RNA–Protein interactions for RNA: ENST00000559774.6

LRRC28-215, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 624 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-215ENST00000559774 PIAS4Q8N2W9 510 aaPredicted RBP11.71□□□□□ -0.53
LRRC28-215ENST00000559774 CFAP53Q96M91 514 aa11.71□□□□□ -0.53
LRRC28-215ENST00000559774 EMILIN1Q9Y6C2 1016 aa11.71□□□□□ -0.53
LRRC28-215ENST00000559774 COL14A1Q05707 1796 aaKnown RBP11.7□□□□□ -0.54
LRRC28-215ENST00000559774 PLEKHG5O94827 1062 aa11.7□□□□□ -0.54
LRRC28-215ENST00000559774 FBLN1P23142 703 aa11.7□□□□□ -0.54
LRRC28-215ENST00000559774 UNC5CLQ8IV45 518 aa11.7□□□□□ -0.54
LRRC28-215ENST00000559774 C8orf37Q96NL8 207 aa11.7□□□□□ -0.54
LRRC28-215ENST00000559774 BTG4Q9NY30 223 aa11.7□□□□□ -0.54
LRRC28-215ENST00000559774 ERBB3P21860 1342 aa11.69□□□□□ -0.54
LRRC28-215ENST00000559774 CHRNA2Q15822 529 aa11.69□□□□□ -0.54
LRRC28-215ENST00000559774 ZNF772Q68DY9 489 aaPredicted RBP11.69□□□□□ -0.54
LRRC28-215ENST00000559774 AXIN2Q9Y2T1 843 aa11.69□□□□□ -0.54
LRRC28-215ENST00000559774 LMO7Q8WWI1 1683 aa11.68□□□□□ -0.54
LRRC28-215ENST00000559774 PPM1GO15355 546 aaPredicted RBP11.68□□□□□ -0.54
LRRC28-215ENST00000559774 EVA1CP58658 441 aa11.68□□□□□ -0.54
LRRC28-215ENST00000559774 HSP90AB2PQ58FF8 381 aa11.68□□□□□ -0.54
LRRC28-215ENST00000559774 AFF2P51816 1311 aa11.67□□□□□ -0.54
LRRC28-215ENST00000559774 WDR17Q8IZU2 1322 aa11.67□□□□□ -0.54
LRRC28-215ENST00000559774 MSH5O43196 834 aa11.67□□□□□ -0.54
LRRC28-215ENST00000559774 CNGB1Q14028 1251 aaPredicted RBP11.67□□□□□ -0.54
LRRC28-215ENST00000559774 VPS72Q15906 364 aa11.67□□□□□ -0.54
LRRC28-215ENST00000559774 ANKRD24Q8TF21 1146 aa11.67□□□□□ -0.54
LRRC28-215ENST00000559774 USP21Q9UK80 565 aa11.67□□□□□ -0.54
LRRC28-215ENST00000559774 NUDCQ9Y266 331 aa11.67□□□□□ -0.54
LRRC28-215ENST00000559774 COL5A2P05997 1499 aaPredicted RBP11.67□□□□□ -0.54
LRRC28-215ENST00000559774 BCL9LQ86UU0 1499 aa11.67□□□□□ -0.54
LRRC28-215ENST00000559774 CAMTA1Q9Y6Y1 1673 aa11.67□□□□□ -0.54
LRRC28-215ENST00000559774 COL18A1P39060 1754 aa11.67□□□□□ -0.54
LRRC28-215ENST00000559774 NWD2Q9ULI1 1742 aa11.66□□□□□ -0.54
LRRC28-215ENST00000559774 ZBTB7CA1YPR0 619 aa11.66□□□□□ -0.54
LRRC28-215ENST00000559774 DIAPH1O60610 1272 aaKnown RBP11.66□□□□□ -0.54
LRRC28-215ENST00000559774 TRPC5Q9UL62 973 aaPredicted RBP11.66□□□□□ -0.54
LRRC28-215ENST00000559774 THRAP3Q9Y2W1 955 aaKnown RBP11.66□□□□□ -0.54
LRRC28-215ENST00000559774 PLEKHG2Q9H7P9 1386 aa11.66□□□□□ -0.54
LRRC28-215ENST00000559774 CCER2I3L3R5 266 aa11.65□□□□□ -0.54
LRRC28-215ENST00000559774 IL13P35225 146 aa11.65□□□□□ -0.54
LRRC28-215ENST00000559774 EIF4A2Q14240 407 aaKnown RBP11.65□□□□□ -0.54
LRRC28-215ENST00000559774 CARD10Q9BWT7 1032 aa11.65□□□□□ -0.54
LRRC28-215ENST00000559774 CRB1P82279 1406 aa11.65□□□□□ -0.54
LRRC28-215ENST00000559774 LTN1O94822 1766 aa11.64□□□□□ -0.55
LRRC28-215ENST00000559774 CSB-PGBD3P0DP91 1061 aa11.64□□□□□ -0.55
LRRC28-215ENST00000559774 CDCA7Q9BWT1 371 aaPredicted RBP11.64□□□□□ -0.55
LRRC28-215ENST00000559774 MAP2P11137 1827 aaKnown RBP11.64□□□□□ -0.55
LRRC28-215ENST00000559774 COL3A1P02461 1466 aaPredicted RBP11.63□□□□□ -0.55
LRRC28-215ENST00000559774 PEAK1Q9H792 1746 aa11.63□□□□□ -0.55
LRRC28-215ENST00000559774 SPATA31A5Q5VU36 1347 aa11.63□□□□□ -0.55
LRRC28-215ENST00000559774 SPATA31A7Q8IWB4 1347 aa11.63□□□□□ -0.55
LRRC28-215ENST00000559774 ATRNO75882 1429 aa11.63□□□□□ -0.55
LRRC28-215ENST00000559774 BARGINQ6ZT62 677 aa11.63□□□□□ -0.55
LRRC28-215ENST00000559774 TOM1L2Q6ZVM7 507 aa11.63□□□□□ -0.55
LRRC28-215ENST00000559774 QTRT2Q9H974 415 aaKnown RBP11.63□□□□□ -0.55
LRRC28-215ENST00000559774 STRN4Q9NRL3 753 aa11.63□□□□□ -0.55
LRRC28-215ENST00000559774 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.63□□□□□ -0.55
LRRC28-215ENST00000559774 SPATA31A1Q5TZJ5 1347 aa11.62□□□□□ -0.55
LRRC28-215ENST00000559774 IGSF1Q8N6C5 1336 aa11.62□□□□□ -0.55
LRRC28-215ENST00000559774 PLCH1Q4KWH8 1693 aa11.62□□□□□ -0.55
LRRC28-215ENST00000559774 NCAPD2Q15021 1401 aa11.62□□□□□ -0.55
LRRC28-215ENST00000559774 NBPF6Q5VWK0 638 aa11.62□□□□□ -0.55
LRRC28-215ENST00000559774 LARP1Q6PKG0 1096 aaKnown RBP11.62□□□□□ -0.55
LRRC28-215ENST00000559774 TCP11L2Q8N4U5 519 aa11.62□□□□□ -0.55
LRRC28-215ENST00000559774 GJD4Q96KN9 370 aaPredicted RBP11.62□□□□□ -0.55
LRRC28-215ENST00000559774 NBPF4Q96M43 638 aa11.62□□□□□ -0.55
LRRC28-215ENST00000559774 EYA1Q99502 592 aa11.62□□□□□ -0.55
LRRC28-215ENST00000559774 NLRP2Q9NX02 1062 aa11.62□□□□□ -0.55
LRRC28-215ENST00000559774 ONECUT3O60422 494 aaPredicted RBP11.61□□□□□ -0.55
LRRC28-215ENST00000559774 LTV1Q96GA3 475 aaPredicted RBP11.61□□□□□ -0.55
LRRC28-215ENST00000559774 PNNQ9H307 717 aaKnown RBP11.61□□□□□ -0.55
LRRC28-215ENST00000559774 KDRP35968 1356 aa11.61□□□□□ -0.55
LRRC28-215ENST00000559774 FAM208AQ9UK61 1670 aaKnown RBP11.61□□□□□ -0.55
LRRC28-215ENST00000559774 NRAPQ86VF7 1730 aa11.6□□□□□ -0.55
LRRC28-215ENST00000559774 FCHSD2O94868 740 aa11.6□□□□□ -0.55
LRRC28-215ENST00000559774 RBM6P78332 1123 aaKnown RBP11.6□□□□□ -0.55
LRRC28-215ENST00000559774 MRS2Q9HD23 443 aa11.59□□□□□ -0.55
LRRC28-215ENST00000559774 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.59□□□□□ -0.55
LRRC28-215ENST00000559774 RGS17Q9UGC6 210 aaPredicted RBP11.59□□□□□ -0.55
LRRC28-215ENST00000559774 U2SURPO15042 1029 aaKnown RBP11.58□□□□□ -0.56
LRRC28-215ENST00000559774 IL2RBP14784 551 aa11.58□□□□□ -0.56
LRRC28-215ENST00000559774 RXRBP28702 533 aa11.58□□□□□ -0.56
LRRC28-215ENST00000559774 WDR43Q15061 677 aaKnown RBP eCLIP11.58□□□□□ -0.56
LRRC28-215ENST00000559774 MIER1Q8N108 512 aa11.58□□□□□ -0.56
LRRC28-215ENST00000559774 PNISRQ8TF01 805 aaKnown RBP11.58□□□□□ -0.56
LRRC28-215ENST00000559774 RAPGEF4Q8WZA2 1011 aa11.58□□□□□ -0.56
LRRC28-215ENST00000559774 CCDC9Q9Y3X0 531 aaKnown RBP11.58□□□□□ -0.56
LRRC28-215ENST00000559774 U2AF1L5P0DN76 240 aaPredicted RBP11.57□□□□□ -0.56
LRRC28-215ENST00000559774 U2AF1Q01081 240 aaKnown RBP eCLIP11.57□□□□□ -0.56
LRRC28-215ENST00000559774 AMOTQ4VCS5 1084 aa11.57□□□□□ -0.56
LRRC28-215ENST00000559774 SULT6B1Q6IMI4 303 aa11.57□□□□□ -0.56
LRRC28-215ENST00000559774 DISP2A7MBM2 1401 aa11.56□□□□□ -0.56
LRRC28-215ENST00000559774 RGPD1P0DJD0 1748 aa11.56□□□□□ -0.56
LRRC28-215ENST00000559774 TATP17735 454 aaPredicted RBP11.56□□□□□ -0.56
LRRC28-215ENST00000559774 NEFMP07197 916 aa11.55□□□□□ -0.56
LRRC28-215ENST00000559774 RSPH6AQ9H0K4 717 aa11.55□□□□□ -0.56
LRRC28-215ENST00000559774 USP35Q9P2H5 1018 aa11.55□□□□□ -0.56
LRRC28-215ENST00000559774 RGPD5Q99666 1765 aa11.54□□□□□ -0.56
LRRC28-215ENST00000559774 EXOC5O00471 708 aa11.54□□□□□ -0.56
LRRC28-215ENST00000559774 FAM98CQ17RN3 349 aaKnown RBP11.54□□□□□ -0.56
LRRC28-215ENST00000559774 CCDC184Q52MB2 194 aa11.54□□□□□ -0.56
LRRC28-215ENST00000559774 PLEKHO1Q53GL0 409 aaPredicted RBP11.54□□□□□ -0.56
LRRC28-215ENST00000559774 POTEAQ6S8J7 498 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms