RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 NBR1Q14596 966 aa14.81□□□□□ -0.04
SCFD1-220ENST00000556486 PPP1R1BQ9UD71 204 aaPredicted RBP14.81□□□□□ -0.04
SCFD1-220ENST00000556486 GPRASP1Q5JY77 1395 aa14.81□□□□□ -0.04
SCFD1-220ENST00000556486 KIAA0232Q92628 1395 aa14.81□□□□□ -0.04
SCFD1-220ENST00000556486 FAM196AQ6ZSG2 479 aa14.8□□□□□ -0.04
SCFD1-220ENST00000556486 TRAK1Q9UPV9 953 aa14.8□□□□□ -0.04
SCFD1-220ENST00000556486 SPATA31A1Q5TZJ5 1347 aa14.8□□□□□ -0.04
SCFD1-220ENST00000556486 ANKARQ7Z5J8 1434 aa14.8□□□□□ -0.04
SCFD1-220ENST00000556486 PHRF1Q9P1Y6 1649 aaKnown RBP14.8□□□□□ -0.04
SCFD1-220ENST00000556486 ZC3H6P61129 1189 aaKnown RBP14.79□□□□□ -0.04
SCFD1-220ENST00000556486 HS6ST3Q8IZP7 471 aa14.78□□□□□ -0.04
SCFD1-220ENST00000556486 NGDNQ8NEJ9 315 aaKnown RBP14.78□□□□□ -0.04
SCFD1-220ENST00000556486 FARP1Q9Y4F1 1045 aaPredicted RBP14.78□□□□□ -0.04
SCFD1-220ENST00000556486 TULP4Q9NRJ4 1543 aa14.76□□□□□ -0.05
SCFD1-220ENST00000556486 DLC1Q96QB1 1528 aa14.76□□□□□ -0.05
SCFD1-220ENST00000556486 PDE3BQ13370 1112 aa14.75□□□□□ -0.05
SCFD1-220ENST00000556486 NBPF8Q3BBV2 869 aa14.75□□□□□ -0.05
SCFD1-220ENST00000556486 NBPF14Q5TI25 921 aa14.75□□□□□ -0.05
SCFD1-220ENST00000556486 ADGRB1O14514 1584 aa14.74□□□□□ -0.05
SCFD1-220ENST00000556486 PARD3Q8TEW0 1356 aa14.73□□□□□ -0.05
SCFD1-220ENST00000556486 RAB3GAP2Q9H2M9 1393 aa14.73□□□□□ -0.05
SCFD1-220ENST00000556486 C19orf67A6NJJ6 358 aa14.73□□□□□ -0.05
SCFD1-220ENST00000556486 KCNQ2O43526 872 aa14.73□□□□□ -0.05
SCFD1-220ENST00000556486 EVA1CP58658 441 aa14.73□□□□□ -0.05
SCFD1-220ENST00000556486 LARP1Q6PKG0 1096 aaKnown RBP14.73□□□□□ -0.05
SCFD1-220ENST00000556486 SPON1Q9HCB6 807 aa14.73□□□□□ -0.05
SCFD1-220ENST00000556486 SSH2Q76I76 1423 aa14.73□□□□□ -0.05
SCFD1-220ENST00000556486 ITSN1Q15811 1721 aa14.72□□□□□ -0.05
SCFD1-220ENST00000556486 WASLO00401 505 aaPredicted RBP14.72□□□□□ -0.05
SCFD1-220ENST00000556486 EVX2Q03828 476 aa14.72□□□□□ -0.05
SCFD1-220ENST00000556486 STAC3Q96MF2 364 aa14.71□□□□□ -0.05
SCFD1-220ENST00000556486 PDGFDQ9GZP0 370 aaPredicted RBP14.71□□□□□ -0.05
SCFD1-220ENST00000556486 NRKQ7Z2Y5 1582 aa14.71□□□□□ -0.05
SCFD1-220ENST00000556486 ZBTB7CA1YPR0 619 aa14.7□□□□□ -0.06
SCFD1-220ENST00000556486 MYOM1P52179 1685 aa14.7□□□□□ -0.06
SCFD1-220ENST00000556486 ATP7BP35670 1465 aa14.69□□□□□ -0.06
SCFD1-220ENST00000556486 ANO8Q9HCE9 1232 aaPredicted RBP14.69□□□□□ -0.06
SCFD1-220ENST00000556486 EIF3AQ14152 1382 aaKnown RBP14.69□□□□□ -0.06
SCFD1-220ENST00000556486 ARHGEF28Q8N1W1 1705 aaKnown RBP14.69□□□□□ -0.06
SCFD1-220ENST00000556486 UTRNP46939 3433 aa14.69□□□□□ -0.06
SCFD1-220ENST00000556486 CASZ1Q86V15 1759 aa14.68□□□□□ -0.06
SCFD1-220ENST00000556486 ZBTB7AO95365 584 aa14.68□□□□□ -0.06
SCFD1-220ENST00000556486 BARGINQ6ZT62 677 aa14.68□□□□□ -0.06
SCFD1-220ENST00000556486 PTF1AQ7RTS3 328 aa14.68□□□□□ -0.06
SCFD1-220ENST00000556486 NUDT16Q96DE0 195 aaKnown RBP14.68□□□□□ -0.06
SCFD1-220ENST00000556486 NINLQ9Y2I6 1382 aa14.68□□□□□ -0.06
SCFD1-220ENST00000556486 LMO7Q8WWI1 1683 aa14.68□□□□□ -0.06
SCFD1-220ENST00000556486 PARP4Q9UKK3 1724 aaKnown RBP14.67□□□□□ -0.06
SCFD1-220ENST00000556486 SBF2Q86WG5 1849 aa14.67□□□□□ -0.06
SCFD1-220ENST00000556486 MNX1P50219 401 aaPredicted RBP14.67□□□□□ -0.06
SCFD1-220ENST00000556486 TCP11L2Q8N4U5 519 aa14.67□□□□□ -0.06
SCFD1-220ENST00000556486 SP7Q8TDD2 431 aaPredicted RBP14.66□□□□□ -0.06
SCFD1-220ENST00000556486 PEAK1Q9H792 1746 aa14.66□□□□□ -0.06
SCFD1-220ENST00000556486 TOPAZ1Q8N9V7 1692 aa14.65□□□□□ -0.06
SCFD1-220ENST00000556486 ZNF784Q8NCA9 323 aaPredicted RBP14.65□□□□□ -0.06
SCFD1-220ENST00000556486 LRRC37A3O60309 1634 aa14.65□□□□□ -0.06
SCFD1-220ENST00000556486 ACEP12821 1306 aa14.65□□□□□ -0.06
SCFD1-220ENST00000556486 RNF25Q96BH1 459 aaPredicted RBP14.64□□□□□ -0.07
SCFD1-220ENST00000556486 SENP3-EIF4A1A0A087X0R7 540 aa14.63□□□□□ -0.07
SCFD1-220ENST00000556486 GSE1Q14687 1217 aa14.63□□□□□ -0.07
SCFD1-220ENST00000556486 ABTB2Q8N961 1025 aa14.63□□□□□ -0.07
SCFD1-220ENST00000556486 DCAF11Q8TEB1 546 aa14.63□□□□□ -0.07
SCFD1-220ENST00000556486 CDK19Q9BWU1 502 aa14.63□□□□□ -0.07
SCFD1-220ENST00000556486 COL5A2P05997 1499 aaPredicted RBP14.63□□□□□ -0.07
SCFD1-220ENST00000556486 OVOS2A0A0G2JMS6 1433 aa14.62□□□□□ -0.07
SCFD1-220ENST00000556486 OVOS2A0A0J9YW53 1432 aa14.62□□□□□ -0.07
SCFD1-220ENST00000556486 OVOS2Q6IE36 1432 aa14.62□□□□□ -0.07
SCFD1-220ENST00000556486 BCL11BQ9C0K0 894 aaPredicted RBP14.62□□□□□ -0.07
SCFD1-220ENST00000556486 RGPD3A6NKT7 1758 aaPredicted RBP14.61□□□□□ -0.07
SCFD1-220ENST00000556486 RGPD4Q7Z3J3 1758 aa14.61□□□□□ -0.07
SCFD1-220ENST00000556486 WNK3Q9BYP7 1800 aa14.59□□□□□ -0.07
SCFD1-220ENST00000556486 PTGER2P43116 358 aa14.59□□□□□ -0.07
SCFD1-220ENST00000556486 FHDC1Q9C0D6 1143 aaPredicted RBP14.59□□□□□ -0.07
SCFD1-220ENST00000556486 AKAP12Q02952 1782 aa14.59□□□□□ -0.07
SCFD1-220ENST00000556486 POLR3AO14802 1390 aaPredicted RBP14.59□□□□□ -0.07
SCFD1-220ENST00000556486 CPDO75976 1380 aa14.59□□□□□ -0.07
SCFD1-220ENST00000556486 CRB1P82279 1406 aa14.58□□□□□ -0.07
SCFD1-220ENST00000556486 GCP02774 474 aa14.58□□□□□ -0.08
SCFD1-220ENST00000556486 NKX1-1Q15270 411 aaPredicted RBP14.58□□□□□ -0.08
SCFD1-220ENST00000556486 DDB1Q16531 1140 aa14.58□□□□□ -0.08
SCFD1-220ENST00000556486 USP19O94966 1318 aa14.58□□□□□ -0.08
SCFD1-220ENST00000556486 CHD4Q14839 1912 aa14.57□□□□□ -0.08
SCFD1-220ENST00000556486 THRAP3Q9Y2W1 955 aaKnown RBP14.57□□□□□ -0.08
SCFD1-220ENST00000556486 RGPD5Q99666 1765 aa14.56□□□□□ -0.08
SCFD1-220ENST00000556486 PLSCR1O15162 318 aa14.56□□□□□ -0.08
SCFD1-220ENST00000556486 CD44P16070 742 aaKnown RBP14.56□□□□□ -0.08
SCFD1-220ENST00000556486 TOM1L2Q6ZVM7 507 aa14.56□□□□□ -0.08
SCFD1-220ENST00000556486 MARCH10Q8NA82 808 aaPredicted RBP14.56□□□□□ -0.08
SCFD1-220ENST00000556486 KIAA1210Q9ULL0 1709 aa14.55□□□□□ -0.08
SCFD1-220ENST00000556486 SYT17Q9BSW7 474 aa14.55□□□□□ -0.08
SCFD1-220ENST00000556486 CCDC61Q9Y6R9 512 aa14.55□□□□□ -0.08
SCFD1-220ENST00000556486 GTPBP6O43824 516 aaPredicted RBP14.54□□□□□ -0.08
SCFD1-220ENST00000556486 C1QTNF8P60827 252 aa14.54□□□□□ -0.08
SCFD1-220ENST00000556486 NLRP13Q86W25 1043 aa14.54□□□□□ -0.08
SCFD1-220ENST00000556486 STK32BQ9NY57 414 aa14.54□□□□□ -0.08
SCFD1-220ENST00000556486 PPIP5K1Q6PFW1 1433 aa14.54□□□□□ -0.08
SCFD1-220ENST00000556486 PLEKHG3A1L390 1219 aa14.53□□□□□ -0.08
SCFD1-220ENST00000556486 RIOK3O14730 519 aaKnown RBP14.53□□□□□ -0.08
SCFD1-220ENST00000556486 SOX12O15370 315 aa14.53□□□□□ -0.08
SCFD1-220ENST00000556486 SRPK2P78362 688 aaKnown RBP14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms