RNA–Protein interactions for RNA: ENST00000557539.1

MTHFD1-216, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 4

Gene MTHFD1, Length 509 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-216ENST00000557539 COL17A1Q9UMD9 1497 aaPredicted RBP8.09□□□□□ -1.11
MTHFD1-216ENST00000557539 GDF9O60383 454 aa8.09□□□□□ -1.11
MTHFD1-216ENST00000557539 CFAP70Q5T0N1 1121 aa8.09□□□□□ -1.11
MTHFD1-216ENST00000557539 FCF1Q9Y324 198 aaKnown RBP8.09□□□□□ -1.11
MTHFD1-216ENST00000557539 LTBP4Q8N2S1 1624 aa8.09□□□□□ -1.11
MTHFD1-216ENST00000557539 BRD1O95696 1058 aa8.08□□□□□ -1.12
MTHFD1-216ENST00000557539 FDX1P10109 184 aa8.08□□□□□ -1.12
MTHFD1-216ENST00000557539 RBM25P49756 843 aaKnown RBP8.08□□□□□ -1.12
MTHFD1-216ENST00000557539 PRR20EP86478 221 aa8.08□□□□□ -1.12
MTHFD1-216ENST00000557539 PRR20CP86479 221 aa8.08□□□□□ -1.12
MTHFD1-216ENST00000557539 PRR20DP86480 221 aa8.08□□□□□ -1.12
MTHFD1-216ENST00000557539 PRR20BP86481 221 aa8.08□□□□□ -1.12
MTHFD1-216ENST00000557539 PRR20AP86496 221 aa8.08□□□□□ -1.12
MTHFD1-216ENST00000557539 VAC14Q08AM6 782 aa8.08□□□□□ -1.12
MTHFD1-216ENST00000557539 KCNA1Q09470 495 aa8.08□□□□□ -1.12
MTHFD1-216ENST00000557539 HMX1Q9NP08 348 aaPredicted RBP8.08□□□□□ -1.12
MTHFD1-216ENST00000557539 USTQ9Y2C2 406 aa8.08□□□□□ -1.12
MTHFD1-216ENST00000557539 CARNS1A5YM72 827 aa8.07□□□□□ -1.12
MTHFD1-216ENST00000557539 TNFRSF10AO00220 468 aa8.07□□□□□ -1.12
MTHFD1-216ENST00000557539 CTDSPL2Q05D32 466 aa8.07□□□□□ -1.12
MTHFD1-216ENST00000557539 GRIPAP1Q4V328 841 aa8.07□□□□□ -1.12
MTHFD1-216ENST00000557539 MSS51Q4VC12 460 aa8.07□□□□□ -1.12
MTHFD1-216ENST00000557539 PPP1R12CQ9BZL4 782 aa8.07□□□□□ -1.12
MTHFD1-216ENST00000557539 RGS17Q9UGC6 210 aaPredicted RBP8.07□□□□□ -1.12
MTHFD1-216ENST00000557539 HOXA2O43364 376 aa8.06□□□□□ -1.12
MTHFD1-216ENST00000557539 USP46P62068 366 aa8.06□□□□□ -1.12
MTHFD1-216ENST00000557539 TSC1Q92574 1164 aa8.06□□□□□ -1.12
MTHFD1-216ENST00000557539 ZNF428Q96B54 188 aa8.06□□□□□ -1.12
MTHFD1-216ENST00000557539 TRIM34Q9BYJ4 488 aa8.06□□□□□ -1.12
MTHFD1-216ENST00000557539 PKD2L1Q9P0L9 805 aa8.06□□□□□ -1.12
MTHFD1-216ENST00000557539 MAPKBP1O60336 1514 aa8.05□□□□□ -1.12
MTHFD1-216ENST00000557539 SRPK2P78362 688 aaKnown RBP8.05□□□□□ -1.12
MTHFD1-216ENST00000557539 GUCA2AQ02747 115 aa8.05□□□□□ -1.12
MTHFD1-216ENST00000557539 IQSEC2Q5JU85 1478 aa8.05□□□□□ -1.12
MTHFD1-216ENST00000557539 LMOD1P29536 600 aaPredicted RBP8.04□□□□□ -1.12
MTHFD1-216ENST00000557539 RPIAP49247 311 aa8.04□□□□□ -1.12
MTHFD1-216ENST00000557539 MMP16P51512 607 aa8.04□□□□□ -1.12
MTHFD1-216ENST00000557539 LRRN4Q8WUT4 740 aa8.04□□□□□ -1.12
MTHFD1-216ENST00000557539 PCDHGC3Q9UN70 934 aa8.04□□□□□ -1.12
MTHFD1-216ENST00000557539 PALM3A6NDB9 673 aaPredicted RBP8.03□□□□□ -1.12
MTHFD1-216ENST00000557539 GPR37L1O60883 481 aa8.03□□□□□ -1.12
MTHFD1-216ENST00000557539 Q3C1V9 767 aa8.03□□□□□ -1.12
MTHFD1-216ENST00000557539 HELBQ8NG08 1087 aaPredicted RBP8.03□□□□□ -1.12
MTHFD1-216ENST00000557539 ALG2Q9H553 416 aa8.03□□□□□ -1.12
MTHFD1-216ENST00000557539 PTPRTO14522 1441 aa8.03□□□□□ -1.12
MTHFD1-216ENST00000557539 DGAT1O75907 488 aa8.02□□□□□ -1.13
MTHFD1-216ENST00000557539 MYT1Q01538 1121 aa8.02□□□□□ -1.13
MTHFD1-216ENST00000557539 MTMR2Q13614 643 aa8.02□□□□□ -1.13
MTHFD1-216ENST00000557539 CDCA8Q53HL2 280 aa8.02□□□□□ -1.13
MTHFD1-216ENST00000557539 USB1Q9BQ65 265 aaKnown RBP8.02□□□□□ -1.13
MTHFD1-216ENST00000557539 TFIP11Q9UBB9 837 aaKnown RBP8.02□□□□□ -1.13
MTHFD1-216ENST00000557539 FOXC1Q12948 553 aa8.01□□□□□ -1.13
MTHFD1-216ENST00000557539 SYMPKQ92797 1274 aaKnown RBP8.01□□□□□ -1.13
MTHFD1-216ENST00000557539 IVNS1ABPQ9Y6Y0 642 aa8.01□□□□□ -1.13
MTHFD1-216ENST00000557539 DXOO77932 396 aaKnown RBP8□□□□□ -1.13
MTHFD1-216ENST00000557539 PKDCCQ504Y2 493 aa8□□□□□ -1.13
MTHFD1-216ENST00000557539 EPS8L1Q8TE68 723 aa8□□□□□ -1.13
MTHFD1-216ENST00000557539 SENP3-EIF4A1A0A087X0R7 540 aa7.99□□□□□ -1.13
MTHFD1-216ENST00000557539 FAM187AA6NFU0 413 aa7.99□□□□□ -1.13
MTHFD1-216ENST00000557539 CFAP99D6REC4 459 aa7.99□□□□□ -1.13
MTHFD1-216ENST00000557539 C6orf229H3BNL8 230 aa7.99□□□□□ -1.13
MTHFD1-216ENST00000557539 CD2BP2O95400 341 aaKnown RBP7.99□□□□□ -1.13
MTHFD1-216ENST00000557539 POTEAQ6S8J7 498 aa7.99□□□□□ -1.13
MTHFD1-216ENST00000557539 PRR7Q8TB68 274 aa7.99□□□□□ -1.13
MTHFD1-216ENST00000557539 UCN2Q96RP3 112 aa7.99□□□□□ -1.13
MTHFD1-216ENST00000557539 VRTNQ9H8Y1 702 aa7.99□□□□□ -1.13
MTHFD1-216ENST00000557539 SEMA3FQ13275 785 aa7.98□□□□□ -1.13
MTHFD1-216ENST00000557539 TOR4AQ9NXH8 423 aa7.98□□□□□ -1.13
MTHFD1-216ENST00000557539 SOX11P35716 441 aa7.97□□□□□ -1.13
MTHFD1-216ENST00000557539 CCDC27Q2M243 656 aa7.97□□□□□ -1.13
MTHFD1-216ENST00000557539 ZNF787Q6DD87 383 aa7.97□□□□□ -1.13
MTHFD1-216ENST00000557539 SETD1AO15047 1707 aaKnown RBP7.96□□□□□ -1.14
MTHFD1-216ENST00000557539 E9PSI1 815 aa7.96□□□□□ -1.14
MTHFD1-216ENST00000557539 ATG7O95352 703 aa7.96□□□□□ -1.14
MTHFD1-216ENST00000557539 PIP4K2BP78356 416 aa7.96□□□□□ -1.14
MTHFD1-216ENST00000557539 MAFBQ9Y5Q3 323 aaPredicted RBP7.96□□□□□ -1.14
MTHFD1-216ENST00000557539 DCAF1Q9Y4B6 1507 aa7.96□□□□□ -1.14
MTHFD1-216ENST00000557539 TMEM88BA6NKF7 163 aa7.95□□□□□ -1.14
MTHFD1-216ENST00000557539 POTECB2RU33 542 aa7.95□□□□□ -1.14
MTHFD1-216ENST00000557539 ST8SIA5O15466 376 aa7.95□□□□□ -1.14
MTHFD1-216ENST00000557539 ZBTB24O43167 697 aaPredicted RBP7.95□□□□□ -1.14
MTHFD1-216ENST00000557539 TRIM32Q13049 653 aa7.95□□□□□ -1.14
MTHFD1-216ENST00000557539 NR6A1Q15406 480 aa7.95□□□□□ -1.14
MTHFD1-216ENST00000557539 TBC1D9Q6ZT07 1266 aa7.95□□□□□ -1.14
MTHFD1-216ENST00000557539 KIF21BO75037 1637 aa7.95□□□□□ -1.14
MTHFD1-216ENST00000557539 YEATS2Q9ULM3 1422 aa7.95□□□□□ -1.14
MTHFD1-216ENST00000557539 SND1Q7KZF4 910 aaKnown RBP eCLIP7.94□□□□□ -1.14
MTHFD1-216ENST00000557539 PNMA1Q8ND90 353 aa7.94□□□□□ -1.14
MTHFD1-216ENST00000557539 AAASQ9NRG9 546 aa7.94□□□□□ -1.14
MTHFD1-216ENST00000557539 ADAMTSL3P82987 1691 aa7.94□□□□□ -1.14
MTHFD1-216ENST00000557539 PPRC1Q5VV67 1664 aaKnown RBP7.94□□□□□ -1.14
MTHFD1-216ENST00000557539 JUNDP17535 347 aa7.93□□□□□ -1.14
MTHFD1-216ENST00000557539 RETREG3Q86VR2 466 aa7.93□□□□□ -1.14
MTHFD1-216ENST00000557539 CCDC24Q8N4L8 307 aa7.93□□□□□ -1.14
MTHFD1-216ENST00000557539 WNT7AO00755 349 aa7.92□□□□□ -1.14
MTHFD1-216ENST00000557539 EIF4G2P78344 907 aaKnown RBP eCLIP7.92□□□□□ -1.14
MTHFD1-216ENST00000557539 SKOR1P84550 965 aa7.92□□□□□ -1.14
MTHFD1-216ENST00000557539 CYP4X1Q8N118 509 aa7.92□□□□□ -1.14
MTHFD1-216ENST00000557539 PER1O15534 1290 aaPredicted RBP7.91□□□□□ -1.14
MTHFD1-216ENST00000557539 ATP9BO43861 1147 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms