RNA–Protein interactions for RNA: ENST00000557945.5

CASC4-204, Transcript of cancer susceptibility 4, humanhuman

TSL 1 (best)

Gene CASC4, Length 1,386 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-204ENST00000557945 SLIT2O94813 1529 aa28.77■■■□□ 2.2
CASC4-204ENST00000557945 PLCH1Q4KWH8 1693 aa28.77■■■□□ 2.2
CASC4-204ENST00000557945 STRN4Q9NRL3 753 aa28.76■■■□□ 2.2
CASC4-204ENST00000557945 CAMTA1Q9Y6Y1 1673 aa28.76■■■□□ 2.19
CASC4-204ENST00000557945 RTL1A6NKG5 1358 aa28.76■■■□□ 2.19
CASC4-204ENST00000557945 PPP2R1AP30153 589 aa28.75■■■□□ 2.19
CASC4-204ENST00000557945 COL18A1P39060 1754 aa28.75■■■□□ 2.19
CASC4-204ENST00000557945 FLT4P35916 1363 aa28.75■■■□□ 2.19
CASC4-204ENST00000557945 LMO7Q8WWI1 1683 aa28.75■■■□□ 2.19
CASC4-204ENST00000557945 MTHFSP49914 203 aa28.75■■■□□ 2.19
CASC4-204ENST00000557945 UNC5CLQ8IV45 518 aa28.75■■■□□ 2.19
CASC4-204ENST00000557945 KIF24Q5T7B8 1368 aa28.74■■■□□ 2.19
CASC4-204ENST00000557945 ABCC6O95255 1503 aa28.74■■■□□ 2.19
CASC4-204ENST00000557945 ANP32CO43423 234 aa28.74■■■□□ 2.19
CASC4-204ENST00000557945 HSP90AB2PQ58FF8 381 aa28.74■■■□□ 2.19
CASC4-204ENST00000557945 LTV1Q96GA3 475 aaPredicted RBP28.74■■■□□ 2.19
CASC4-204ENST00000557945 PRKRIP1Q9H875 184 aaPredicted RBP28.74■■■□□ 2.19
CASC4-204ENST00000557945 PEAK1Q9H792 1746 aa28.72■■■□□ 2.19
CASC4-204ENST00000557945 BLMP54132 1417 aaPredicted RBP28.72■■■□□ 2.19
CASC4-204ENST00000557945 BCL9LQ86UU0 1499 aa28.72■■■□□ 2.19
CASC4-204ENST00000557945 CSB-PGBD3P0DP91 1061 aa28.72■■■□□ 2.19
CASC4-204ENST00000557945 ZNF772Q68DY9 489 aaPredicted RBP28.72■■■□□ 2.19
CASC4-204ENST00000557945 NWD2Q9ULI1 1742 aa28.72■■■□□ 2.19
CASC4-204ENST00000557945 ANKRD24Q8TF21 1146 aa28.71■■■□□ 2.19
CASC4-204ENST00000557945 SMG6Q86US8 1419 aaKnown RBP28.71■■■□□ 2.19
CASC4-204ENST00000557945 COL5A2P05997 1499 aaPredicted RBP28.7■■■□□ 2.19
CASC4-204ENST00000557945 RGPD5Q99666 1765 aa28.69■■■□□ 2.18
CASC4-204ENST00000557945 INSRP06213 1382 aa28.69■■■□□ 2.18
CASC4-204ENST00000557945 CCDC9Q9Y3X0 531 aaKnown RBP28.69■■■□□ 2.18
CASC4-204ENST00000557945 DIEXFQ68CQ4 756 aaKnown RBP28.68■■■□□ 2.18
CASC4-204ENST00000557945 MYBBP1AQ9BQG0 1328 aaKnown RBP28.68■■■□□ 2.18
CASC4-204ENST00000557945 LARP1Q6PKG0 1096 aaKnown RBP28.67■■■□□ 2.18
CASC4-204ENST00000557945 CDK12Q9NYV4 1490 aaPredicted RBP28.67■■■□□ 2.18
CASC4-204ENST00000557945 NRAPQ86VF7 1730 aa28.67■■■□□ 2.18
CASC4-204ENST00000557945 QTRT2Q9H974 415 aaKnown RBP28.66■■■□□ 2.18
CASC4-204ENST00000557945 TRPC5Q9UL62 973 aaPredicted RBP28.66■■■□□ 2.18
CASC4-204ENST00000557945 ERBB3P21860 1342 aa28.66■■■□□ 2.18
CASC4-204ENST00000557945 TOM1L2Q6ZVM7 507 aa28.65■■■□□ 2.18
CASC4-204ENST00000557945 RGS17Q9UGC6 210 aaPredicted RBP28.65■■■□□ 2.18
CASC4-204ENST00000557945 WDR17Q8IZU2 1322 aa28.65■■■□□ 2.18
CASC4-204ENST00000557945 VPS72Q15906 364 aa28.64■■■□□ 2.18
CASC4-204ENST00000557945 CFAP53Q96M91 514 aa28.64■■■□□ 2.18
CASC4-204ENST00000557945 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.63■■■□□ 2.17
CASC4-204ENST00000557945 NLRP2Q9NX02 1062 aa28.62■■■□□ 2.17
CASC4-204ENST00000557945 EIF4A2Q14240 407 aaKnown RBP28.62■■■□□ 2.17
CASC4-204ENST00000557945 USP35Q9P2H5 1018 aa28.62■■■□□ 2.17
CASC4-204ENST00000557945 ATRNO75882 1429 aa28.62■■■□□ 2.17
CASC4-204ENST00000557945 CRB1P82279 1406 aa28.59■■■□□ 2.17
CASC4-204ENST00000557945 SPATA31A5Q5VU36 1347 aa28.59■■■□□ 2.17
CASC4-204ENST00000557945 SPATA31A7Q8IWB4 1347 aa28.59■■■□□ 2.17
CASC4-204ENST00000557945 DIAPH1O60610 1272 aaKnown RBP28.58■■■□□ 2.17
CASC4-204ENST00000557945 POTEAQ6S8J7 498 aa28.58■■■□□ 2.17
CASC4-204ENST00000557945 GJD4Q96KN9 370 aaPredicted RBP28.58■■■□□ 2.17
CASC4-204ENST00000557945 CARD10Q9BWT7 1032 aa28.57■■■□□ 2.16
CASC4-204ENST00000557945 SPATA31A1Q5TZJ5 1347 aa28.56■■■□□ 2.16
CASC4-204ENST00000557945 IL13P35225 146 aa28.55■■■□□ 2.16
CASC4-204ENST00000557945 NBPF6Q5VWK0 638 aa28.54■■■□□ 2.16
CASC4-204ENST00000557945 NBPF4Q96M43 638 aa28.54■■■□□ 2.16
CASC4-204ENST00000557945 RBM6P78332 1123 aaKnown RBP28.53■■■□□ 2.16
CASC4-204ENST00000557945 TCP11L2Q8N4U5 519 aa28.53■■■□□ 2.16
CASC4-204ENST00000557945 USHBP1Q8N6Y0 703 aa28.53■■■□□ 2.16
CASC4-204ENST00000557945 EYA1Q99502 592 aa28.53■■■□□ 2.16
CASC4-204ENST00000557945 COL3A1P02461 1466 aaPredicted RBP28.53■■■□□ 2.16
CASC4-204ENST00000557945 RXRBP28702 533 aa28.52■■■□□ 2.16
CASC4-204ENST00000557945 FAM208AQ9UK61 1670 aaKnown RBP28.52■■■□□ 2.16
CASC4-204ENST00000557945 U2SURPO15042 1029 aaKnown RBP28.5■■■□□ 2.15
CASC4-204ENST00000557945 FAM98CQ17RN3 349 aaKnown RBP28.5■■■□□ 2.15
CASC4-204ENST00000557945 NUDCQ9Y266 331 aa28.5■■■□□ 2.15
CASC4-204ENST00000557945 THRAP3Q9Y2W1 955 aaKnown RBP28.5■■■□□ 2.15
CASC4-204ENST00000557945 RGPD2P0DJD1 1756 aa28.49■■■□□ 2.15
CASC4-204ENST00000557945 GLI3P10071 1580 aa28.49■■■□□ 2.15
CASC4-204ENST00000557945 A0A0G2JS52 829 aa28.48■■■□□ 2.15
CASC4-204ENST00000557945 MYT1Q01538 1121 aa28.48■■■□□ 2.15
CASC4-204ENST00000557945 IGSF1Q8N6C5 1336 aa28.46■■■□□ 2.15
CASC4-204ENST00000557945 BARGINQ6ZT62 677 aa28.46■■■□□ 2.15
CASC4-204ENST00000557945 CCDC184Q52MB2 194 aa28.44■■■□□ 2.14
CASC4-204ENST00000557945 SULT6B1Q6IMI4 303 aa28.44■■■□□ 2.14
CASC4-204ENST00000557945 U2AF1L5P0DN76 240 aaPredicted RBP28.43■■■□□ 2.14
CASC4-204ENST00000557945 U2AF1Q01081 240 aaKnown RBP eCLIP28.43■■■□□ 2.14
CASC4-204ENST00000557945 HMOX1P09601 288 aa28.42■■■□□ 2.14
CASC4-204ENST00000557945 IL2RBP14784 551 aa28.42■■■□□ 2.14
CASC4-204ENST00000557945 AEBP1Q8IUX7 1158 aa28.42■■■□□ 2.14
CASC4-204ENST00000557945 RAPGEF4Q8WZA2 1011 aa28.42■■■□□ 2.14
CASC4-204ENST00000557945 MRS2Q9HD23 443 aa28.42■■■□□ 2.14
CASC4-204ENST00000557945 MIER1Q8N108 512 aa28.4■■■□□ 2.14
CASC4-204ENST00000557945 CDCA7Q9BWT1 371 aaPredicted RBP28.4■■■□□ 2.14
CASC4-204ENST00000557945 RGPD1P0DJD0 1748 aa28.4■■■□□ 2.14
CASC4-204ENST00000557945 NCAPD2Q15021 1401 aa28.4■■■□□ 2.14
CASC4-204ENST00000557945 ONECUT3O60422 494 aaPredicted RBP28.39■■■□□ 2.14
CASC4-204ENST00000557945 TATP17735 454 aaPredicted RBP28.39■■■□□ 2.14
CASC4-204ENST00000557945 SEPT12Q8IYM1 358 aa28.39■■■□□ 2.14
CASC4-204ENST00000557945 WDR43Q15061 677 aaKnown RBP eCLIP28.38■■■□□ 2.13
CASC4-204ENST00000557945 DISP2A7MBM2 1401 aa28.37■■■□□ 2.13
CASC4-204ENST00000557945 MEGF6O75095 1541 aa28.36■■■□□ 2.13
CASC4-204ENST00000557945 KDRP35968 1356 aa28.35■■■□□ 2.13
CASC4-204ENST00000557945 DDB1Q16531 1140 aa28.34■■■□□ 2.13
CASC4-204ENST00000557945 WNK3Q9BYP7 1800 aa28.34■■■□□ 2.13
CASC4-204ENST00000557945 RGS12O14924 1447 aa28.33■■■□□ 2.13
CASC4-204ENST00000557945 EXOC5O00471 708 aa28.33■■■□□ 2.13
CASC4-204ENST00000557945 THSD7AQ9UPZ6 1657 aa28.33■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms