RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 SPATA31A1Q5TZJ5 1347 aa17.24■□□□□ 0.35
SLIRP-209ENST00000557342 CARD14Q9BXL6 1004 aa17.24■□□□□ 0.35
SLIRP-209ENST00000557342 C11orf95C9JLR9 678 aaPredicted RBP17.23■□□□□ 0.35
SLIRP-209ENST00000557342 FAM98CQ17RN3 349 aaKnown RBP17.23■□□□□ 0.35
SLIRP-209ENST00000557342 SEPT12Q8IYM1 358 aa17.23■□□□□ 0.35
SLIRP-209ENST00000557342 ANKRD26Q9UPS8 1709 aa17.23■□□□□ 0.35
SLIRP-209ENST00000557342 THSD7AQ9UPZ6 1657 aa17.23■□□□□ 0.35
SLIRP-209ENST00000557342 CRB1P82279 1406 aa17.22■□□□□ 0.35
SLIRP-209ENST00000557342 A0A0G2JS52 829 aa17.22■□□□□ 0.35
SLIRP-209ENST00000557342 MYT1Q01538 1121 aa17.22■□□□□ 0.35
SLIRP-209ENST00000557342 LARP1Q6PKG0 1096 aaKnown RBP17.22■□□□□ 0.35
SLIRP-209ENST00000557342 GGNBP2Q9H3C7 697 aa17.22■□□□□ 0.35
SLIRP-209ENST00000557342 CGNL1Q0VF96 1302 aa17.21■□□□□ 0.35
SLIRP-209ENST00000557342 AXIN2Q9Y2T1 843 aa17.21■□□□□ 0.35
SLIRP-209ENST00000557342 THRAP3Q9Y2W1 955 aaKnown RBP17.21■□□□□ 0.35
SLIRP-209ENST00000557342 KIF7Q2M1P5 1343 aa17.21■□□□□ 0.34
SLIRP-209ENST00000557342 WDR17Q8IZU2 1322 aa17.21■□□□□ 0.34
SLIRP-209ENST00000557342 WNK3Q9BYP7 1800 aa17.2■□□□□ 0.34
SLIRP-209ENST00000557342 BARGINQ6ZT62 677 aa17.2■□□□□ 0.34
SLIRP-209ENST00000557342 TCP11L2Q8N4U5 519 aa17.2■□□□□ 0.34
SLIRP-209ENST00000557342 PANK3Q9H999 370 aa17.2■□□□□ 0.34
SLIRP-209ENST00000557342 USP35Q9P2H5 1018 aa17.2■□□□□ 0.34
SLIRP-209ENST00000557342 FAM208AQ9UK61 1670 aaKnown RBP17.2■□□□□ 0.34
SLIRP-209ENST00000557342 CSB-PGBD3P0DP91 1061 aa17.19■□□□□ 0.34
SLIRP-209ENST00000557342 TOM1L2Q6ZVM7 507 aa17.19■□□□□ 0.34
SLIRP-209ENST00000557342 BLMP54132 1417 aaPredicted RBP17.19■□□□□ 0.34
SLIRP-209ENST00000557342 KRT27Q7Z3Y8 459 aa17.18■□□□□ 0.34
SLIRP-209ENST00000557342 UPF1Q92900 1129 aaKnown RBP eCLIP17.18■□□□□ 0.34
SLIRP-209ENST00000557342 MAP2P11137 1827 aaKnown RBP17.18■□□□□ 0.34
SLIRP-209ENST00000557342 PARP4Q9UKK3 1724 aaKnown RBP17.18■□□□□ 0.34
SLIRP-209ENST00000557342 IP6K1Q92551 441 aa17.17■□□□□ 0.34
SLIRP-209ENST00000557342 AMPHP49418 695 aa17.16■□□□□ 0.34
SLIRP-209ENST00000557342 MAP3K19Q56UN5 1328 aa17.16■□□□□ 0.34
SLIRP-209ENST00000557342 RTL1A6NKG5 1358 aa17.15■□□□□ 0.34
SLIRP-209ENST00000557342 NSD2O96028 1365 aa17.15■□□□□ 0.34
SLIRP-209ENST00000557342 CCDC7Q96M83 1385 aa17.15■□□□□ 0.34
SLIRP-209ENST00000557342 CARD10Q9BWT7 1032 aa17.15■□□□□ 0.34
SLIRP-209ENST00000557342 ERBB3P21860 1342 aa17.15■□□□□ 0.34
SLIRP-209ENST00000557342 KNSTRNQ9Y448 316 aa17.14■□□□□ 0.33
SLIRP-209ENST00000557342 KIF24Q5T7B8 1368 aa17.14■□□□□ 0.33
SLIRP-209ENST00000557342 HOXC9P31274 260 aa17.13■□□□□ 0.33
SLIRP-209ENST00000557342 RRS1Q15050 365 aaKnown RBP17.13■□□□□ 0.33
SLIRP-209ENST00000557342 ANKRD24Q8TF21 1146 aa17.13■□□□□ 0.33
SLIRP-209ENST00000557342 CDCA7Q9BWT1 371 aaPredicted RBP17.13■□□□□ 0.33
SLIRP-209ENST00000557342 FBLN1P23142 703 aa17.12■□□□□ 0.33
SLIRP-209ENST00000557342 CCDC125Q86Z20 511 aa17.12■□□□□ 0.33
SLIRP-209ENST00000557342 WASHC2AQ641Q2 1341 aa17.12■□□□□ 0.33
SLIRP-209ENST00000557342 PEAK1Q9H792 1746 aa17.11■□□□□ 0.33
SLIRP-209ENST00000557342 RGPD2P0DJD1 1756 aa17.11■□□□□ 0.33
SLIRP-209ENST00000557342 PDE3BQ13370 1112 aa17.11■□□□□ 0.33
SLIRP-209ENST00000557342 NLRP2Q9NX02 1062 aa17.11■□□□□ 0.33
SLIRP-209ENST00000557342 LRRC37A3O60309 1634 aa17.1■□□□□ 0.33
SLIRP-209ENST00000557342 FLT4P35916 1363 aa17.1■□□□□ 0.33
SLIRP-209ENST00000557342 ZEB1P37275 1124 aaPredicted RBP17.09■□□□□ 0.33
SLIRP-209ENST00000557342 LTV1Q96GA3 475 aaPredicted RBP17.09■□□□□ 0.33
SLIRP-209ENST00000557342 SMG6Q86US8 1419 aaKnown RBP17.09■□□□□ 0.33
SLIRP-209ENST00000557342 RGPD1P0DJD0 1748 aa17.09■□□□□ 0.33
SLIRP-209ENST00000557342 INSRP06213 1382 aa17.08■□□□□ 0.32
SLIRP-209ENST00000557342 DDB1Q16531 1140 aa17.08■□□□□ 0.32
SLIRP-209ENST00000557342 DISP2A7MBM2 1401 aa17.07■□□□□ 0.32
SLIRP-209ENST00000557342 SF3B2Q13435 895 aaKnown RBP17.06■□□□□ 0.32
SLIRP-209ENST00000557342 FAM196AQ6ZSG2 479 aa17.06■□□□□ 0.32
SLIRP-209ENST00000557342 MORC1Q86VD1 984 aa17.06■□□□□ 0.32
SLIRP-209ENST00000557342 PER1O15534 1290 aaPredicted RBP17.05■□□□□ 0.32
SLIRP-209ENST00000557342 AMER1Q5JTC6 1135 aaPredicted RBP17.05■□□□□ 0.32
SLIRP-209ENST00000557342 EMILIN1Q9Y6C2 1016 aa17.05■□□□□ 0.32
SLIRP-209ENST00000557342 EXOC5O00471 708 aa17.04■□□□□ 0.32
SLIRP-209ENST00000557342 PPM1GO15355 546 aaPredicted RBP17.04■□□□□ 0.32
SLIRP-209ENST00000557342 IL2RBP14784 551 aa17.04■□□□□ 0.32
SLIRP-209ENST00000557342 TNNT2P45379 298 aaPredicted RBP17.04■□□□□ 0.32
SLIRP-209ENST00000557342 HSP90AB2PQ58FF8 381 aa17.04■□□□□ 0.32
SLIRP-209ENST00000557342 POLKQ9UBT6 870 aa17.04■□□□□ 0.32
SLIRP-209ENST00000557342 SBF2Q86WG5 1849 aa17.03■□□□□ 0.32
SLIRP-209ENST00000557342 FAM182BQ5T319 152 aa17.03■□□□□ 0.32
SLIRP-209ENST00000557342 TNS1Q9HBL0 1735 aaKnown RBP17.02■□□□□ 0.32
SLIRP-209ENST00000557342 OVOS2A0A0G2JMS6 1433 aa17.02■□□□□ 0.31
SLIRP-209ENST00000557342 TNS2Q63HR2 1409 aa17.02■□□□□ 0.31
SLIRP-209ENST00000557342 NPC1L1Q9UHC9 1359 aa17.02■□□□□ 0.31
SLIRP-209ENST00000557342 EP400Q96L91 3159 aa17■□□□□ 0.31
SLIRP-209ENST00000557342 NBPF6Q5VWK0 638 aa17■□□□□ 0.31
SLIRP-209ENST00000557342 NBPF4Q96M43 638 aa17■□□□□ 0.31
SLIRP-209ENST00000557342 CC2D1BQ5T0F9 858 aaKnown RBP16.99■□□□□ 0.31
SLIRP-209ENST00000557342 BAG6P46379 1132 aa16.98■□□□□ 0.31
SLIRP-209ENST00000557342 BCL9O00512 1426 aa16.97■□□□□ 0.31
SLIRP-209ENST00000557342 TRIM37O94972 964 aa16.97■□□□□ 0.31
SLIRP-209ENST00000557342 MARCH10Q8NA82 808 aaPredicted RBP16.97■□□□□ 0.31
SLIRP-209ENST00000557342 SHANK3Q9BYB0 1731 aa16.96■□□□□ 0.31
SLIRP-209ENST00000557342 RAPGEF4Q8WZA2 1011 aa16.96■□□□□ 0.31
SLIRP-209ENST00000557342 KAT6BQ8WYB5 2073 aa16.95■□□□□ 0.3
SLIRP-209ENST00000557342 USHBP1Q8N6Y0 703 aa16.95■□□□□ 0.3
SLIRP-209ENST00000557342 MEGF6O75095 1541 aa16.95■□□□□ 0.3
SLIRP-209ENST00000557342 NCAPD2Q15021 1401 aa16.95■□□□□ 0.3
SLIRP-209ENST00000557342 TATP17735 454 aaPredicted RBP16.94■□□□□ 0.3
SLIRP-209ENST00000557342 EIF4A2Q14240 407 aaKnown RBP16.94■□□□□ 0.3
SLIRP-209ENST00000557342 ZCRB1Q8TBF4 217 aaKnown RBP16.94■□□□□ 0.3
SLIRP-209ENST00000557342 DEFB132Q7Z7B7 95 aa16.93■□□□□ 0.3
SLIRP-209ENST00000557342 EYA1Q99502 592 aa16.93■□□□□ 0.3
SLIRP-209ENST00000557342 NHSQ6T4R5 1651 aa16.93■□□□□ 0.3
SLIRP-209ENST00000557342 PKD1L3Q7Z443 1732 aa16.93■□□□□ 0.3
SLIRP-209ENST00000557342 RGPD3A6NKT7 1758 aaPredicted RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms