RNA–Protein interactions for RNA: ENST00000558700.5

TRAF3-205, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-205ENST00000558700 NUTM2GQ5VZR2 741 aa11.52□□□□□ -0.57
TRAF3-205ENST00000558700 CABP2Q9NPB3 220 aa11.52□□□□□ -0.57
TRAF3-205ENST00000558700 ZBTB47Q9UFB7 747 aaPredicted RBP11.52□□□□□ -0.57
TRAF3-205ENST00000558700 TNS1Q9HBL0 1735 aaKnown RBP11.52□□□□□ -0.57
TRAF3-205ENST00000558700 SSH2Q76I76 1423 aa11.52□□□□□ -0.57
TRAF3-205ENST00000558700 ABTB2Q8N961 1025 aa11.51□□□□□ -0.57
TRAF3-205ENST00000558700 TONSLQ96HA7 1378 aa11.51□□□□□ -0.57
TRAF3-205ENST00000558700 SBNO2Q9Y2G9 1366 aa11.51□□□□□ -0.57
TRAF3-205ENST00000558700 RGL2O15211 777 aa11.5□□□□□ -0.57
TRAF3-205ENST00000558700 ZC3H6P61129 1189 aaKnown RBP11.5□□□□□ -0.57
TRAF3-205ENST00000558700 CHRNA2Q15822 529 aa11.5□□□□□ -0.57
TRAF3-205ENST00000558700 NLRP13Q86W25 1043 aa11.5□□□□□ -0.57
TRAF3-205ENST00000558700 ZRANB1Q9UGI0 708 aa11.5□□□□□ -0.57
TRAF3-205ENST00000558700 SSUH2Q9Y2M2 353 aa11.5□□□□□ -0.57
TRAF3-205ENST00000558700 WNK3Q9BYP7 1800 aa11.5□□□□□ -0.57
TRAF3-205ENST00000558700 SPATA31A1Q5TZJ5 1347 aa11.5□□□□□ -0.57
TRAF3-205ENST00000558700 CAMTA1Q9Y6Y1 1673 aa11.49□□□□□ -0.57
TRAF3-205ENST00000558700 PARP4Q9UKK3 1724 aaKnown RBP11.49□□□□□ -0.57
TRAF3-205ENST00000558700 STRN4Q9NRL3 753 aa11.49□□□□□ -0.57
TRAF3-205ENST00000558700 USP54Q70EL1 1684 aa11.49□□□□□ -0.57
TRAF3-205ENST00000558700 CABP1Q9NZU7 370 aa11.48□□□□□ -0.57
TRAF3-205ENST00000558700 CIZ1Q9ULV3 898 aaPredicted RBP11.48□□□□□ -0.57
TRAF3-205ENST00000558700 COL5A2P05997 1499 aaPredicted RBP11.48□□□□□ -0.57
TRAF3-205ENST00000558700 ABCC6O95255 1503 aa11.47□□□□□ -0.57
TRAF3-205ENST00000558700 DISP2A7MBM2 1401 aa11.47□□□□□ -0.57
TRAF3-205ENST00000558700 LRRC37A3O60309 1634 aa11.46□□□□□ -0.57
TRAF3-205ENST00000558700 CPSF1Q10570 1443 aaKnown RBP11.46□□□□□ -0.57
TRAF3-205ENST00000558700 GCP02774 474 aa11.46□□□□□ -0.57
TRAF3-205ENST00000558700 BAG6P46379 1132 aa11.46□□□□□ -0.57
TRAF3-205ENST00000558700 LRP5O75197 1615 aa11.46□□□□□ -0.58
TRAF3-205ENST00000558700 CRB1P82279 1406 aa11.45□□□□□ -0.58
TRAF3-205ENST00000558700 AATKQ6ZMQ8 1374 aa11.45□□□□□ -0.58
TRAF3-205ENST00000558700 TTC21AQ8NDW8 1320 aa11.45□□□□□ -0.58
TRAF3-205ENST00000558700 EVA1CP58658 441 aa11.45□□□□□ -0.58
TRAF3-205ENST00000558700 TPRNQ4KMQ1 711 aa11.45□□□□□ -0.58
TRAF3-205ENST00000558700 BARGINQ6ZT62 677 aa11.45□□□□□ -0.58
TRAF3-205ENST00000558700 DEFB132Q7Z7B7 95 aa11.45□□□□□ -0.58
TRAF3-205ENST00000558700 CARD11Q9BXL7 1154 aa11.45□□□□□ -0.58
TRAF3-205ENST00000558700 COL18A1P39060 1754 aa11.45□□□□□ -0.58
TRAF3-205ENST00000558700 NFAT5O94916 1531 aa11.45□□□□□ -0.58
TRAF3-205ENST00000558700 NLRP6P59044 892 aa11.44□□□□□ -0.58
TRAF3-205ENST00000558700 TCP11L2Q8N4U5 519 aa11.44□□□□□ -0.58
TRAF3-205ENST00000558700 KTN1Q86UP2 1357 aaKnown RBP11.43□□□□□ -0.58
TRAF3-205ENST00000558700 RREB1Q92766 1687 aa11.43□□□□□ -0.58
TRAF3-205ENST00000558700 TTC21BQ7Z4L5 1316 aa11.43□□□□□ -0.58
TRAF3-205ENST00000558700 ZBTB7CA1YPR0 619 aa11.43□□□□□ -0.58
TRAF3-205ENST00000558700 LARP1Q6PKG0 1096 aaKnown RBP11.43□□□□□ -0.58
TRAF3-205ENST00000558700 POTEDQ86YR6 584 aa11.43□□□□□ -0.58
TRAF3-205ENST00000558700 USP35Q9P2H5 1018 aa11.43□□□□□ -0.58
TRAF3-205ENST00000558700 THRAP3Q9Y2W1 955 aaKnown RBP11.43□□□□□ -0.58
TRAF3-205ENST00000558700 RGPD5Q99666 1765 aa11.43□□□□□ -0.58
TRAF3-205ENST00000558700 RGPD3A6NKT7 1758 aaPredicted RBP11.42□□□□□ -0.58
TRAF3-205ENST00000558700 LTN1O94822 1766 aa11.42□□□□□ -0.58
TRAF3-205ENST00000558700 RGPD4Q7Z3J3 1758 aa11.42□□□□□ -0.58
TRAF3-205ENST00000558700 PEAK1Q9H792 1746 aa11.41□□□□□ -0.58
TRAF3-205ENST00000558700 CD163L1Q9NR16 1453 aa11.41□□□□□ -0.58
TRAF3-205ENST00000558700 DSG3P32926 999 aa11.41□□□□□ -0.58
TRAF3-205ENST00000558700 TRIM26Q12899 539 aaPredicted RBP11.41□□□□□ -0.58
TRAF3-205ENST00000558700 PDE3BQ13370 1112 aa11.41□□□□□ -0.58
TRAF3-205ENST00000558700 FAM182BQ5T319 152 aa11.41□□□□□ -0.58
TRAF3-205ENST00000558700 FAM196AQ6ZSG2 479 aa11.41□□□□□ -0.58
TRAF3-205ENST00000558700 KCNH5Q8NCM2 988 aa11.41□□□□□ -0.58
TRAF3-205ENST00000558700 EDC4Q6P2E9 1401 aaKnown RBP11.41□□□□□ -0.58
TRAF3-205ENST00000558700 PARD3Q8TEW0 1356 aa11.41□□□□□ -0.58
TRAF3-205ENST00000558700 OVOS2A0A0G2JMS6 1433 aa11.4□□□□□ -0.58
TRAF3-205ENST00000558700 OVOS2A0A0J9YW53 1432 aa11.4□□□□□ -0.58
TRAF3-205ENST00000558700 OVOS2Q6IE36 1432 aa11.4□□□□□ -0.58
TRAF3-205ENST00000558700 NUP188Q5SRE5 1749 aa11.4□□□□□ -0.58
TRAF3-205ENST00000558700 NINLQ9Y2I6 1382 aa11.4□□□□□ -0.59
TRAF3-205ENST00000558700 WDR17Q8IZU2 1322 aa11.39□□□□□ -0.59
TRAF3-205ENST00000558700 C11orf95C9JLR9 678 aaPredicted RBP11.39□□□□□ -0.59
TRAF3-205ENST00000558700 FAM208AQ9UK61 1670 aaKnown RBP11.39□□□□□ -0.59
TRAF3-205ENST00000558700 USP31Q70CQ4 1352 aa11.39□□□□□ -0.59
TRAF3-205ENST00000558700 SBF2Q86WG5 1849 aa11.38□□□□□ -0.59
TRAF3-205ENST00000558700 EN1Q05925 392 aaPredicted RBP11.38□□□□□ -0.59
TRAF3-205ENST00000558700 HDGFL2Q7Z4V5 671 aaPredicted RBP11.38□□□□□ -0.59
TRAF3-205ENST00000558700 TSHZ2Q9NRE2 1034 aa11.38□□□□□ -0.59
TRAF3-205ENST00000558700 A0A1W2PP64 1363 aa11.38□□□□□ -0.59
TRAF3-205ENST00000558700 SOX12O15370 315 aa11.37□□□□□ -0.59
TRAF3-205ENST00000558700 TRIM37O94972 964 aa11.37□□□□□ -0.59
TRAF3-205ENST00000558700 TOM1L2Q6ZVM7 507 aa11.37□□□□□ -0.59
TRAF3-205ENST00000558700 ARHGEF25Q86VW2 580 aa11.37□□□□□ -0.59
TRAF3-205ENST00000558700 PUS7Q96PZ0 661 aaKnown RBP11.37□□□□□ -0.59
TRAF3-205ENST00000558700 TERF2IPQ9NYB0 399 aa11.37□□□□□ -0.59
TRAF3-205ENST00000558700 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.36□□□□□ -0.59
TRAF3-205ENST00000558700 TMC1Q8TDI8 760 aa11.36□□□□□ -0.59
TRAF3-205ENST00000558700 CCDC7Q96M83 1385 aa11.36□□□□□ -0.59
TRAF3-205ENST00000558700 TNS2Q63HR2 1409 aa11.35□□□□□ -0.59
TRAF3-205ENST00000558700 APBA3O96018 575 aa11.35□□□□□ -0.59
TRAF3-205ENST00000558700 CSB-PGBD3P0DP91 1061 aa11.35□□□□□ -0.59
TRAF3-205ENST00000558700 CDCA7Q9BWT1 371 aaPredicted RBP11.35□□□□□ -0.59
TRAF3-205ENST00000558700 USP47Q96K76 1375 aa11.34□□□□□ -0.59
TRAF3-205ENST00000558700 PSDA5PKW4 1024 aaPredicted RBP11.34□□□□□ -0.59
TRAF3-205ENST00000558700 EZH2Q15910 746 aaKnown RBP11.34□□□□□ -0.59
TRAF3-205ENST00000558700 DDB1Q16531 1140 aa11.34□□□□□ -0.59
TRAF3-205ENST00000558700 NHSQ6T4R5 1651 aa11.33□□□□□ -0.6
TRAF3-205ENST00000558700 KIF20BQ96Q89 1820 aa11.33□□□□□ -0.6
TRAF3-205ENST00000558700 NBR1Q14596 966 aa11.33□□□□□ -0.6
TRAF3-205ENST00000558700 NME9Q86XW9 330 aa11.33□□□□□ -0.6
TRAF3-205ENST00000558700 CAMKK2Q96RR4 588 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms