RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 USP35Q9P2H5 1018 aa13.47□□□□□ -0.25
SPG11-214ENST00000558989 A0A1W2PP64 1363 aa13.47□□□□□ -0.25
SPG11-214ENST00000558989 USP19O94966 1318 aa13.46□□□□□ -0.25
SPG11-214ENST00000558989 HSPA5P11021 654 aaKnown RBP13.46□□□□□ -0.26
SPG11-214ENST00000558989 TERF2IPQ9NYB0 399 aa13.46□□□□□ -0.26
SPG11-214ENST00000558989 CDK12Q9NYV4 1490 aaPredicted RBP13.45□□□□□ -0.26
SPG11-214ENST00000558989 EVA1CP58658 441 aa13.45□□□□□ -0.26
SPG11-214ENST00000558989 VPS72Q15906 364 aa13.45□□□□□ -0.26
SPG11-214ENST00000558989 BRD4O60885 1362 aaPredicted RBP13.44□□□□□ -0.26
SPG11-214ENST00000558989 EIF4G2P78344 907 aaKnown RBP eCLIP13.44□□□□□ -0.26
SPG11-214ENST00000558989 FAM98CQ17RN3 349 aaKnown RBP13.44□□□□□ -0.26
SPG11-214ENST00000558989 TTC21AQ8NDW8 1320 aa13.44□□□□□ -0.26
SPG11-214ENST00000558989 MYCNP04198 464 aaPredicted RBP13.43□□□□□ -0.26
SPG11-214ENST00000558989 LTN1O94822 1766 aa13.43□□□□□ -0.26
SPG11-214ENST00000558989 MYOM1P52179 1685 aa13.43□□□□□ -0.26
SPG11-214ENST00000558989 SLIT3O75094 1523 aa13.43□□□□□ -0.26
SPG11-214ENST00000558989 CAMTA1Q9Y6Y1 1673 aa13.43□□□□□ -0.26
SPG11-214ENST00000558989 SEPT12Q8IYM1 358 aa13.42□□□□□ -0.26
SPG11-214ENST00000558989 PIAS4Q8N2W9 510 aaPredicted RBP13.42□□□□□ -0.26
SPG11-214ENST00000558989 LARP1Q6PKG0 1096 aaKnown RBP13.41□□□□□ -0.26
SPG11-214ENST00000558989 SPRYD3Q8NCJ5 442 aa13.41□□□□□ -0.26
SPG11-214ENST00000558989 LMO7Q8WWI1 1683 aa13.41□□□□□ -0.26
SPG11-214ENST00000558989 EDC4Q6P2E9 1401 aaKnown RBP13.41□□□□□ -0.26
SPG11-214ENST00000558989 UPF1Q92900 1129 aaKnown RBP eCLIP13.41□□□□□ -0.26
SPG11-214ENST00000558989 PUS7Q96PZ0 661 aaKnown RBP13.41□□□□□ -0.26
SPG11-214ENST00000558989 VASPP50552 380 aaPredicted RBP13.4□□□□□ -0.26
SPG11-214ENST00000558989 CDCA8Q53HL2 280 aa13.4□□□□□ -0.26
SPG11-214ENST00000558989 COL18A1P39060 1754 aa13.4□□□□□ -0.26
SPG11-214ENST00000558989 KIF20BQ96Q89 1820 aa13.4□□□□□ -0.26
SPG11-214ENST00000558989 FBLN1P23142 703 aa13.39□□□□□ -0.27
SPG11-214ENST00000558989 FAM182BQ5T319 152 aa13.39□□□□□ -0.27
SPG11-214ENST00000558989 KCNH5Q8NCM2 988 aa13.39□□□□□ -0.27
SPG11-214ENST00000558989 SPATA31A5Q5VU36 1347 aa13.39□□□□□ -0.27
SPG11-214ENST00000558989 SPATA31A7Q8IWB4 1347 aa13.39□□□□□ -0.27
SPG11-214ENST00000558989 CPDO75976 1380 aa13.39□□□□□ -0.27
SPG11-214ENST00000558989 ANKRD36BQ8N2N9 1353 aa13.39□□□□□ -0.27
SPG11-214ENST00000558989 AXIN2Q9Y2T1 843 aa13.39□□□□□ -0.27
SPG11-214ENST00000558989 NINLQ9Y2I6 1382 aa13.38□□□□□ -0.27
SPG11-214ENST00000558989 SLC4A2P04920 1241 aa13.38□□□□□ -0.27
SPG11-214ENST00000558989 GGNBP2Q9H3C7 697 aa13.38□□□□□ -0.27
SPG11-214ENST00000558989 NFAT5O94916 1531 aa13.38□□□□□ -0.27
SPG11-214ENST00000558989 CSB-PGBD3P0DP91 1061 aa13.37□□□□□ -0.27
SPG11-214ENST00000558989 SPATA31A1Q5TZJ5 1347 aa13.37□□□□□ -0.27
SPG11-214ENST00000558989 COL5A2P05997 1499 aaPredicted RBP13.37□□□□□ -0.27
SPG11-214ENST00000558989 USP54Q70EL1 1684 aa13.37□□□□□ -0.27
SPG11-214ENST00000558989 TOM1L2Q6ZVM7 507 aa13.36□□□□□ -0.27
SPG11-214ENST00000558989 ARHGEF25Q86VW2 580 aa13.36□□□□□ -0.27
SPG11-214ENST00000558989 COG3Q96JB2 828 aa13.36□□□□□ -0.27
SPG11-214ENST00000558989 USP31Q70CQ4 1352 aa13.36□□□□□ -0.27
SPG11-214ENST00000558989 AATKQ6ZMQ8 1374 aa13.35□□□□□ -0.27
SPG11-214ENST00000558989 C11orf95C9JLR9 678 aaPredicted RBP13.35□□□□□ -0.27
SPG11-214ENST00000558989 KRT27Q7Z3Y8 459 aa13.35□□□□□ -0.27
SPG11-214ENST00000558989 IFNLR1Q8IU57 520 aaPredicted RBP13.35□□□□□ -0.27
SPG11-214ENST00000558989 KAT6BQ8WYB5 2073 aa13.35□□□□□ -0.27
SPG11-214ENST00000558989 OVOS2A0A0J9YW53 1432 aa13.35□□□□□ -0.27
SPG11-214ENST00000558989 OVOS2Q6IE36 1432 aa13.35□□□□□ -0.27
SPG11-214ENST00000558989 NSD3Q9BZ95 1437 aa13.35□□□□□ -0.27
SPG11-214ENST00000558989 LTV1Q96GA3 475 aaPredicted RBP13.34□□□□□ -0.27
SPG11-214ENST00000558989 CARD14Q9BXL6 1004 aa13.34□□□□□ -0.27
SPG11-214ENST00000558989 EP400Q96L91 3159 aa13.33□□□□□ -0.27
SPG11-214ENST00000558989 THSD7AQ9UPZ6 1657 aa13.33□□□□□ -0.28
SPG11-214ENST00000558989 FYB1O15117 783 aa13.33□□□□□ -0.28
SPG11-214ENST00000558989 ONECUT3O60422 494 aaPredicted RBP13.33□□□□□ -0.28
SPG11-214ENST00000558989 TCP11L2Q8N4U5 519 aa13.33□□□□□ -0.28
SPG11-214ENST00000558989 RGPD2P0DJD1 1756 aa13.33□□□□□ -0.28
SPG11-214ENST00000558989 CRB1P82279 1406 aa13.33□□□□□ -0.28
SPG11-214ENST00000558989 RRS1Q15050 365 aaKnown RBP13.32□□□□□ -0.28
SPG11-214ENST00000558989 WNK3Q9BYP7 1800 aa13.32□□□□□ -0.28
SPG11-214ENST00000558989 MAP2P11137 1827 aaKnown RBP13.31□□□□□ -0.28
SPG11-214ENST00000558989 WDR17Q8IZU2 1322 aa13.31□□□□□ -0.28
SPG11-214ENST00000558989 NLRP2Q9NX02 1062 aa13.31□□□□□ -0.28
SPG11-214ENST00000558989 AMPHP49418 695 aa13.3□□□□□ -0.28
SPG11-214ENST00000558989 PANK3Q9H999 370 aa13.3□□□□□ -0.28
SPG11-214ENST00000558989 TNNT2P45379 298 aaPredicted RBP13.29□□□□□ -0.28
SPG11-214ENST00000558989 PDE3BQ13370 1112 aa13.29□□□□□ -0.28
SPG11-214ENST00000558989 CNGB1Q14028 1251 aaPredicted RBP13.29□□□□□ -0.28
SPG11-214ENST00000558989 ANKRD24Q8TF21 1146 aa13.29□□□□□ -0.28
SPG11-214ENST00000558989 MAP3K19Q56UN5 1328 aa13.29□□□□□ -0.28
SPG11-214ENST00000558989 PPM1GO15355 546 aaPredicted RBP13.28□□□□□ -0.28
SPG11-214ENST00000558989 BARGINQ6ZT62 677 aa13.28□□□□□ -0.28
SPG11-214ENST00000558989 DEFB132Q7Z7B7 95 aa13.28□□□□□ -0.28
SPG11-214ENST00000558989 KIF7Q2M1P5 1343 aa13.28□□□□□ -0.28
SPG11-214ENST00000558989 PARP4Q9UKK3 1724 aaKnown RBP13.28□□□□□ -0.28
SPG11-214ENST00000558989 SF3B2Q13435 895 aaKnown RBP13.27□□□□□ -0.28
SPG11-214ENST00000558989 LRRC37A3O60309 1634 aa13.27□□□□□ -0.28
SPG11-214ENST00000558989 ERBB3P21860 1342 aa13.27□□□□□ -0.29
SPG11-214ENST00000558989 THRAP3Q9Y2W1 955 aaKnown RBP13.27□□□□□ -0.29
SPG11-214ENST00000558989 CGNL1Q0VF96 1302 aa13.26□□□□□ -0.29
SPG11-214ENST00000558989 PEAK1Q9H792 1746 aa13.26□□□□□ -0.29
SPG11-214ENST00000558989 ANKRD26Q9UPS8 1709 aa13.26□□□□□ -0.29
SPG11-214ENST00000558989 HOXC9P31274 260 aa13.26□□□□□ -0.29
SPG11-214ENST00000558989 IP6K1Q92551 441 aa13.26□□□□□ -0.29
SPG11-214ENST00000558989 DDB1Q16531 1140 aa13.25□□□□□ -0.29
SPG11-214ENST00000558989 CARD10Q9BWT7 1032 aa13.25□□□□□ -0.29
SPG11-214ENST00000558989 RNF216Q9NWF9 866 aaPredicted RBP13.25□□□□□ -0.29
SPG11-214ENST00000558989 EMILIN1Q9Y6C2 1016 aa13.25□□□□□ -0.29
SPG11-214ENST00000558989 RGPD1P0DJD0 1748 aa13.25□□□□□ -0.29
SPG11-214ENST00000558989 TRIM37O94972 964 aa13.25□□□□□ -0.29
SPG11-214ENST00000558989 BLMP54132 1417 aaPredicted RBP13.25□□□□□ -0.29
SPG11-214ENST00000558989 ABCC6O95255 1503 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms