RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 KRT76Q01546 638 aa9.81□□□□□ -0.84
PRPF39-210ENST00000556718 PPP1R26Q5T8A7 1209 aaPredicted RBP9.81□□□□□ -0.84
PRPF39-210ENST00000556718 TTLL8A6PVC2 850 aa9.8□□□□□ -0.84
PRPF39-210ENST00000556718 GPKOWQ92917 476 aaPredicted RBP eCLIP9.8□□□□□ -0.84
PRPF39-210ENST00000556718 ARHGAP9Q9BRR9 750 aa9.79□□□□□ -0.84
PRPF39-210ENST00000556718 RSPH6AQ9H0K4 717 aa9.79□□□□□ -0.84
PRPF39-210ENST00000556718 PTSQ03393 145 aa9.78□□□□□ -0.84
PRPF39-210ENST00000556718 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.78□□□□□ -0.84
PRPF39-210ENST00000556718 PDXDC2PQ6P474 469 aa9.78□□□□□ -0.84
PRPF39-210ENST00000556718 Q6ZVU0 165 aa9.78□□□□□ -0.84
PRPF39-210ENST00000556718 FKBPLQ9UIM3 349 aa9.78□□□□□ -0.84
PRPF39-210ENST00000556718 NR6A1Q15406 480 aa9.77□□□□□ -0.85
PRPF39-210ENST00000556718 PROCA1Q8NCQ7 364 aaPredicted RBP9.77□□□□□ -0.85
PRPF39-210ENST00000556718 KCTD15Q96SI1 283 aaPredicted RBP9.77□□□□□ -0.85
PRPF39-210ENST00000556718 OCSTAMPQ9BR26 566 aa9.77□□□□□ -0.85
PRPF39-210ENST00000556718 SPINT1O43278 529 aa9.76□□□□□ -0.85
PRPF39-210ENST00000556718 AGBL1Q96MI9 1066 aa9.76□□□□□ -0.85
PRPF39-210ENST00000556718 PGPEP1Q9NXJ5 209 aa9.76□□□□□ -0.85
PRPF39-210ENST00000556718 SLC10A4Q96EP9 437 aa9.75□□□□□ -0.85
PRPF39-210ENST00000556718 CNTNAP3BQ96NU0 1288 aa9.75□□□□□ -0.85
PRPF39-210ENST00000556718 CNTNAP3Q9BZ76 1288 aa9.75□□□□□ -0.85
PRPF39-210ENST00000556718 GSK3AP49840 483 aa9.74□□□□□ -0.85
PRPF39-210ENST00000556718 INTS6LQ5JSJ4 861 aaKnown RBP9.74□□□□□ -0.85
PRPF39-210ENST00000556718 ZBTB33Q86T24 672 aa9.73□□□□□ -0.85
PRPF39-210ENST00000556718 CCDC155Q8N6L0 562 aa9.73□□□□□ -0.85
PRPF39-210ENST00000556718 CTSOP43234 321 aaPredicted RBP9.72□□□□□ -0.85
PRPF39-210ENST00000556718 SKIV2LQ15477 1246 aaKnown RBP9.72□□□□□ -0.85
PRPF39-210ENST00000556718 EPS8L1Q8TE68 723 aa9.72□□□□□ -0.85
PRPF39-210ENST00000556718 COL25A1Q9BXS0 654 aaPredicted RBP9.72□□□□□ -0.85
PRPF39-210ENST00000556718 GPBP1L1Q9HC44 474 aaPredicted RBP9.72□□□□□ -0.85
PRPF39-210ENST00000556718 SLC35F4A4IF30 521 aa9.71□□□□□ -0.86
PRPF39-210ENST00000556718 RELBQ01201 579 aa9.71□□□□□ -0.86
PRPF39-210ENST00000556718 RNFT1Q5M7Z0 435 aa9.71□□□□□ -0.86
PRPF39-210ENST00000556718 INSM2Q96T92 566 aaPredicted RBP9.71□□□□□ -0.86
PRPF39-210ENST00000556718 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.71□□□□□ -0.86
PRPF39-210ENST00000556718 KCNMA1Q12791 1236 aa9.7□□□□□ -0.86
PRPF39-210ENST00000556718 NANOS1Q8WY41 292 aaKnown RBP9.7□□□□□ -0.86
PRPF39-210ENST00000556718 TMPRSS4Q9NRS4 437 aa9.7□□□□□ -0.86
PRPF39-210ENST00000556718 SH3D19Q5HYK7 790 aa9.69□□□□□ -0.86
PRPF39-210ENST00000556718 PPP2R2DQ66LE6 453 aa9.69□□□□□ -0.86
PRPF39-210ENST00000556718 ADAM32Q8TC27 787 aa9.69□□□□□ -0.86
PRPF39-210ENST00000556718 FAM117AQ9C073 453 aa9.69□□□□□ -0.86
PRPF39-210ENST00000556718 ZNF395Q9H8N7 513 aaPredicted RBP9.69□□□□□ -0.86
PRPF39-210ENST00000556718 CDV3Q9UKY7 258 aaKnown RBP9.69□□□□□ -0.86
PRPF39-210ENST00000556718 ZC3H4Q9UPT8 1303 aaKnown RBP9.68□□□□□ -0.86
PRPF39-210ENST00000556718 AP1G2O75843 785 aa9.68□□□□□ -0.86
PRPF39-210ENST00000556718 DHX9Q08211 1270 aaKnown RBP9.68□□□□□ -0.86
PRPF39-210ENST00000556718 KCTD17Q8N5Z5 321 aa9.68□□□□□ -0.86
PRPF39-210ENST00000556718 KDM4CQ9H3R0 1056 aa9.68□□□□□ -0.86
PRPF39-210ENST00000556718 HMX1Q9NP08 348 aaPredicted RBP9.68□□□□□ -0.86
PRPF39-210ENST00000556718 RAB15P59190 212 aa9.67□□□□□ -0.86
PRPF39-210ENST00000556718 PTK2Q05397 1052 aa9.67□□□□□ -0.86
PRPF39-210ENST00000556718 VWA5B2Q8N398 1253 aa9.67□□□□□ -0.86
PRPF39-210ENST00000556718 ATP1B4Q9UN42 357 aaPredicted RBP9.67□□□□□ -0.86
PRPF39-210ENST00000556718 ADAMTS8Q9UP79 889 aa9.67□□□□□ -0.86
PRPF39-210ENST00000556718 ITGA6P23229 1130 aa9.66□□□□□ -0.86
PRPF39-210ENST00000556718 ZNF784Q8NCA9 323 aaPredicted RBP9.66□□□□□ -0.86
PRPF39-210ENST00000556718 WHAMMQ8TF30 809 aa9.66□□□□□ -0.86
PRPF39-210ENST00000556718 POLMQ9NP87 494 aaPredicted RBP9.66□□□□□ -0.86
PRPF39-210ENST00000556718 SENP3-EIF4A1A0A087X0R7 540 aa9.65□□□□□ -0.86
PRPF39-210ENST00000556718 CDC14CA4D256 554 aa9.65□□□□□ -0.86
PRPF39-210ENST00000556718 ADD1P35611 737 aaKnown RBP9.65□□□□□ -0.86
PRPF39-210ENST00000556718 ZNF385CQ66K41 422 aaPredicted RBP9.65□□□□□ -0.86
PRPF39-210ENST00000556718 RNF217Q8TC41 542 aa9.65□□□□□ -0.86
PRPF39-210ENST00000556718 LOC100996750A0A140TA64 210 aa9.64□□□□□ -0.87
PRPF39-210ENST00000556718 KDF1Q8NAX2 398 aaPredicted RBP9.64□□□□□ -0.87
PRPF39-210ENST00000556718 KRTAP4-6Q9BYQ5 205 aa9.64□□□□□ -0.87
PRPF39-210ENST00000556718 GPSM3Q9Y4H4 160 aa9.64□□□□□ -0.87
PRPF39-210ENST00000556718 LILRA1O75019 489 aa9.63□□□□□ -0.87
PRPF39-210ENST00000556718 BCANQ96GW7 911 aa9.63□□□□□ -0.87
PRPF39-210ENST00000556718 ERVH48-1M5A8F1 160 aa9.62□□□□□ -0.87
PRPF39-210ENST00000556718 ADH1AP07327 375 aa9.62□□□□□ -0.87
PRPF39-210ENST00000556718 USP17L8P0C7I0 530 aa9.62□□□□□ -0.87
PRPF39-210ENST00000556718 RASSF7Q02833 373 aa9.62□□□□□ -0.87
PRPF39-210ENST00000556718 FOXD4L5Q5VV16 416 aaPredicted RBP9.62□□□□□ -0.87
PRPF39-210ENST00000556718 SV2AQ7L0J3 742 aa9.61□□□□□ -0.87
PRPF39-210ENST00000556718 SVOPQ8N4V2 548 aa9.61□□□□□ -0.87
PRPF39-210ENST00000556718 DDRGK1Q96HY6 314 aa9.61□□□□□ -0.87
PRPF39-210ENST00000556718 SLURP2P0DP57 97 aa9.6□□□□□ -0.87
PRPF39-210ENST00000556718 NBPF20Q3BBV1 942 aa9.6□□□□□ -0.87
PRPF39-210ENST00000556718 DZIP3Q86Y13 1208 aaKnown RBP9.6□□□□□ -0.87
PRPF39-210ENST00000556718 TMEM151AQ8N4L1 468 aa9.6□□□□□ -0.87
PRPF39-210ENST00000556718 CUEDC1Q9NWM3 386 aaPredicted RBP9.6□□□□□ -0.87
PRPF39-210ENST00000556718 ESPNB1AK53 854 aa9.59□□□□□ -0.87
PRPF39-210ENST00000556718 GDF11O95390 407 aa9.59□□□□□ -0.87
PRPF39-210ENST00000556718 PTGIRP43119 386 aa9.59□□□□□ -0.87
PRPF39-210ENST00000556718 SUZ12Q15022 739 aaKnown RBP9.59□□□□□ -0.87
PRPF39-210ENST00000556718 ARHGEF15O94989 841 aa9.58□□□□□ -0.88
PRPF39-210ENST00000556718 RFC5P40937 340 aa9.57□□□□□ -0.88
PRPF39-210ENST00000556718 TRIM34Q9BYJ4 488 aa9.57□□□□□ -0.88
PRPF39-210ENST00000556718 CYLDQ9NQC7 956 aa9.57□□□□□ -0.88
PRPF39-210ENST00000556718 ADAMTS2O95450 1211 aa9.54□□□□□ -0.88
PRPF39-210ENST00000556718 RHOQP17081 205 aa9.54□□□□□ -0.88
PRPF39-210ENST00000556718 GAS6Q14393 721 aa9.54□□□□□ -0.88
PRPF39-210ENST00000556718 LYPD4Q6UWN0 246 aa9.54□□□□□ -0.88
PRPF39-210ENST00000556718 LYSMD3Q7Z3D4 306 aa9.54□□□□□ -0.88
PRPF39-210ENST00000556718 PRICKLE2Q7Z3G6 844 aa9.54□□□□□ -0.88
PRPF39-210ENST00000556718 PNMA1Q8ND90 353 aa9.54□□□□□ -0.88
PRPF39-210ENST00000556718 RNF225M0QZC1 329 aaPredicted RBP9.53□□□□□ -0.88
PRPF39-210ENST00000556718 IRS1P35568 1242 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms