RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 MON2Q7Z3U7 1717 aa19.95■□□□□ 0.78
LDLR-213ENST00000560502 NFAT5O94916 1531 aa19.93■□□□□ 0.78
LDLR-213ENST00000560502 C11orf95C9JLR9 678 aaPredicted RBP19.93■□□□□ 0.78
LDLR-213ENST00000560502 USP54Q70EL1 1684 aa19.93■□□□□ 0.78
LDLR-213ENST00000560502 SIN3AQ96ST3 1273 aa19.92■□□□□ 0.78
LDLR-213ENST00000560502 TTC21BQ7Z4L5 1316 aa19.92■□□□□ 0.78
LDLR-213ENST00000560502 WDR17Q8IZU2 1322 aa19.92■□□□□ 0.78
LDLR-213ENST00000560502 ROCK2O75116 1388 aaKnown RBP19.92■□□□□ 0.78
LDLR-213ENST00000560502 ABCC6O95255 1503 aa19.92■□□□□ 0.78
LDLR-213ENST00000560502 ZBTB7CA1YPR0 619 aa19.91■□□□□ 0.78
LDLR-213ENST00000560502 AXIN2Q9Y2T1 843 aa19.91■□□□□ 0.78
LDLR-213ENST00000560502 ARHGEF25Q86VW2 580 aa19.9■□□□□ 0.78
LDLR-213ENST00000560502 ZNF692Q9BU19 519 aaPredicted RBP19.9■□□□□ 0.78
LDLR-213ENST00000560502 BCL9O00512 1426 aa19.9■□□□□ 0.78
LDLR-213ENST00000560502 NBPF14Q5TI25 921 aa19.89■□□□□ 0.77
LDLR-213ENST00000560502 TOM1L2Q6ZVM7 507 aa19.89■□□□□ 0.77
LDLR-213ENST00000560502 TTC21AQ8NDW8 1320 aa19.89■□□□□ 0.77
LDLR-213ENST00000560502 SBNO2Q9Y2G9 1366 aa19.88■□□□□ 0.77
LDLR-213ENST00000560502 DDB1Q16531 1140 aa19.88■□□□□ 0.77
LDLR-213ENST00000560502 TIMELESSQ9UNS1 1208 aa19.88■□□□□ 0.77
LDLR-213ENST00000560502 CASZ1Q86V15 1759 aa19.88■□□□□ 0.77
LDLR-213ENST00000560502 KCNH5Q8NCM2 988 aa19.87■□□□□ 0.77
LDLR-213ENST00000560502 PLSCR1O15162 318 aa19.86■□□□□ 0.77
LDLR-213ENST00000560502 KTN1Q86UP2 1357 aaKnown RBP19.85■□□□□ 0.77
LDLR-213ENST00000560502 CDCA7Q9BWT1 371 aaPredicted RBP19.85■□□□□ 0.77
LDLR-213ENST00000560502 CARD10Q9BWT7 1032 aa19.85■□□□□ 0.77
LDLR-213ENST00000560502 PTF1AQ7RTS3 328 aa19.84■□□□□ 0.77
LDLR-213ENST00000560502 MARCH10Q8NA82 808 aaPredicted RBP19.84■□□□□ 0.77
LDLR-213ENST00000560502 CD163L1Q9NR16 1453 aa19.84■□□□□ 0.77
LDLR-213ENST00000560502 USP31Q70CQ4 1352 aa19.83■□□□□ 0.77
LDLR-213ENST00000560502 LTN1O94822 1766 aa19.83■□□□□ 0.77
LDLR-213ENST00000560502 NEUROD1Q13562 356 aa19.83■□□□□ 0.77
LDLR-213ENST00000560502 BCL11BQ9C0K0 894 aaPredicted RBP19.83■□□□□ 0.77
LDLR-213ENST00000560502 CCDC7Q96M83 1385 aa19.82■□□□□ 0.76
LDLR-213ENST00000560502 ANO8Q9HCE9 1232 aaPredicted RBP19.81■□□□□ 0.76
LDLR-213ENST00000560502 TNS2Q63HR2 1409 aa19.81■□□□□ 0.76
LDLR-213ENST00000560502 NHSQ6T4R5 1651 aa19.81■□□□□ 0.76
LDLR-213ENST00000560502 SOX12O15370 315 aa19.8■□□□□ 0.76
LDLR-213ENST00000560502 SPON1Q9HCB6 807 aa19.8■□□□□ 0.76
LDLR-213ENST00000560502 KCNQ2O43526 872 aa19.79■□□□□ 0.76
LDLR-213ENST00000560502 PROM2Q8N271 834 aa19.79■□□□□ 0.76
LDLR-213ENST00000560502 CSB-PGBD3P0DP91 1061 aa19.78■□□□□ 0.76
LDLR-213ENST00000560502 NINLQ9Y2I6 1382 aa19.78■□□□□ 0.76
LDLR-213ENST00000560502 ERBB3P21860 1342 aa19.76■□□□□ 0.75
LDLR-213ENST00000560502 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.75■□□□□ 0.75
LDLR-213ENST00000560502 EXOC5O00471 708 aa19.74■□□□□ 0.75
LDLR-213ENST00000560502 NME9Q86XW9 330 aa19.74■□□□□ 0.75
LDLR-213ENST00000560502 CARD11Q9BXL7 1154 aa19.74■□□□□ 0.75
LDLR-213ENST00000560502 EDC4Q6P2E9 1401 aaKnown RBP19.74■□□□□ 0.75
LDLR-213ENST00000560502 MYOM1P52179 1685 aa19.74■□□□□ 0.75
LDLR-213ENST00000560502 PAPPAQ13219 1627 aa19.73■□□□□ 0.75
LDLR-213ENST00000560502 PDGFDQ9GZP0 370 aaPredicted RBP19.73■□□□□ 0.75
LDLR-213ENST00000560502 PPP1R1BQ9UD71 204 aaPredicted RBP19.73■□□□□ 0.75
LDLR-213ENST00000560502 BTAF1O14981 1849 aa19.72■□□□□ 0.75
LDLR-213ENST00000560502 TXNRD1Q16881 649 aa19.72■□□□□ 0.75
LDLR-213ENST00000560502 FAM208AQ9UK61 1670 aaKnown RBP19.71■□□□□ 0.75
LDLR-213ENST00000560502 A0A1W2PP64 1363 aa19.7■□□□□ 0.74
LDLR-213ENST00000560502 TONSLQ96HA7 1378 aa19.7■□□□□ 0.74
LDLR-213ENST00000560502 SLC12A5Q9H2X9 1139 aa19.7■□□□□ 0.74
LDLR-213ENST00000560502 HDGFL2Q7Z4V5 671 aaPredicted RBP19.69■□□□□ 0.74
LDLR-213ENST00000560502 PUS7Q96PZ0 661 aaKnown RBP19.69■□□□□ 0.74
LDLR-213ENST00000560502 TMC1Q8TDI8 760 aa19.68■□□□□ 0.74
LDLR-213ENST00000560502 NLRP2Q9NX02 1062 aa19.68■□□□□ 0.74
LDLR-213ENST00000560502 IL2RBP14784 551 aa19.67■□□□□ 0.74
LDLR-213ENST00000560502 PTGER2P43116 358 aa19.67■□□□□ 0.74
LDLR-213ENST00000560502 SLC15A2Q16348 729 aa19.67■□□□□ 0.74
LDLR-213ENST00000560502 ANKRD24Q8TF21 1146 aa19.67■□□□□ 0.74
LDLR-213ENST00000560502 STK32BQ9NY57 414 aa19.67■□□□□ 0.74
LDLR-213ENST00000560502 YY1P25490 414 aa19.66■□□□□ 0.74
LDLR-213ENST00000560502 TERF2IPQ9NYB0 399 aa19.66■□□□□ 0.74
LDLR-213ENST00000560502 KAT6BQ8WYB5 2073 aa19.65■□□□□ 0.74
LDLR-213ENST00000560502 ZBTB7AO95365 584 aa19.65■□□□□ 0.74
LDLR-213ENST00000560502 ACSBG1Q96GR2 724 aa19.64■□□□□ 0.73
LDLR-213ENST00000560502 TESK2Q96S53 571 aa19.64■□□□□ 0.73
LDLR-213ENST00000560502 QSER1Q2KHR3 1735 aa19.63■□□□□ 0.73
LDLR-213ENST00000560502 SHANK3Q9BYB0 1731 aa19.63■□□□□ 0.73
LDLR-213ENST00000560502 IP6K1Q92551 441 aa19.62■□□□□ 0.73
LDLR-213ENST00000560502 SGIP1Q9BQI5 828 aa19.62■□□□□ 0.73
LDLR-213ENST00000560502 RGPD2P0DJD1 1756 aa19.62■□□□□ 0.73
LDLR-213ENST00000560502 ATF5Q9Y2D1 282 aaPredicted RBP19.61■□□□□ 0.73
LDLR-213ENST00000560502 DOT1LQ8TEK3 1739 aa19.6■□□□□ 0.73
LDLR-213ENST00000560502 MTFR1LQ9H019 292 aa19.6■□□□□ 0.73
LDLR-213ENST00000560502 COL24A1Q17RW2 1714 aa19.59■□□□□ 0.73
LDLR-213ENST00000560502 DCAF8L1A6NGE4 600 aa19.59■□□□□ 0.73
LDLR-213ENST00000560502 TUBGCP6Q96RT7 1819 aa19.58■□□□□ 0.73
LDLR-213ENST00000560502 MAP3K19Q56UN5 1328 aa19.57■□□□□ 0.72
LDLR-213ENST00000560502 LY75O60449 1722 aa19.57■□□□□ 0.72
LDLR-213ENST00000560502 ST20-MTHFSA0A0A6YYL1 179 aa19.56■□□□□ 0.72
LDLR-213ENST00000560502 ZNF827Q17R98 1081 aa19.56■□□□□ 0.72
LDLR-213ENST00000560502 LRRC4BQ9NT99 713 aa19.56■□□□□ 0.72
LDLR-213ENST00000560502 ANKRD36BQ8N2N9 1353 aa19.56■□□□□ 0.72
LDLR-213ENST00000560502 HOXC9P31274 260 aa19.55■□□□□ 0.72
LDLR-213ENST00000560502 SYT17Q9BSW7 474 aa19.55■□□□□ 0.72
LDLR-213ENST00000560502 FHDC1Q9C0D6 1143 aaPredicted RBP19.55■□□□□ 0.72
LDLR-213ENST00000560502 MAP3K5Q99683 1374 aa19.55■□□□□ 0.72
LDLR-213ENST00000560502 CHD4Q14839 1912 aa19.55■□□□□ 0.72
LDLR-213ENST00000560502 LTV1Q96GA3 475 aaPredicted RBP19.54■□□□□ 0.72
LDLR-213ENST00000560502 COG3Q96JB2 828 aa19.54■□□□□ 0.72
LDLR-213ENST00000560502 MEGF6O75095 1541 aa19.54■□□□□ 0.72
LDLR-213ENST00000560502 RTL1A6NKG5 1358 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms