RNA–Protein interactions for RNA: ENST00000558890.5

LRRC28-211, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 978 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-211ENST00000558890 USP21Q9UK80 565 aa10.36□□□□□ -0.75
LRRC28-211ENST00000558890 AXIN2Q9Y2T1 843 aa10.36□□□□□ -0.75
LRRC28-211ENST00000558890 KNSTRNQ9Y448 316 aa10.36□□□□□ -0.75
LRRC28-211ENST00000558890 KIF24Q5T7B8 1368 aa10.36□□□□□ -0.75
LRRC28-211ENST00000558890 KIAA0232Q92628 1395 aa10.36□□□□□ -0.75
LRRC28-211ENST00000558890 PLEKHG5O94827 1062 aa10.35□□□□□ -0.75
LRRC28-211ENST00000558890 CHRNA2Q15822 529 aa10.35□□□□□ -0.75
LRRC28-211ENST00000558890 PRKRIP1Q9H875 184 aaPredicted RBP10.35□□□□□ -0.75
LRRC28-211ENST00000558890 AATKQ6ZMQ8 1374 aa10.35□□□□□ -0.75
LRRC28-211ENST00000558890 FBLN1P23142 703 aa10.34□□□□□ -0.75
LRRC28-211ENST00000558890 HNRNPUQ00839 825 aaKnown RBP eCLIP10.34□□□□□ -0.75
LRRC28-211ENST00000558890 VPS72Q15906 364 aa10.34□□□□□ -0.75
LRRC28-211ENST00000558890 AMER1Q5JTC6 1135 aaPredicted RBP10.34□□□□□ -0.75
LRRC28-211ENST00000558890 TRPC5Q9UL62 973 aaPredicted RBP10.34□□□□□ -0.75
LRRC28-211ENST00000558890 PARD3Q8TEW0 1356 aa10.34□□□□□ -0.75
LRRC28-211ENST00000558890 SMG6Q86US8 1419 aaKnown RBP10.33□□□□□ -0.76
LRRC28-211ENST00000558890 NFAT5O94916 1531 aa10.33□□□□□ -0.76
LRRC28-211ENST00000558890 RXRBP28702 533 aa10.33□□□□□ -0.76
LRRC28-211ENST00000558890 RBM6P78332 1123 aaKnown RBP10.33□□□□□ -0.76
LRRC28-211ENST00000558890 GJD4Q96KN9 370 aaPredicted RBP10.33□□□□□ -0.76
LRRC28-211ENST00000558890 POLR3GLQ9BT43 218 aa10.33□□□□□ -0.76
LRRC28-211ENST00000558890 MRS2Q9HD23 443 aa10.33□□□□□ -0.76
LRRC28-211ENST00000558890 PRDM11Q9NQV5 511 aa10.33□□□□□ -0.76
LRRC28-211ENST00000558890 BTG4Q9NY30 223 aa10.33□□□□□ -0.76
LRRC28-211ENST00000558890 CAMTA1Q9Y6Y1 1673 aa10.33□□□□□ -0.76
LRRC28-211ENST00000558890 COL18A1P39060 1754 aa10.32□□□□□ -0.76
LRRC28-211ENST00000558890 KCNH5Q8NCM2 988 aa10.32□□□□□ -0.76
LRRC28-211ENST00000558890 RALBP1Q15311 655 aa10.31□□□□□ -0.76
LRRC28-211ENST00000558890 GGNBP2Q9H3C7 697 aa10.31□□□□□ -0.76
LRRC28-211ENST00000558890 LMO7Q8WWI1 1683 aa10.31□□□□□ -0.76
LRRC28-211ENST00000558890 FAM208AQ9UK61 1670 aaKnown RBP10.31□□□□□ -0.76
LRRC28-211ENST00000558890 SPATA31A5Q5VU36 1347 aa10.31□□□□□ -0.76
LRRC28-211ENST00000558890 SPATA31A7Q8IWB4 1347 aa10.31□□□□□ -0.76
LRRC28-211ENST00000558890 RTL1A6NKG5 1358 aa10.3□□□□□ -0.76
LRRC28-211ENST00000558890 HAP1P54257 671 aaPredicted RBP10.3□□□□□ -0.76
LRRC28-211ENST00000558890 CDK12Q9NYV4 1490 aaPredicted RBP10.3□□□□□ -0.76
LRRC28-211ENST00000558890 LTN1O94822 1766 aa10.29□□□□□ -0.76
LRRC28-211ENST00000558890 COL14A1Q05707 1796 aaKnown RBP10.29□□□□□ -0.76
LRRC28-211ENST00000558890 MAP2P11137 1827 aaKnown RBP10.29□□□□□ -0.76
LRRC28-211ENST00000558890 FKBP8Q14318 412 aa10.29□□□□□ -0.76
LRRC28-211ENST00000558890 LARP1Q6PKG0 1096 aaKnown RBP10.29□□□□□ -0.76
LRRC28-211ENST00000558890 COG3Q96JB2 828 aa10.29□□□□□ -0.76
LRRC28-211ENST00000558890 GLI3P10071 1580 aa10.29□□□□□ -0.76
LRRC28-211ENST00000558890 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.29□□□□□ -0.76
LRRC28-211ENST00000558890 NWD2Q9ULI1 1742 aa10.29□□□□□ -0.76
LRRC28-211ENST00000558890 SPATA31A1Q5TZJ5 1347 aa10.29□□□□□ -0.76
LRRC28-211ENST00000558890 INSRP06213 1382 aa10.28□□□□□ -0.76
LRRC28-211ENST00000558890 NRAPQ86VF7 1730 aa10.28□□□□□ -0.76
LRRC28-211ENST00000558890 IP6K1Q92551 441 aa10.28□□□□□ -0.76
LRRC28-211ENST00000558890 MAP3K19Q56UN5 1328 aa10.28□□□□□ -0.76
LRRC28-211ENST00000558890 PLEKHG2Q9H7P9 1386 aa10.27□□□□□ -0.76
LRRC28-211ENST00000558890 EP400Q96L91 3159 aa10.27□□□□□ -0.77
LRRC28-211ENST00000558890 BLMP54132 1417 aaPredicted RBP10.27□□□□□ -0.77
LRRC28-211ENST00000558890 SOCS7O14512 581 aa10.27□□□□□ -0.77
LRRC28-211ENST00000558890 SOX12O15370 315 aa10.27□□□□□ -0.77
LRRC28-211ENST00000558890 COL5A2P05997 1499 aaPredicted RBP10.27□□□□□ -0.77
LRRC28-211ENST00000558890 PLCH1Q4KWH8 1693 aa10.27□□□□□ -0.77
LRRC28-211ENST00000558890 RGS12O14924 1447 aa10.26□□□□□ -0.77
LRRC28-211ENST00000558890 BARGINQ6ZT62 677 aa10.26□□□□□ -0.77
LRRC28-211ENST00000558890 FAM9BQ8IZU0 186 aa10.26□□□□□ -0.77
LRRC28-211ENST00000558890 POLKQ9UBT6 870 aa10.26□□□□□ -0.77
LRRC28-211ENST00000558890 ZBED9Q6R2W3 1325 aa10.26□□□□□ -0.77
LRRC28-211ENST00000558890 MYBBP1AQ9BQG0 1328 aaKnown RBP10.26□□□□□ -0.77
LRRC28-211ENST00000558890 HOXC9P31274 260 aa10.25□□□□□ -0.77
LRRC28-211ENST00000558890 RRS1Q15050 365 aaKnown RBP10.25□□□□□ -0.77
LRRC28-211ENST00000558890 SEPT12Q8IYM1 358 aa10.25□□□□□ -0.77
LRRC28-211ENST00000558890 WDR17Q8IZU2 1322 aa10.25□□□□□ -0.77
LRRC28-211ENST00000558890 MORC1Q86VD1 984 aa10.24□□□□□ -0.77
LRRC28-211ENST00000558890 CARD10Q9BWT7 1032 aa10.24□□□□□ -0.77
LRRC28-211ENST00000558890 STRN4Q9NRL3 753 aa10.24□□□□□ -0.77
LRRC28-211ENST00000558890 EMILIN1Q9Y6C2 1016 aa10.24□□□□□ -0.77
LRRC28-211ENST00000558890 ERBB3P21860 1342 aa10.24□□□□□ -0.77
LRRC28-211ENST00000558890 FLT4P35916 1363 aa10.24□□□□□ -0.77
LRRC28-211ENST00000558890 EVA1CP58658 441 aa10.23□□□□□ -0.77
LRRC28-211ENST00000558890 FAM98CQ17RN3 349 aaKnown RBP10.23□□□□□ -0.77
LRRC28-211ENST00000558890 CCDC184Q52MB2 194 aa10.23□□□□□ -0.77
LRRC28-211ENST00000558890 HSP90AB2PQ58FF8 381 aa10.23□□□□□ -0.77
LRRC28-211ENST00000558890 TCP11L2Q8N4U5 519 aa10.23□□□□□ -0.77
LRRC28-211ENST00000558890 THRAP3Q9Y2W1 955 aaKnown RBP10.23□□□□□ -0.77
LRRC28-211ENST00000558890 PEAK1Q9H792 1746 aa10.23□□□□□ -0.77
LRRC28-211ENST00000558890 CRB1P82279 1406 aa10.23□□□□□ -0.77
LRRC28-211ENST00000558890 RGPD1P0DJD0 1748 aa10.22□□□□□ -0.77
LRRC28-211ENST00000558890 MYCNP04198 464 aaPredicted RBP10.22□□□□□ -0.77
LRRC28-211ENST00000558890 ANKRD24Q8TF21 1146 aa10.22□□□□□ -0.77
LRRC28-211ENST00000558890 COL3A1P02461 1466 aaPredicted RBP10.22□□□□□ -0.77
LRRC28-211ENST00000558890 ZBTB7CA1YPR0 619 aa10.21□□□□□ -0.77
LRRC28-211ENST00000558890 UPF1Q92900 1129 aaKnown RBP eCLIP10.21□□□□□ -0.77
LRRC28-211ENST00000558890 DISP2A7MBM2 1401 aa10.21□□□□□ -0.78
LRRC28-211ENST00000558890 NCAPD2Q15021 1401 aa10.21□□□□□ -0.78
LRRC28-211ENST00000558890 RGPD5Q99666 1765 aa10.21□□□□□ -0.78
LRRC28-211ENST00000558890 PPP2R1AP30153 589 aa10.2□□□□□ -0.78
LRRC28-211ENST00000558890 AMPHP49418 695 aa10.2□□□□□ -0.78
LRRC28-211ENST00000558890 CC2D1BQ5T0F9 858 aaKnown RBP10.2□□□□□ -0.78
LRRC28-211ENST00000558890 NBPF6Q5VWK0 638 aa10.2□□□□□ -0.78
LRRC28-211ENST00000558890 ERICH6BQ5W0A0 696 aa10.2□□□□□ -0.78
LRRC28-211ENST00000558890 NBPF4Q96M43 638 aa10.2□□□□□ -0.78
LRRC28-211ENST00000558890 THSD7AQ9UPZ6 1657 aa10.2□□□□□ -0.78
LRRC28-211ENST00000558890 CNGB1Q14028 1251 aaPredicted RBP10.19□□□□□ -0.78
LRRC28-211ENST00000558890 TOM1L2Q6ZVM7 507 aa10.19□□□□□ -0.78
LRRC28-211ENST00000558890 CFAP53Q96M91 514 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms