RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 KIF20BQ96Q89 1820 aa18.67■□□□□ 0.58
SHMT2-228ENST00000557302 KNSTRNQ9Y448 316 aa18.66■□□□□ 0.58
SHMT2-228ENST00000557302 AXIN2Q9Y2T1 843 aa18.65■□□□□ 0.58
SHMT2-228ENST00000557302 RGS12O14924 1447 aa18.65■□□□□ 0.58
SHMT2-228ENST00000557302 COL5A2P05997 1499 aaPredicted RBP18.65■□□□□ 0.58
SHMT2-228ENST00000557302 ABCC6O95255 1503 aa18.64■□□□□ 0.58
SHMT2-228ENST00000557302 GLI3P10071 1580 aa18.64■□□□□ 0.58
SHMT2-228ENST00000557302 SPATA31A5Q5VU36 1347 aa18.64■□□□□ 0.57
SHMT2-228ENST00000557302 SPATA31A7Q8IWB4 1347 aa18.64■□□□□ 0.57
SHMT2-228ENST00000557302 NSD2O96028 1365 aa18.64■□□□□ 0.57
SHMT2-228ENST00000557302 COL18A1P39060 1754 aa18.63■□□□□ 0.57
SHMT2-228ENST00000557302 LARP1Q6PKG0 1096 aaKnown RBP18.63■□□□□ 0.57
SHMT2-228ENST00000557302 FBLN1P23142 703 aa18.62■□□□□ 0.57
SHMT2-228ENST00000557302 MAP3K19Q56UN5 1328 aa18.62■□□□□ 0.57
SHMT2-228ENST00000557302 SPATA31A1Q5TZJ5 1347 aa18.61■□□□□ 0.57
SHMT2-228ENST00000557302 LTN1O94822 1766 aa18.6■□□□□ 0.57
SHMT2-228ENST00000557302 WDR17Q8IZU2 1322 aa18.6■□□□□ 0.57
SHMT2-228ENST00000557302 CSB-PGBD3P0DP91 1061 aa18.6■□□□□ 0.57
SHMT2-228ENST00000557302 AMPHP49418 695 aa18.6■□□□□ 0.57
SHMT2-228ENST00000557302 RRS1Q15050 365 aaKnown RBP18.6■□□□□ 0.57
SHMT2-228ENST00000557302 IP6K1Q92551 441 aa18.6■□□□□ 0.57
SHMT2-228ENST00000557302 CRB1P82279 1406 aa18.59■□□□□ 0.57
SHMT2-228ENST00000557302 FAM98CQ17RN3 349 aaKnown RBP18.59■□□□□ 0.57
SHMT2-228ENST00000557302 TOM1L2Q6ZVM7 507 aa18.59■□□□□ 0.57
SHMT2-228ENST00000557302 USP35Q9P2H5 1018 aa18.59■□□□□ 0.57
SHMT2-228ENST00000557302 BLMP54132 1417 aaPredicted RBP18.58■□□□□ 0.57
SHMT2-228ENST00000557302 RTL1A6NKG5 1358 aa18.58■□□□□ 0.57
SHMT2-228ENST00000557302 A0A0G2JS52 829 aa18.58■□□□□ 0.56
SHMT2-228ENST00000557302 PER1O15534 1290 aaPredicted RBP18.58■□□□□ 0.56
SHMT2-228ENST00000557302 ONECUT3O60422 494 aaPredicted RBP18.58■□□□□ 0.56
SHMT2-228ENST00000557302 MYT1Q01538 1121 aa18.58■□□□□ 0.56
SHMT2-228ENST00000557302 AMER1Q5JTC6 1135 aaPredicted RBP18.58■□□□□ 0.56
SHMT2-228ENST00000557302 ERBB3P21860 1342 aa18.57■□□□□ 0.56
SHMT2-228ENST00000557302 HOXC9P31274 260 aa18.57■□□□□ 0.56
SHMT2-228ENST00000557302 MORC1Q86VD1 984 aa18.57■□□□□ 0.56
SHMT2-228ENST00000557302 SEPT12Q8IYM1 358 aa18.57■□□□□ 0.56
SHMT2-228ENST00000557302 TCP11L2Q8N4U5 519 aa18.57■□□□□ 0.56
SHMT2-228ENST00000557302 TNNT2P45379 298 aaPredicted RBP18.56■□□□□ 0.56
SHMT2-228ENST00000557302 ANKRD24Q8TF21 1146 aa18.56■□□□□ 0.56
SHMT2-228ENST00000557302 THRAP3Q9Y2W1 955 aaKnown RBP18.56■□□□□ 0.56
SHMT2-228ENST00000557302 ANKRD26Q9UPS8 1709 aa18.56■□□□□ 0.56
SHMT2-228ENST00000557302 KIF24Q5T7B8 1368 aa18.55■□□□□ 0.56
SHMT2-228ENST00000557302 BARGINQ6ZT62 677 aa18.55■□□□□ 0.56
SHMT2-228ENST00000557302 RGPD5Q99666 1765 aa18.55■□□□□ 0.56
SHMT2-228ENST00000557302 FLT4P35916 1363 aa18.55■□□□□ 0.56
SHMT2-228ENST00000557302 LTV1Q96GA3 475 aaPredicted RBP18.54■□□□□ 0.56
SHMT2-228ENST00000557302 CARD10Q9BWT7 1032 aa18.54■□□□□ 0.56
SHMT2-228ENST00000557302 EMILIN1Q9Y6C2 1016 aa18.54■□□□□ 0.56
SHMT2-228ENST00000557302 EP400Q96L91 3159 aa18.53■□□□□ 0.56
SHMT2-228ENST00000557302 PPM1GO15355 546 aaPredicted RBP18.53■□□□□ 0.56
SHMT2-228ENST00000557302 UPF1Q92900 1129 aaKnown RBP eCLIP18.53■□□□□ 0.56
SHMT2-228ENST00000557302 NLRP2Q9NX02 1062 aa18.53■□□□□ 0.56
SHMT2-228ENST00000557302 NPC1L1Q9UHC9 1359 aa18.53■□□□□ 0.56
SHMT2-228ENST00000557302 CC2D1BQ5T0F9 858 aaKnown RBP18.52■□□□□ 0.56
SHMT2-228ENST00000557302 POLKQ9UBT6 870 aa18.52■□□□□ 0.56
SHMT2-228ENST00000557302 HSP90AB2PQ58FF8 381 aa18.51■□□□□ 0.55
SHMT2-228ENST00000557302 INSRP06213 1382 aa18.51■□□□□ 0.55
SHMT2-228ENST00000557302 THSD7AQ9UPZ6 1657 aa18.5■□□□□ 0.55
SHMT2-228ENST00000557302 SMG6Q86US8 1419 aaKnown RBP18.5■□□□□ 0.55
SHMT2-228ENST00000557302 PEAK1Q9H792 1746 aa18.5■□□□□ 0.55
SHMT2-228ENST00000557302 KRT27Q7Z3Y8 459 aa18.49■□□□□ 0.55
SHMT2-228ENST00000557302 CNGB1Q14028 1251 aaPredicted RBP18.48■□□□□ 0.55
SHMT2-228ENST00000557302 CDCA7Q9BWT1 371 aaPredicted RBP18.48■□□□□ 0.55
SHMT2-228ENST00000557302 MAP2P11137 1827 aaKnown RBP18.46■□□□□ 0.55
SHMT2-228ENST00000557302 FAM208AQ9UK61 1670 aaKnown RBP18.46■□□□□ 0.55
SHMT2-228ENST00000557302 BRWD3Q6RI45 1802 aa18.45■□□□□ 0.54
SHMT2-228ENST00000557302 DISP2A7MBM2 1401 aa18.44■□□□□ 0.54
SHMT2-228ENST00000557302 DDX10Q13206 875 aaKnown RBP18.44■□□□□ 0.54
SHMT2-228ENST00000557302 PDE3BQ13370 1112 aa18.44■□□□□ 0.54
SHMT2-228ENST00000557302 DDB1Q16531 1140 aa18.44■□□□□ 0.54
SHMT2-228ENST00000557302 SRCAPQ6ZRS2 3230 aa18.44■□□□□ 0.54
SHMT2-228ENST00000557302 IL2RBP14784 551 aa18.43■□□□□ 0.54
SHMT2-228ENST00000557302 NBPF6Q5VWK0 638 aa18.43■□□□□ 0.54
SHMT2-228ENST00000557302 NBPF4Q96M43 638 aa18.43■□□□□ 0.54
SHMT2-228ENST00000557302 PARP4Q9UKK3 1724 aaKnown RBP18.43■□□□□ 0.54
SHMT2-228ENST00000557302 WNK3Q9BYP7 1800 aa18.42■□□□□ 0.54
SHMT2-228ENST00000557302 USHBP1Q8N6Y0 703 aa18.41■□□□□ 0.54
SHMT2-228ENST00000557302 EXOC5O00471 708 aa18.4■□□□□ 0.54
SHMT2-228ENST00000557302 MTHFSP49914 203 aa18.4■□□□□ 0.54
SHMT2-228ENST00000557302 EIF4A2Q14240 407 aaKnown RBP18.4■□□□□ 0.54
SHMT2-228ENST00000557302 LRRC37A3O60309 1634 aa18.4■□□□□ 0.54
SHMT2-228ENST00000557302 ZNF316A6NFI3 1004 aaPredicted RBP18.39■□□□□ 0.53
SHMT2-228ENST00000557302 FAM182BQ5T319 152 aa18.39■□□□□ 0.53
SHMT2-228ENST00000557302 TNS2Q63HR2 1409 aa18.39■□□□□ 0.53
SHMT2-228ENST00000557302 EYA1Q99502 592 aa18.38■□□□□ 0.53
SHMT2-228ENST00000557302 RGPD2P0DJD1 1756 aa18.37■□□□□ 0.53
SHMT2-228ENST00000557302 FAM196AQ6ZSG2 479 aa18.37■□□□□ 0.53
SHMT2-228ENST00000557302 RAPGEF4Q8WZA2 1011 aa18.37■□□□□ 0.53
SHMT2-228ENST00000557302 MEGF6O75095 1541 aa18.35■□□□□ 0.53
SHMT2-228ENST00000557302 OVOS2A0A0G2JMS6 1433 aa18.35■□□□□ 0.53
SHMT2-228ENST00000557302 NCAPD2Q15021 1401 aa18.35■□□□□ 0.53
SHMT2-228ENST00000557302 CCDC125Q86Z20 511 aa18.35■□□□□ 0.53
SHMT2-228ENST00000557302 TATP17735 454 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-228ENST00000557302 MARCH10Q8NA82 808 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-228ENST00000557302 PARD3Q8TEW0 1356 aa18.33■□□□□ 0.53
SHMT2-228ENST00000557302 IGSF1Q8N6C5 1336 aa18.33■□□□□ 0.53
SHMT2-228ENST00000557302 PPP2R1AP30153 589 aa18.33■□□□□ 0.52
SHMT2-228ENST00000557302 IL13P35225 146 aa18.33■□□□□ 0.52
SHMT2-228ENST00000557302 ZCRB1Q8TBF4 217 aaKnown RBP18.33■□□□□ 0.52
SHMT2-228ENST00000557302 DIAPH1O60610 1272 aaKnown RBP18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms