RNA–Protein interactions for RNA: ENST00000557084.1

SYNE2-226, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 689 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-226ENST00000557084 TCP11L2Q8N4U5 519 aa16.61■□□□□ 0.25
SYNE2-226ENST00000557084 CD163L1Q9NR16 1453 aa16.61■□□□□ 0.25
SYNE2-226ENST00000557084 SLIT3O75094 1523 aa16.6■□□□□ 0.25
SYNE2-226ENST00000557084 CAMTA1Q9Y6Y1 1673 aa16.6■□□□□ 0.25
SYNE2-226ENST00000557084 TOM1L2Q6ZVM7 507 aa16.6■□□□□ 0.25
SYNE2-226ENST00000557084 EIF4G2P78344 907 aaKnown RBP eCLIP16.59■□□□□ 0.25
SYNE2-226ENST00000557084 COG3Q96JB2 828 aa16.59■□□□□ 0.25
SYNE2-226ENST00000557084 POLR3GLQ9BT43 218 aa16.59■□□□□ 0.25
SYNE2-226ENST00000557084 THRAP3Q9Y2W1 955 aaKnown RBP16.59■□□□□ 0.25
SYNE2-226ENST00000557084 USP31Q70CQ4 1352 aa16.59■□□□□ 0.25
SYNE2-226ENST00000557084 PDE3BQ13370 1112 aa16.58■□□□□ 0.24
SYNE2-226ENST00000557084 BARGINQ6ZT62 677 aa16.58■□□□□ 0.24
SYNE2-226ENST00000557084 MON2Q7Z3U7 1717 aa16.58■□□□□ 0.24
SYNE2-226ENST00000557084 COL5A2P05997 1499 aaPredicted RBP16.57■□□□□ 0.24
SYNE2-226ENST00000557084 ANKRD36BQ8N2N9 1353 aa16.57■□□□□ 0.24
SYNE2-226ENST00000557084 AXIN2Q9Y2T1 843 aa16.57■□□□□ 0.24
SYNE2-226ENST00000557084 BLMP54132 1417 aaPredicted RBP16.56■□□□□ 0.24
SYNE2-226ENST00000557084 CRB1P82279 1406 aa16.56■□□□□ 0.24
SYNE2-226ENST00000557084 DCAF8L1A6NGE4 600 aa16.56■□□□□ 0.24
SYNE2-226ENST00000557084 WDR17Q8IZU2 1322 aa16.55■□□□□ 0.24
SYNE2-226ENST00000557084 FAM182BQ5T319 152 aa16.55■□□□□ 0.24
SYNE2-226ENST00000557084 LMO7Q8WWI1 1683 aa16.55■□□□□ 0.24
SYNE2-226ENST00000557084 BRWD3Q6RI45 1802 aa16.54■□□□□ 0.24
SYNE2-226ENST00000557084 HSPA5P11021 654 aaKnown RBP16.54■□□□□ 0.24
SYNE2-226ENST00000557084 FAM196AQ6ZSG2 479 aa16.53■□□□□ 0.24
SYNE2-226ENST00000557084 NFAT5O94916 1531 aa16.52■□□□□ 0.24
SYNE2-226ENST00000557084 BAG6P46379 1132 aa16.51■□□□□ 0.23
SYNE2-226ENST00000557084 CDCA7Q9BWT1 371 aaPredicted RBP16.51■□□□□ 0.23
SYNE2-226ENST00000557084 CARD10Q9BWT7 1032 aa16.51■□□□□ 0.23
SYNE2-226ENST00000557084 GGNBP2Q9H3C7 697 aa16.51■□□□□ 0.23
SYNE2-226ENST00000557084 NLRP2Q9NX02 1062 aa16.51■□□□□ 0.23
SYNE2-226ENST00000557084 THSD7AQ9UPZ6 1657 aa16.5■□□□□ 0.23
SYNE2-226ENST00000557084 AMPHP49418 695 aa16.5■□□□□ 0.23
SYNE2-226ENST00000557084 DDB1Q16531 1140 aa16.5■□□□□ 0.23
SYNE2-226ENST00000557084 DEFB132Q7Z7B7 95 aa16.5■□□□□ 0.23
SYNE2-226ENST00000557084 OVOS2A0A0J9YW53 1432 aa16.5■□□□□ 0.23
SYNE2-226ENST00000557084 OVOS2Q6IE36 1432 aa16.5■□□□□ 0.23
SYNE2-226ENST00000557084 FYB1O15117 783 aa16.49■□□□□ 0.23
SYNE2-226ENST00000557084 ANKRD24Q8TF21 1146 aa16.49■□□□□ 0.23
SYNE2-226ENST00000557084 TRIM37O94972 964 aa16.48■□□□□ 0.23
SYNE2-226ENST00000557084 LTV1Q96GA3 475 aaPredicted RBP16.48■□□□□ 0.23
SYNE2-226ENST00000557084 COL18A1P39060 1754 aa16.47■□□□□ 0.23
SYNE2-226ENST00000557084 ABCC6O95255 1503 aa16.47■□□□□ 0.23
SYNE2-226ENST00000557084 SRCAPQ6ZRS2 3230 aa16.47■□□□□ 0.23
SYNE2-226ENST00000557084 C11orf95C9JLR9 678 aaPredicted RBP16.47■□□□□ 0.23
SYNE2-226ENST00000557084 IP6K1Q92551 441 aa16.47■□□□□ 0.23
SYNE2-226ENST00000557084 CCDC7Q96M83 1385 aa16.47■□□□□ 0.23
SYNE2-226ENST00000557084 ERBB3P21860 1342 aa16.46■□□□□ 0.23
SYNE2-226ENST00000557084 EXOC5O00471 708 aa16.46■□□□□ 0.23
SYNE2-226ENST00000557084 CARD14Q9BXL6 1004 aa16.46■□□□□ 0.23
SYNE2-226ENST00000557084 CGNL1Q0VF96 1302 aa16.45■□□□□ 0.22
SYNE2-226ENST00000557084 MAP3K19Q56UN5 1328 aa16.45■□□□□ 0.22
SYNE2-226ENST00000557084 NSD3Q9BZ95 1437 aa16.45■□□□□ 0.22
SYNE2-226ENST00000557084 FBLN1P23142 703 aa16.45■□□□□ 0.22
SYNE2-226ENST00000557084 USP54Q70EL1 1684 aa16.45■□□□□ 0.22
SYNE2-226ENST00000557084 APBA3O96018 575 aa16.44■□□□□ 0.22
SYNE2-226ENST00000557084 RRS1Q15050 365 aaKnown RBP16.44■□□□□ 0.22
SYNE2-226ENST00000557084 HOXC9P31274 260 aa16.43■□□□□ 0.22
SYNE2-226ENST00000557084 EN1Q05925 392 aaPredicted RBP16.43■□□□□ 0.22
SYNE2-226ENST00000557084 RGPD5Q99666 1765 aa16.42■□□□□ 0.22
SYNE2-226ENST00000557084 IL2RBP14784 551 aa16.42■□□□□ 0.22
SYNE2-226ENST00000557084 LTN1O94822 1766 aa16.41■□□□□ 0.22
SYNE2-226ENST00000557084 PANK3Q9H999 370 aa16.41■□□□□ 0.22
SYNE2-226ENST00000557084 OVOS2A0A0G2JMS6 1433 aa16.41■□□□□ 0.22
SYNE2-226ENST00000557084 PPM1GO15355 546 aaPredicted RBP16.4■□□□□ 0.22
SYNE2-226ENST00000557084 RTL1A6NKG5 1358 aa16.39■□□□□ 0.21
SYNE2-226ENST00000557084 PARP4Q9UKK3 1724 aaKnown RBP16.39■□□□□ 0.21
SYNE2-226ENST00000557084 SMG6Q86US8 1419 aaKnown RBP16.39■□□□□ 0.21
SYNE2-226ENST00000557084 MARCH10Q8NA82 808 aaPredicted RBP16.39■□□□□ 0.21
SYNE2-226ENST00000557084 MYOM1P52179 1685 aa16.38■□□□□ 0.21
SYNE2-226ENST00000557084 RGPD1P0DJD0 1748 aa16.38■□□□□ 0.21
SYNE2-226ENST00000557084 TNNT2P45379 298 aaPredicted RBP16.37■□□□□ 0.21
SYNE2-226ENST00000557084 EZH2Q15910 746 aaKnown RBP16.37■□□□□ 0.21
SYNE2-226ENST00000557084 DISP2A7MBM2 1401 aa16.36■□□□□ 0.21
SYNE2-226ENST00000557084 KNSTRNQ9Y448 316 aa16.36■□□□□ 0.21
SYNE2-226ENST00000557084 FLT4P35916 1363 aa16.36■□□□□ 0.21
SYNE2-226ENST00000557084 KIF20BQ96Q89 1820 aa16.35■□□□□ 0.21
SYNE2-226ENST00000557084 LRRC37A3O60309 1634 aa16.35■□□□□ 0.21
SYNE2-226ENST00000557084 HSP90AB2PQ58FF8 381 aa16.35■□□□□ 0.21
SYNE2-226ENST00000557084 CAMKK2Q96RR4 588 aa16.35■□□□□ 0.21
SYNE2-226ENST00000557084 BCL11BQ9C0K0 894 aaPredicted RBP16.35■□□□□ 0.21
SYNE2-226ENST00000557084 EMILIN1Q9Y6C2 1016 aa16.35■□□□□ 0.21
SYNE2-226ENST00000557084 TNS2Q63HR2 1409 aa16.35■□□□□ 0.21
SYNE2-226ENST00000557084 DDX54Q8TDD1 881 aaKnown RBP16.34■□□□□ 0.21
SYNE2-226ENST00000557084 KIF24Q5T7B8 1368 aa16.34■□□□□ 0.21
SYNE2-226ENST00000557084 PARD3Q8TEW0 1356 aa16.34■□□□□ 0.21
SYNE2-226ENST00000557084 RAPGEF4Q8WZA2 1011 aa16.33■□□□□ 0.2
SYNE2-226ENST00000557084 KIF7Q2M1P5 1343 aa16.33■□□□□ 0.2
SYNE2-226ENST00000557084 INSRP06213 1382 aa16.33■□□□□ 0.2
SYNE2-226ENST00000557084 PSDA5PKW4 1024 aaPredicted RBP16.32■□□□□ 0.2
SYNE2-226ENST00000557084 NBPF14Q5TI25 921 aa16.32■□□□□ 0.2
SYNE2-226ENST00000557084 NBPF6Q5VWK0 638 aa16.32■□□□□ 0.2
SYNE2-226ENST00000557084 MORC1Q86VD1 984 aa16.32■□□□□ 0.2
SYNE2-226ENST00000557084 USHBP1Q8N6Y0 703 aa16.32■□□□□ 0.2
SYNE2-226ENST00000557084 NBPF4Q96M43 638 aa16.32■□□□□ 0.2
SYNE2-226ENST00000557084 WNK3Q9BYP7 1800 aa16.31■□□□□ 0.2
SYNE2-226ENST00000557084 BCL9O00512 1426 aa16.3■□□□□ 0.2
SYNE2-226ENST00000557084 NSD2O96028 1365 aa16.3■□□□□ 0.2
SYNE2-226ENST00000557084 TATP17735 454 aaPredicted RBP16.3■□□□□ 0.2
SYNE2-226ENST00000557084 R3HDM1Q15032 1099 aaKnown RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms