RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 COL5A2P05997 1499 aaPredicted RBP13.7□□□□□ -0.22
SYNE2-224ENST00000557024 ZBTB7CA1YPR0 619 aa13.7□□□□□ -0.22
SYNE2-224ENST00000557024 CDK19Q9BWU1 502 aa13.7□□□□□ -0.22
SYNE2-224ENST00000557024 FHDC1Q9C0D6 1143 aaPredicted RBP13.7□□□□□ -0.22
SYNE2-224ENST00000557024 C1QTNF8P60827 252 aa13.69□□□□□ -0.22
SYNE2-224ENST00000557024 PROM2Q8N271 834 aa13.69□□□□□ -0.22
SYNE2-224ENST00000557024 DCAF11Q8TEB1 546 aa13.69□□□□□ -0.22
SYNE2-224ENST00000557024 MYOM1P52179 1685 aa13.69□□□□□ -0.22
SYNE2-224ENST00000557024 CASZ1Q86V15 1759 aa13.68□□□□□ -0.22
SYNE2-224ENST00000557024 CRB1P82279 1406 aa13.68□□□□□ -0.22
SYNE2-224ENST00000557024 GCP02774 474 aa13.68□□□□□ -0.22
SYNE2-224ENST00000557024 DDB1Q16531 1140 aa13.68□□□□□ -0.22
SYNE2-224ENST00000557024 SYT17Q9BSW7 474 aa13.68□□□□□ -0.22
SYNE2-224ENST00000557024 CCDC61Q9Y6R9 512 aa13.68□□□□□ -0.22
SYNE2-224ENST00000557024 PEAK1Q9H792 1746 aa13.67□□□□□ -0.22
SYNE2-224ENST00000557024 PARP4Q9UKK3 1724 aaKnown RBP13.67□□□□□ -0.22
SYNE2-224ENST00000557024 NLRP13Q86W25 1043 aa13.67□□□□□ -0.22
SYNE2-224ENST00000557024 ITSN1Q15811 1721 aa13.67□□□□□ -0.22
SYNE2-224ENST00000557024 UTRNP46939 3433 aa13.66□□□□□ -0.22
SYNE2-224ENST00000557024 PLEKHG3A1L390 1219 aa13.66□□□□□ -0.22
SYNE2-224ENST00000557024 STK32BQ9NY57 414 aa13.66□□□□□ -0.22
SYNE2-224ENST00000557024 IFFO2Q5TF58 517 aa13.65□□□□□ -0.22
SYNE2-224ENST00000557024 TOM1L2Q6ZVM7 507 aa13.65□□□□□ -0.22
SYNE2-224ENST00000557024 MARCH10Q8NA82 808 aaPredicted RBP13.65□□□□□ -0.22
SYNE2-224ENST00000557024 RTN4Q9NQC3 1192 aaKnown RBP13.65□□□□□ -0.22
SYNE2-224ENST00000557024 RGPD3A6NKT7 1758 aaPredicted RBP13.65□□□□□ -0.22
SYNE2-224ENST00000557024 RGPD4Q7Z3J3 1758 aa13.65□□□□□ -0.22
SYNE2-224ENST00000557024 LRRC37A3O60309 1634 aa13.64□□□□□ -0.23
SYNE2-224ENST00000557024 SLC15A2Q16348 729 aa13.64□□□□□ -0.23
SYNE2-224ENST00000557024 TXNRD1Q16881 649 aa13.64□□□□□ -0.23
SYNE2-224ENST00000557024 AATKQ6ZMQ8 1374 aa13.63□□□□□ -0.23
SYNE2-224ENST00000557024 MTFR1LQ9H019 292 aa13.63□□□□□ -0.23
SYNE2-224ENST00000557024 TOPAZ1Q8N9V7 1692 aa13.63□□□□□ -0.23
SYNE2-224ENST00000557024 ARHGEF28Q8N1W1 1705 aaKnown RBP13.62□□□□□ -0.23
SYNE2-224ENST00000557024 MKRN4PQ13434 485 aaPredicted RBP13.62□□□□□ -0.23
SYNE2-224ENST00000557024 SGIP1Q9BQI5 828 aa13.62□□□□□ -0.23
SYNE2-224ENST00000557024 BCL9O00512 1426 aa13.6□□□□□ -0.23
SYNE2-224ENST00000557024 NLRP6P59044 892 aa13.6□□□□□ -0.23
SYNE2-224ENST00000557024 SRPK2P78362 688 aaKnown RBP13.6□□□□□ -0.23
SYNE2-224ENST00000557024 POLA2Q14181 598 aa13.6□□□□□ -0.23
SYNE2-224ENST00000557024 PPIP5K1Q6PFW1 1433 aa13.6□□□□□ -0.23
SYNE2-224ENST00000557024 ARXQ96QS3 562 aa13.6□□□□□ -0.23
SYNE2-224ENST00000557024 WDR17Q8IZU2 1322 aa13.6□□□□□ -0.23
SYNE2-224ENST00000557024 STAC3Q96MF2 364 aa13.59□□□□□ -0.23
SYNE2-224ENST00000557024 CDCA7Q9BWT1 371 aaPredicted RBP13.59□□□□□ -0.23
SYNE2-224ENST00000557024 AXIN2Q9Y2T1 843 aa13.59□□□□□ -0.23
SYNE2-224ENST00000557024 SBF2Q86WG5 1849 aa13.58□□□□□ -0.24
SYNE2-224ENST00000557024 GIGYF1O75420 1035 aaPredicted RBP13.58□□□□□ -0.24
SYNE2-224ENST00000557024 GPR162Q16538 588 aa13.58□□□□□ -0.24
SYNE2-224ENST00000557024 CSB-PGBD3P0DP91 1061 aa13.57□□□□□ -0.24
SYNE2-224ENST00000557024 CABP2Q9NPB3 220 aa13.57□□□□□ -0.24
SYNE2-224ENST00000557024 SLIT3O75094 1523 aa13.57□□□□□ -0.24
SYNE2-224ENST00000557024 CEP350Q5VT06 3117 aa13.56□□□□□ -0.24
SYNE2-224ENST00000557024 AMER1Q5JTC6 1135 aaPredicted RBP13.56□□□□□ -0.24
SYNE2-224ENST00000557024 BRD4O60885 1362 aaPredicted RBP13.56□□□□□ -0.24
SYNE2-224ENST00000557024 MAP3K5Q99683 1374 aa13.56□□□□□ -0.24
SYNE2-224ENST00000557024 RAB3GAP2Q9H2M9 1393 aa13.56□□□□□ -0.24
SYNE2-224ENST00000557024 USP6P35125 1406 aa13.56□□□□□ -0.24
SYNE2-224ENST00000557024 CPSF1Q10570 1443 aaKnown RBP13.56□□□□□ -0.24
SYNE2-224ENST00000557024 EXOC5O00471 708 aa13.55□□□□□ -0.24
SYNE2-224ENST00000557024 SOX12O15370 315 aa13.55□□□□□ -0.24
SYNE2-224ENST00000557024 PELP1Q8IZL8 1130 aaKnown RBP13.55□□□□□ -0.24
SYNE2-224ENST00000557024 KLHL34Q8N239 644 aa13.55□□□□□ -0.24
SYNE2-224ENST00000557024 CARD10Q9BWT7 1032 aa13.55□□□□□ -0.24
SYNE2-224ENST00000557024 CABP1Q9NZU7 370 aa13.55□□□□□ -0.24
SYNE2-224ENST00000557024 ZNF827Q17R98 1081 aa13.54□□□□□ -0.24
SYNE2-224ENST00000557024 ACSBG1Q96GR2 724 aa13.54□□□□□ -0.24
SYNE2-224ENST00000557024 NBPF1Q3BBV0 1214 aa13.53□□□□□ -0.24
SYNE2-224ENST00000557024 ARHGEF25Q86VW2 580 aa13.53□□□□□ -0.24
SYNE2-224ENST00000557024 SPDYE4A6NLX3 237 aa13.52□□□□□ -0.25
SYNE2-224ENST00000557024 CENPJQ9HC77 1338 aaPredicted RBP13.52□□□□□ -0.25
SYNE2-224ENST00000557024 TNS2Q63HR2 1409 aa13.52□□□□□ -0.25
SYNE2-224ENST00000557024 WNK3Q9BYP7 1800 aa13.51□□□□□ -0.25
SYNE2-224ENST00000557024 COL18A1P39060 1754 aa13.51□□□□□ -0.25
SYNE2-224ENST00000557024 AKAP12Q02952 1782 aa13.5□□□□□ -0.25
SYNE2-224ENST00000557024 LRRC4BQ9NT99 713 aa13.5□□□□□ -0.25
SYNE2-224ENST00000557024 CHD4Q14839 1912 aa13.5□□□□□ -0.25
SYNE2-224ENST00000557024 PAPPAQ13219 1627 aa13.5□□□□□ -0.25
SYNE2-224ENST00000557024 CCDC7Q96M83 1385 aa13.49□□□□□ -0.25
SYNE2-224ENST00000557024 KCNH5Q8NCM2 988 aa13.49□□□□□ -0.25
SYNE2-224ENST00000557024 PIK3C2AO00443 1686 aa13.49□□□□□ -0.25
SYNE2-224ENST00000557024 GOLGB1Q14789 3259 aaKnown RBP13.49□□□□□ -0.25
SYNE2-224ENST00000557024 POLD1P28340 1107 aa13.48□□□□□ -0.25
SYNE2-224ENST00000557024 NLGN2Q8NFZ4 835 aa13.48□□□□□ -0.25
SYNE2-224ENST00000557024 NHSQ6T4R5 1651 aa13.47□□□□□ -0.25
SYNE2-224ENST00000557024 TTC21BQ7Z4L5 1316 aa13.47□□□□□ -0.25
SYNE2-224ENST00000557024 ABCC6O95255 1503 aa13.46□□□□□ -0.25
SYNE2-224ENST00000557024 SLC16A10Q8TF71 515 aa13.46□□□□□ -0.25
SYNE2-224ENST00000557024 AKT1S1Q96B36 256 aa13.46□□□□□ -0.25
SYNE2-224ENST00000557024 NLRP2Q9NX02 1062 aa13.46□□□□□ -0.25
SYNE2-224ENST00000557024 SHANK3Q9BYB0 1731 aa13.46□□□□□ -0.25
SYNE2-224ENST00000557024 TRPM1Q7Z4N2 1603 aa13.46□□□□□ -0.26
SYNE2-224ENST00000557024 PNPLA7Q6ZV29 1317 aa13.45□□□□□ -0.26
SYNE2-224ENST00000557024 YBX3P16989 372 aaKnown RBP eCLIP13.45□□□□□ -0.26
SYNE2-224ENST00000557024 NFAT5O94916 1531 aa13.44□□□□□ -0.26
SYNE2-224ENST00000557024 IL2RBP14784 551 aa13.44□□□□□ -0.26
SYNE2-224ENST00000557024 QRICH2Q9H0J4 1663 aa13.44□□□□□ -0.26
SYNE2-224ENST00000557024 KCNQ4P56696 695 aa13.43□□□□□ -0.26
SYNE2-224ENST00000557024 TFCP2L1Q9NZI6 479 aa13.43□□□□□ -0.26
SYNE2-224ENST00000557024 KIAA1210Q9ULL0 1709 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms