RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 PARD3Q8TEW0 1356 aa19.78■□□□□ 0.76
TPM1-223ENST00000560445 WDR17Q8IZU2 1322 aa19.77■□□□□ 0.76
TPM1-223ENST00000560445 ARHGEF25Q86VW2 580 aa19.77■□□□□ 0.76
TPM1-223ENST00000560445 NFAT5O94916 1531 aa19.76■□□□□ 0.75
TPM1-223ENST00000560445 ST20-MTHFSA0A0A6YYL1 179 aa19.75■□□□□ 0.75
TPM1-223ENST00000560445 CSB-PGBD3P0DP91 1061 aa19.75■□□□□ 0.75
TPM1-223ENST00000560445 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.75■□□□□ 0.75
TPM1-223ENST00000560445 COL18A1P39060 1754 aa19.75■□□□□ 0.75
TPM1-223ENST00000560445 TNS1Q9HBL0 1735 aaKnown RBP19.74■□□□□ 0.75
TPM1-223ENST00000560445 TMF1P82094 1093 aa19.74■□□□□ 0.75
TPM1-223ENST00000560445 CD163L1Q9NR16 1453 aa19.73■□□□□ 0.75
TPM1-223ENST00000560445 USP47Q96K76 1375 aa19.73■□□□□ 0.75
TPM1-223ENST00000560445 SOX12O15370 315 aa19.73■□□□□ 0.75
TPM1-223ENST00000560445 SLC12A5Q9H2X9 1139 aa19.73■□□□□ 0.75
TPM1-223ENST00000560445 OVOS2A0A0G2JMS6 1433 aa19.73■□□□□ 0.75
TPM1-223ENST00000560445 OVOS2A0A0J9YW53 1432 aa19.73■□□□□ 0.75
TPM1-223ENST00000560445 OVOS2Q6IE36 1432 aa19.73■□□□□ 0.75
TPM1-223ENST00000560445 A0A1W2PP64 1363 aa19.72■□□□□ 0.75
TPM1-223ENST00000560445 CCDC7Q96M83 1385 aa19.72■□□□□ 0.75
TPM1-223ENST00000560445 DDB1Q16531 1140 aa19.72■□□□□ 0.75
TPM1-223ENST00000560445 TESK2Q96S53 571 aa19.72■□□□□ 0.75
TPM1-223ENST00000560445 CARD10Q9BWT7 1032 aa19.71■□□□□ 0.75
TPM1-223ENST00000560445 WNK3Q9BYP7 1800 aa19.7■□□□□ 0.74
TPM1-223ENST00000560445 TRIM37O94972 964 aa19.7■□□□□ 0.74
TPM1-223ENST00000560445 FAM182BQ5T319 152 aa19.7■□□□□ 0.74
TPM1-223ENST00000560445 EN1Q05925 392 aaPredicted RBP19.69■□□□□ 0.74
TPM1-223ENST00000560445 NME9Q86XW9 330 aa19.69■□□□□ 0.74
TPM1-223ENST00000560445 LRRC37A3O60309 1634 aa19.69■□□□□ 0.74
TPM1-223ENST00000560445 APBA3O96018 575 aa19.68■□□□□ 0.74
TPM1-223ENST00000560445 ANKRD36BQ8N2N9 1353 aa19.68■□□□□ 0.74
TPM1-223ENST00000560445 LTN1O94822 1766 aa19.67■□□□□ 0.74
TPM1-223ENST00000560445 AXIN2Q9Y2T1 843 aa19.67■□□□□ 0.74
TPM1-223ENST00000560445 RGPD5Q99666 1765 aa19.66■□□□□ 0.74
TPM1-223ENST00000560445 COG3Q96JB2 828 aa19.66■□□□□ 0.74
TPM1-223ENST00000560445 PCGF6Q9BYE7 350 aa19.66■□□□□ 0.74
TPM1-223ENST00000560445 ERBB3P21860 1342 aa19.65■□□□□ 0.74
TPM1-223ENST00000560445 NBPF14Q5TI25 921 aa19.64■□□□□ 0.73
TPM1-223ENST00000560445 BCL9O00512 1426 aa19.64■□□□□ 0.73
TPM1-223ENST00000560445 FAM208AQ9UK61 1670 aaKnown RBP19.64■□□□□ 0.73
TPM1-223ENST00000560445 RGPD3A6NKT7 1758 aaPredicted RBP19.63■□□□□ 0.73
TPM1-223ENST00000560445 RGPD4Q7Z3J3 1758 aa19.63■□□□□ 0.73
TPM1-223ENST00000560445 LRP5O75197 1615 aa19.63■□□□□ 0.73
TPM1-223ENST00000560445 EXOC5O00471 708 aa19.63■□□□□ 0.73
TPM1-223ENST00000560445 CAMKK2Q96RR4 588 aa19.62■□□□□ 0.73
TPM1-223ENST00000560445 NLRP2Q9NX02 1062 aa19.62■□□□□ 0.73
TPM1-223ENST00000560445 PEAK1Q9H792 1746 aa19.62■□□□□ 0.73
TPM1-223ENST00000560445 TNS2Q63HR2 1409 aa19.61■□□□□ 0.73
TPM1-223ENST00000560445 EZH2Q15910 746 aaKnown RBP19.61■□□□□ 0.73
TPM1-223ENST00000560445 RREB1Q92766 1687 aa19.6■□□□□ 0.73
TPM1-223ENST00000560445 RTL1A6NKG5 1358 aa19.59■□□□□ 0.73
TPM1-223ENST00000560445 ANKRD24Q8TF21 1146 aa19.59■□□□□ 0.73
TPM1-223ENST00000560445 BCL11BQ9C0K0 894 aaPredicted RBP19.59■□□□□ 0.73
TPM1-223ENST00000560445 IL2RBP14784 551 aa19.58■□□□□ 0.72
TPM1-223ENST00000560445 IP6K1Q92551 441 aa19.58■□□□□ 0.72
TPM1-223ENST00000560445 SBF2Q86WG5 1849 aa19.58■□□□□ 0.72
TPM1-223ENST00000560445 PSDA5PKW4 1024 aaPredicted RBP19.57■□□□□ 0.72
TPM1-223ENST00000560445 AMPHP49418 695 aa19.57■□□□□ 0.72
TPM1-223ENST00000560445 CCER1Q8TC90 406 aaPredicted RBP19.57■□□□□ 0.72
TPM1-223ENST00000560445 SRCAPQ6ZRS2 3230 aa19.56■□□□□ 0.72
TPM1-223ENST00000560445 PLSCR1O15162 318 aa19.56■□□□□ 0.72
TPM1-223ENST00000560445 R3HDM1Q15032 1099 aaKnown RBP19.56■□□□□ 0.72
TPM1-223ENST00000560445 SMG6Q86US8 1419 aaKnown RBP19.56■□□□□ 0.72
TPM1-223ENST00000560445 NUP188Q5SRE5 1749 aa19.54■□□□□ 0.72
TPM1-223ENST00000560445 KIF20BQ96Q89 1820 aa19.54■□□□□ 0.72
TPM1-223ENST00000560445 MARCH10Q8NA82 808 aaPredicted RBP19.54■□□□□ 0.72
TPM1-223ENST00000560445 KIF24Q5T7B8 1368 aa19.54■□□□□ 0.72
TPM1-223ENST00000560445 MAP3K19Q56UN5 1328 aa19.52■□□□□ 0.72
TPM1-223ENST00000560445 HOXC9P31274 260 aa19.51■□□□□ 0.71
TPM1-223ENST00000560445 FYB1O15117 783 aa19.5■□□□□ 0.71
TPM1-223ENST00000560445 EIF4G2P78344 907 aaKnown RBP eCLIP19.5■□□□□ 0.71
TPM1-223ENST00000560445 NHSQ6T4R5 1651 aa19.49■□□□□ 0.71
TPM1-223ENST00000560445 MYOM1P52179 1685 aa19.49■□□□□ 0.71
TPM1-223ENST00000560445 CGNL1Q0VF96 1302 aa19.49■□□□□ 0.71
TPM1-223ENST00000560445 LTV1Q96GA3 475 aaPredicted RBP19.48■□□□□ 0.71
TPM1-223ENST00000560445 GGNBP2Q9H3C7 697 aa19.48■□□□□ 0.71
TPM1-223ENST00000560445 FLT4P35916 1363 aa19.47■□□□□ 0.71
TPM1-223ENST00000560445 NSD3Q9BZ95 1437 aa19.47■□□□□ 0.71
TPM1-223ENST00000560445 INSRP06213 1382 aa19.44■□□□□ 0.7
TPM1-223ENST00000560445 HMGB2P26583 209 aaKnown RBP19.43■□□□□ 0.7
TPM1-223ENST00000560445 RAPGEF4Q8WZA2 1011 aa19.43■□□□□ 0.7
TPM1-223ENST00000560445 RRS1Q15050 365 aaKnown RBP19.42■□□□□ 0.7
TPM1-223ENST00000560445 SPON1Q9HCB6 807 aa19.42■□□□□ 0.7
TPM1-223ENST00000560445 STK32BQ9NY57 414 aa19.42■□□□□ 0.7
TPM1-223ENST00000560445 KAT6BQ8WYB5 2073 aa19.41■□□□□ 0.7
TPM1-223ENST00000560445 TXNRD1Q16881 649 aa19.41■□□□□ 0.7
TPM1-223ENST00000560445 ZCRB1Q8TBF4 217 aaKnown RBP19.41■□□□□ 0.7
TPM1-223ENST00000560445 DDX54Q8TDD1 881 aaKnown RBP19.4■□□□□ 0.7
TPM1-223ENST00000560445 POLR3GLQ9BT43 218 aa19.4■□□□□ 0.7
TPM1-223ENST00000560445 PPP1R1BQ9UD71 204 aaPredicted RBP19.4■□□□□ 0.7
TPM1-223ENST00000560445 CARD14Q9BXL6 1004 aa19.39■□□□□ 0.69
TPM1-223ENST00000560445 BTAF1O14981 1849 aa19.39■□□□□ 0.69
TPM1-223ENST00000560445 NSD2O96028 1365 aa19.38■□□□□ 0.69
TPM1-223ENST00000560445 TATP17735 454 aaPredicted RBP19.38■□□□□ 0.69
TPM1-223ENST00000560445 ACSBG1Q96GR2 724 aa19.38■□□□□ 0.69
TPM1-223ENST00000560445 KCNQ2O43526 872 aa19.37■□□□□ 0.69
TPM1-223ENST00000560445 HSPA5P11021 654 aaKnown RBP19.37■□□□□ 0.69
TPM1-223ENST00000560445 SLC27A3Q5K4L6 730 aa19.37■□□□□ 0.69
TPM1-223ENST00000560445 ANKRD26Q9UPS8 1709 aa19.37■□□□□ 0.69
TPM1-223ENST00000560445 PCDH11XQ9BZA7 1347 aa19.36■□□□□ 0.69
TPM1-223ENST00000560445 PCDH11YQ9BZA8 1340 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms