.11
TPM1-229ENST00000561242 CARD10Q9BWT7 1032 aa14.37□□□□□ -0.11
TPM1-229ENST00000561242 RTL1A6NKG5 1358 aa14.36□□□□□ -0.11
TPM1-229ENST00000561242 TATP17735 454 aaPredicted RBP14.36□□□□□ -0.11
TPM1-229ENST00000561242 FBLN1P23142 703 aa14.36□□□□□ -0.11
TPM1-229ENST00000561242 MTHFSP49914 203 aa14.36□□□□□ -0.11
TPM1-229ENST00000561242 SEPT12Q8IYM1 358 aa14.36□□□□□ -0.11
TPM1-229ENST00000561242 POLKQ9UBT6 870 aa14.36□□□□□ -0.11
TPM1-229ENST00000561242 EMILIN1Q9Y6C2 1016 aa14.36□□□□□ -0.11
TPM1-229ENST00000561242 SPATA31A5Q5VU36 1347 aa14.36□□□□□ -0.11
TPM1-229ENST00000561242 SPATA31A7Q8IWB4 1347 aa14.36□□□□□ -0.11
TPM1-229ENST00000561242 OVOS2A0A0J9YW53 1432 aa14.35□□□□□ -0.11
TPM1-229ENST00000561242 BLMP54132 1417 aaPredicted RBP14.35□□□□□ -0.11
TPM1-229ENST00000561242 OVOS2Q6IE36 1432 aa14.35□□□□□ -0.11
TPM1-229ENST00000561242 DDB1Q16531 1140 aa14.35□□□□□ -0.11
TPM1-229ENST00000561242 RGS17Q9UGC6 210 aaPredicted RBP14.35□□□□□ -0.11
TPM1-229ENST00000561242 AXIN2Q9Y2T1 843 aa14.35□□□□□ -0.11
TPM1-229ENST00000561242 TRPM3Q9HCF6 1732 aaPredicted RBP14.35□□□□□ -0.11
TPM1-229ENST00000561242 NPC1L1Q9UHC9 1359 aa14.34□□□□□ -0.11
TPM1-229ENST00000561242 U2SURPO15042 1029 aaKnown RBP14.34□□□□□ -0.11
TPM1-229ENST00000561242 DIAPH1O60610 1272 aaKnown RBP14.34□□□□□ -0.11
TPM1-229ENST00000561242 IL2RBP14784 551 aa14.34□□□□□ -0.11
TPM1-229ENST00000561242 HSP90AB2PQ58FF8 381 aa14.34□□□□□ -0.11
TPM1-229ENST00000561242 PNNQ9H307 717 aaKnown RBP14.34□□□□□ -0.11
TPM1-229ENST00000561242 SPATA31A1Q5TZJ5 1347 aa14.34□□□□□ -0.11
TPM1-229ENST00000561242 CRB1P82279 1406 aa14.33□□□□□ -0.11
TPM1-229ENST00000561242 SLIT3O75094 1523 aa14.33□□□□□ -0.12
TPM1-229ENST00000561242 SLIT2O94813 1529 aa14.33□□□□□ -0.12
TPM1-229ENST00000561242 BARGINQ6ZT62 677 aa14.33□□□□□ -0.12
TPM1-229ENST00000561242 KRT27Q7Z3Y8 459 aa14.33□□□□□ -0.12
TPM1-229ENST00000561242 ERBB3P21860 1342 aa14.33□□□□□ -0.12
TPM1-229ENST00000561242 ALS2Q96Q42 1657 aa14.33□□□□□ -0.12
TPM1-229ENST00000561242 BCL9LQ86UU0 1499 aa14.32□□□□□ -0.12
TPM1-229ENST00000561242 AKAP12Q02952 1782 aa14.32□□□□□ -0.12
TPM1-229ENST00000561242 INSRP06213 1382 aa14.32□□□□□ -0.12
TPM1-229ENST00000561242 ATRNO75882 1429 aa14.32□□□□□ -0.12
TPM1-229ENST00000561242 SPG7Q9UQ90 795 aa14.31□□□□□ -0.12
TPM1-229ENST00000561242 MON2Q7Z3U7 1717 aa14.31□□□□□ -0.12
TPM1-229ENST00000561242 COL14A1Q05707 1796 aaKnown RBP14.31□□□□□ -0.12
TPM1-229ENST00000561242 WDR43Q15061 677 aaKnown RBP eCLIP14.29□□□□□ -0.12
TPM1-229ENST00000561242 DDX54Q8TDD1 881 aaKnown RBP14.29□□□□□ -0.12
TPM1-229ENST00000561242 PIK3C2AO00443 1686 aa14.29□□□□□ -0.12
TPM1-229ENST00000561242 COL5A2P05997 1499 aaPredicted RBP14.28□□□□□ -0.12
TPM1-229ENST00000561242 PPP2R1AP30153 589 aa14.28□□□□□ -0.12
TPM1-229ENST00000561242 PLEKHO1Q53GL0 409 aaPredicted RBP14.28□□□□□ -0.12
TPM1-229ENST00000561242 FAM196AQ6ZSG2 479 aa14.28□□□□□ -0.12
TPM1-229ENST00000561242 NRKQ7Z2Y5 1582 aa14.27□□□□□ -0.12
TPM1-229ENST00000561242 MYBBP1AQ9BQG0 1328 aaKnown RBP14.27□□□□□ -0.12
TPM1-229ENST00000561242 U2AF1L5P0DN76 240 aaPredicted RBP14.27□□□□□ -0.13
TPM1-229ENST00000561242 U2AF1Q01081 240 aaKnown RBP eCLIP14.27□□□□□ -0.136e-9■■■■□ 21.7
TPM1-229ENST00000561242 EIF4A2Q14240 407 aaKnown RBP14.27□□□□□ -0.13
TPM1-229ENST00000561242 ZCRB1Q8TBF4 217 aaKnown RBP14.27□□□□□ -0.13
TPM1-229ENST00000561242 ONECUT3O60422 494 aaPredicted RBP14.26□□□□□ -0.13
TPM1-229ENST00000561242 AMOTQ4VCS5 1084 aa14.26□□□□□ -0.13
TPM1-229ENST00000561242 C1orf141Q5JVX7 400 aa14.26□□□□□ -0.13
TPM1-229ENST00000561242 NBPF6Q5VWK0 638 aa14.26□□□□□ -0.13
TPM1-229ENST00000561242 CCDC125Q86Z20 511 aa14.26□□□□□ -0.13
TPM1-229ENST00000561242 USHBP1Q8N6Y0 703 aa14.26□□□□□ -0.13
TPM1-229ENST00000561242 NBPF4Q96M43 638 aa14.26□□□□□ -0.13
TPM1-229ENST00000561242 SULT6B1Q6IMI4 303 aa14.25□□□□□ -0.13
TPM1-229ENST00000561242 CAMTA1Q9Y6Y1 1673 aa14.25□□□□□ -0.13
TPM1-229ENST00000561242 PHRF1Q9P1Y6 1649 aaKnown RBP14.24□□□□□ -0.13
TPM1-229ENST00000561242 HSP90AB1P08238 724 aaKnown RBP14.24□□□□□ -0.13
TPM1-229ENST00000561242 EYA1Q99502 592 aa14.24□□□□□ -0.13
TPM1-229ENST00000561242 NFAT5O94916 1531 aa14.24□□□□□ -0.13
TPM1-229ENST00000561242 ABCC6O95255 1503 aa14.24□□□□□ -0.13
TPM1-229ENST00000561242 CDK12Q9NYV4 1490 aaPredicted RBP14.24□□□□□ -0.13
TPM1-229ENST00000561242 HMGB2P26583 209 aaKnown RBP14.23□□□□□ -0.13
TPM1-229ENST00000561242 MYOM1P52179 1685 aa14.23□□□□□ -0.13
TPM1-229ENST00000561242 MAPK8IP3Q9UPT6 1336 aa14.22□□□□□ -0.13
TPM1-229ENST00000561242 ILDR2Q71H61 639 aa14.22□□□□□ -0.13
TPM1-229ENST00000561242 SYTL4Q96C24 671 aaPredicted RBP14.22□□□□□ -0.13
TPM1-229ENST00000561242 PRKRIP1Q9H875 184 aaPredicted RBP14.22□□□□□ -0.13
TPM1-229ENST00000561242 HMOX1P09601 288 aa14.21□□□□□ -0.13
TPM1-229ENST00000561242 IL13P35225 146 aa14.21□□□□□ -0.13
TPM1-229ENST00000561242 KIF20BQ96Q89 1820 aa14.2□□□□□ -0.14
TPM1-229ENST00000561242 PCDH11XQ9BZA7 1347 aa14.2□□□□□ -0.14
TPM1-229ENST00000561242 PCDH11YQ9BZA8 1340 aa14.2□□□□□ -0.14
TPM1-229ENST00000561242 BAG6P46379 1132 aa14.2□□□□□ -0.14
TPM1-229ENST00000561242 IFNL2Q8IZJ0 200 aa14.2□□□□□ -0.14
TPM1-229ENST00000561242 RTF1Q92541 710 aaKnown RBP14.2□□□□□ -0.14
TPM1-229ENST00000561242 NWD2Q9ULI1 1742 aa14.2□□□□□ -0.14
TPM1-229ENST00000561242 SOCS7O14512 581 aa14.19□□□□□ -0.14
TPM1-229ENST00000561242 DIEXFQ68CQ4 756 aaKnown RBP14.19□□□□□ -0.14
TPM1-229ENST00000561242 GAS2L2Q8NHY3 880 aa14.19□□□□□ -0.14
TPM1-229ENST00000561242 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.19□□□□□ -0.141e-8■■■■□ 23.7
TPM1-229ENST00000561242 FCHSD2O94868 740 aa14.18□□□□□ -0.14
TPM1-229ENST00000561242 ZNF530Q6P9A1 599 aaPredicted RBP14.18□□□□□ -0.14
TPM1-229ENST00000561242 MRS2Q9HD23 443 aa14.18□□□□□ -0.14
TPM1-229ENST00000561242 PARD3Q8TEW0 1356 aa14.18□□□□□ -0.14
TPM1-229ENST00000561242 OVOS2A0A0G2JMS6 1433 aa14.17□□□□□ -0.14
TPM1-229ENST00000561242 RGS12O14924 1447 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms