RNA–Protein interactions for RNA: ENST00000558861.1

LRRC28-209, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-209ENST00000558861 RAD54L2Q9Y4B4 1467 aa10.17□□□□□ -0.78
LRRC28-209ENST00000558861 ZNF511Q8NB15 262 aa10.16□□□□□ -0.78
LRRC28-209ENST00000558861 ADAM32Q8TC27 787 aa10.16□□□□□ -0.78
LRRC28-209ENST00000558861 ZNF608Q9ULD9 1512 aaPredicted RBP10.16□□□□□ -0.78
LRRC28-209ENST00000558861 MAGEB6P1A0A0J9YX57 407 aa10.15□□□□□ -0.78
LRRC28-209ENST00000558861 HOMEZQ8IX15 550 aa10.15□□□□□ -0.78
LRRC28-209ENST00000558861 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.15□□□□□ -0.78
LRRC28-209ENST00000558861 PCDHB9Q9Y5E1 797 aa10.15□□□□□ -0.78
LRRC28-209ENST00000558861 SOGA1O94964 1423 aa10.15□□□□□ -0.79
LRRC28-209ENST00000558861 TRIM32Q13049 653 aa10.14□□□□□ -0.79
LRRC28-209ENST00000558861 C4orf48Q5BLP8 95 aa10.14□□□□□ -0.79
LRRC28-209ENST00000558861 SH3RF1Q7Z6J0 888 aa10.14□□□□□ -0.79
LRRC28-209ENST00000558861 ABCA10Q8WWZ4 1543 aa10.13□□□□□ -0.79
LRRC28-209ENST00000558861 SH3BP2P78314 561 aa10.13□□□□□ -0.79
LRRC28-209ENST00000558861 AGERQ15109 404 aa10.13□□□□□ -0.79
LRRC28-209ENST00000558861 ZBTB33Q86T24 672 aa10.13□□□□□ -0.79
LRRC28-209ENST00000558861 ZBTB24O43167 697 aaPredicted RBP10.12□□□□□ -0.79
LRRC28-209ENST00000558861 PPP1R12CQ9BZL4 782 aa10.12□□□□□ -0.79
LRRC28-209ENST00000558861 PIK3CDO00329 1044 aa10.11□□□□□ -0.79
LRRC28-209ENST00000558861 ERFEQ4G0M1 354 aa10.11□□□□□ -0.79
LRRC28-209ENST00000558861 CFAP70Q5T0N1 1121 aa10.11□□□□□ -0.79
LRRC28-209ENST00000558861 BPHLQ86WA6 291 aaPredicted RBP10.11□□□□□ -0.79
LRRC28-209ENST00000558861 WDR97A6NE52 1622 aa10.11□□□□□ -0.79
LRRC28-209ENST00000558861 PALM3A6NDB9 673 aaPredicted RBP10.1□□□□□ -0.79
LRRC28-209ENST00000558861 SKOR1P84550 965 aa10.1□□□□□ -0.79
LRRC28-209ENST00000558861 TBC1D9Q6ZT07 1266 aa10.1□□□□□ -0.79
LRRC28-209ENST00000558861 EMID1Q96A84 441 aaPredicted RBP10.1□□□□□ -0.79
LRRC28-209ENST00000558861 TFIP11Q9UBB9 837 aaKnown RBP10.09□□□□□ -0.79
LRRC28-209ENST00000558861 TDRD9Q8NDG6 1382 aaKnown RBP10.09□□□□□ -0.79
LRRC28-209ENST00000558861 AQRO60306 1485 aaKnown RBP eCLIP10.09□□□□□ -0.79
LRRC28-209ENST00000558861 RFX1P22670 979 aa10.08□□□□□ -0.8
LRRC28-209ENST00000558861 IFFO2Q5TF58 517 aa10.08□□□□□ -0.8
LRRC28-209ENST00000558861 LIAT1Q6ZQX7 453 aa10.08□□□□□ -0.8
LRRC28-209ENST00000558861 FAM174AQ8TBP5 190 aa10.08□□□□□ -0.8
LRRC28-209ENST00000558861 C1QTNF2Q9BXJ5 285 aa10.08□□□□□ -0.8
LRRC28-209ENST00000558861 EIF4G3O43432 1585 aaKnown RBP10.08□□□□□ -0.8
LRRC28-209ENST00000558861 RPIAP49247 311 aa10.07□□□□□ -0.8
LRRC28-209ENST00000558861 DZIP3Q86Y13 1208 aaKnown RBP10.07□□□□□ -0.8
LRRC28-209ENST00000558861 CEP126Q9P2H0 1117 aa10.07□□□□□ -0.8
LRRC28-209ENST00000558861 MAFBQ9Y5Q3 323 aaPredicted RBP10.07□□□□□ -0.8
LRRC28-209ENST00000558861 ABCA5Q8WWZ7 1642 aa10.07□□□□□ -0.8
LRRC28-209ENST00000558861 LMOD1P29536 600 aaPredicted RBP10.06□□□□□ -0.8
LRRC28-209ENST00000558861 WNT7BP56706 349 aa10.06□□□□□ -0.8
LRRC28-209ENST00000558861 SLC10A4Q96EP9 437 aa10.06□□□□□ -0.8
LRRC28-209ENST00000558861 PLA2G2EQ9NZK7 142 aa10.06□□□□□ -0.8
LRRC28-209ENST00000558861 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.05□□□□□ -0.8
LRRC28-209ENST00000558861 ATP9BO43861 1147 aa10.05□□□□□ -0.8
LRRC28-209ENST00000558861 ZNF592Q92610 1267 aa10.05□□□□□ -0.8
LRRC28-209ENST00000558861 MCCD1P59942 119 aaPredicted RBP10.04□□□□□ -0.8
LRRC28-209ENST00000558861 SLFNL1Q499Z3 407 aa10.04□□□□□ -0.8
LRRC28-209ENST00000558861 GAPVD1Q14C86 1478 aa10.04□□□□□ -0.8
LRRC28-209ENST00000558861 SKIP12755 728 aa10.03□□□□□ -0.8
LRRC28-209ENST00000558861 RNF135Q8IUD6 432 aa10.03□□□□□ -0.8
LRRC28-209ENST00000558861 TRMT44Q8IYL2 757 aaKnown RBP10.03□□□□□ -0.8
LRRC28-209ENST00000558861 CD2BP2O95400 341 aaKnown RBP10.02□□□□□ -0.81
LRRC28-209ENST00000558861 DEPDC4Q8N2C3 294 aa10.02□□□□□ -0.81
LRRC28-209ENST00000558861 PHTF2Q8N3S3 785 aa10.02□□□□□ -0.81
LRRC28-209ENST00000558861 NFATC2IPQ8NCF5 419 aa10.02□□□□□ -0.81
LRRC28-209ENST00000558861 EHBP1Q8NDI1 1231 aa10.02□□□□□ -0.81
LRRC28-209ENST00000558861 PBXIP1Q96AQ6 731 aa10.02□□□□□ -0.81
LRRC28-209ENST00000558861 GRIN2BQ13224 1484 aa10.02□□□□□ -0.81
LRRC28-209ENST00000558861 A0A0G2JS52 829 aa10.01□□□□□ -0.81
LRRC28-209ENST00000558861 USP17L5A8MUK1 530 aa10.01□□□□□ -0.81
LRRC28-209ENST00000558861 GIGYF1O75420 1035 aaPredicted RBP10.01□□□□□ -0.81
LRRC28-209ENST00000558861 VARSP26640 1264 aaKnown RBP10.01□□□□□ -0.81
LRRC28-209ENST00000558861 SLC19A1P41440 591 aa10.01□□□□□ -0.81
LRRC28-209ENST00000558861 SRPK2P78362 688 aaKnown RBP10.01□□□□□ -0.81
LRRC28-209ENST00000558861 RC3H1Q5TC82 1133 aaKnown RBP10.01□□□□□ -0.81
LRRC28-209ENST00000558861 USP17L3A6NCW0 530 aa10□□□□□ -0.81
LRRC28-209ENST00000558861 USP17L4A6NCW7 530 aa10□□□□□ -0.81
LRRC28-209ENST00000558861 USP17L2Q6R6M4 530 aa10□□□□□ -0.81
LRRC28-209ENST00000558861 USP17L1Q7RTZ2 530 aa10□□□□□ -0.81
LRRC28-209ENST00000558861 PLPP7Q8NBV4 271 aa10□□□□□ -0.81
LRRC28-209ENST00000558861 IGF1RP08069 1367 aa10□□□□□ -0.81
LRRC28-209ENST00000558861 SNAPC4Q5SXM2 1469 aa9.99□□□□□ -0.81
LRRC28-209ENST00000558861 MAGI1Q96QZ7 1491 aaPredicted RBP9.99□□□□□ -0.81
LRRC28-209ENST00000558861 ERICH3Q5RHP9 1530 aa9.99□□□□□ -0.81
LRRC28-209ENST00000558861 PPP1R15AO75807 674 aaPredicted RBP9.99□□□□□ -0.81
LRRC28-209ENST00000558861 NBPF20Q3BBV1 942 aa9.99□□□□□ -0.81
LRRC28-209ENST00000558861 TSGA10IPQ3SY00 556 aa9.99□□□□□ -0.81
LRRC28-209ENST00000558861 CDCA8Q53HL2 280 aa9.99□□□□□ -0.81
LRRC28-209ENST00000558861 CCDC85AQ96PX6 553 aaPredicted RBP9.99□□□□□ -0.81
LRRC28-209ENST00000558861 KIF27Q86VH2 1401 aa9.99□□□□□ -0.81
LRRC28-209ENST00000558861 RUSC2Q8N2Y8 1516 aa9.98□□□□□ -0.81
LRRC28-209ENST00000558861 CHIC2Q9UKJ5 165 aa9.98□□□□□ -0.81
LRRC28-209ENST00000558861 TLL2Q9Y6L7 1015 aa9.98□□□□□ -0.81
LRRC28-209ENST00000558861 ESPNB1AK53 854 aa9.97□□□□□ -0.81
LRRC28-209ENST00000558861 RAB15P59190 212 aa9.97□□□□□ -0.81
LRRC28-209ENST00000558861 NCOA4Q13772 614 aa9.97□□□□□ -0.81
LRRC28-209ENST00000558861 PLEKHM2Q8IWE5 1019 aa9.97□□□□□ -0.81
LRRC28-209ENST00000558861 RETREG2Q8NC44 543 aa9.97□□□□□ -0.81
LRRC28-209ENST00000558861 CDV3Q9UKY7 258 aaKnown RBP9.97□□□□□ -0.81
LRRC28-209ENST00000558861 ARID5BQ14865 1188 aa9.96□□□□□ -0.82
LRRC28-209ENST00000558861 SPRYD7Q5W111 196 aa9.96□□□□□ -0.82
LRRC28-209ENST00000558861 TRAF7Q6Q0C0 670 aa9.96□□□□□ -0.82
LRRC28-209ENST00000558861 VASH1Q7L8A9 365 aaPredicted RBP9.96□□□□□ -0.82
LRRC28-209ENST00000558861 KCTD15Q96SI1 283 aaPredicted RBP9.96□□□□□ -0.82
LRRC28-209ENST00000558861 WNT7AO00755 349 aa9.95□□□□□ -0.82
LRRC28-209ENST00000558861 KANK4Q5T7N3 995 aaPredicted RBP9.95□□□□□ -0.82
LRRC28-209ENST00000558861 MRGPRX2Q96LB1 330 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms