RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-215	ENST00000554997	FLT4	P35916	1363 aa		13.72	□□□□□ -0.21
SYNE2-215	ENST00000554997	MEX3C	Q5U5Q3	659 aa	Known RBP	13.72	□□□□□ -0.21
SYNE2-215	ENST00000554997	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.72	□□□□□ -0.21
SYNE2-215	ENST00000554997	BTG4	Q9NY30	223 aa		13.72	□□□□□ -0.21
SYNE2-215	ENST00000554997	RTL1	A6NKG5	1358 aa		13.71	□□□□□ -0.21
SYNE2-215	ENST00000554997	CRYBG1	Q9Y4K1	1723 aa		13.71	□□□□□ -0.21
SYNE2-215	ENST00000554997	EVA1C	P58658	441 aa		13.71	□□□□□ -0.21
SYNE2-215	ENST00000554997	C8orf37	Q96NL8	207 aa		13.71	□□□□□ -0.21
SYNE2-215	ENST00000554997	SMG6	Q86US8	1419 aa	Known RBP	13.71	□□□□□ -0.22
SYNE2-215	ENST00000554997	CCER2	I3L3R5	266 aa		13.7	□□□□□ -0.22
SYNE2-215	ENST00000554997	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.7	□□□□□ -0.22
SYNE2-215	ENST00000554997	LRP6	O75581	1613 aa		13.69	□□□□□ -0.22
SYNE2-215	ENST00000554997	DIAPH1	O60610	1272 aa	Known RBP	13.69	□□□□□ -0.22
SYNE2-215	ENST00000554997	IL13	P35225	146 aa		13.69	□□□□□ -0.22
SYNE2-215	ENST00000554997	ANKRD24	Q8TF21	1146 aa		13.69	□□□□□ -0.22
SYNE2-215	ENST00000554997	BLM	P54132	1417 aa	Predicted RBP	13.69	□□□□□ -0.22
SYNE2-215	ENST00000554997	EIF4A2	Q14240	407 aa	Known RBP	13.68	□□□□□ -0.22
SYNE2-215	ENST00000554997	UNC5CL	Q8IV45	518 aa		13.68	□□□□□ -0.22
SYNE2-215	ENST00000554997	CAMTA1	Q9Y6Y1	1673 aa		13.67	□□□□□ -0.22
SYNE2-215	ENST00000554997	CCDC184	Q52MB2	194 aa		13.67	□□□□□ -0.22
SYNE2-215	ENST00000554997	LTV1	Q96GA3	475 aa	Predicted RBP	13.67	□□□□□ -0.22
SYNE2-215	ENST00000554997	USP21	Q9UK80	565 aa		13.67	□□□□□ -0.22
SYNE2-215	ENST00000554997	NUDC	Q9Y266	331 aa		13.67	□□□□□ -0.22
SYNE2-215	ENST00000554997	ABCA3	Q99758	1704 aa		13.67	□□□□□ -0.22
SYNE2-215	ENST00000554997	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.67	□□□□□ -0.22
SYNE2-215	ENST00000554997	ERBB3	P21860	1342 aa		13.66	□□□□□ -0.22
SYNE2-215	ENST00000554997	SLIT2	O94813	1529 aa		13.66	□□□□□ -0.22
SYNE2-215	ENST00000554997	ABCC6	O95255	1503 aa		13.66	□□□□□ -0.22
SYNE2-215	ENST00000554997	CSB-PGBD3	P0DP91	1061 aa		13.66	□□□□□ -0.22
SYNE2-215	ENST00000554997	STRN4	Q9NRL3	753 aa		13.66	□□□□□ -0.22
SYNE2-215	ENST00000554997	MAP2	P11137	1827 aa	Known RBP	13.66	□□□□□ -0.22
SYNE2-215	ENST00000554997	WDR17	Q8IZU2	1322 aa		13.65	□□□□□ -0.22
SYNE2-215	ENST00000554997	NBPF6	Q5VWK0	638 aa		13.65	□□□□□ -0.22
SYNE2-215	ENST00000554997	LARP1	Q6PKG0	1096 aa	Known RBP	13.65	□□□□□ -0.22
SYNE2-215	ENST00000554997	NBPF4	Q96M43	638 aa		13.65	□□□□□ -0.22
SYNE2-215	ENST00000554997	EYA1	Q99502	592 aa		13.65	□□□□□ -0.22
SYNE2-215	ENST00000554997	MRS2	Q9HD23	443 aa		13.65	□□□□□ -0.22
SYNE2-215	ENST00000554997	BCL9L	Q86UU0	1499 aa		13.65	□□□□□ -0.22
SYNE2-215	ENST00000554997	COL18A1	P39060	1754 aa		13.65	□□□□□ -0.22
SYNE2-215	ENST00000554997	COL14A1	Q05707	1796 aa	Known RBP	13.65	□□□□□ -0.22
SYNE2-215	ENST00000554997	AFF2	P51816	1311 aa		13.64	□□□□□ -0.23
SYNE2-215	ENST00000554997	VPS72	Q15906	364 aa		13.64	□□□□□ -0.23
SYNE2-215	ENST00000554997	TOM1L2	Q6ZVM7	507 aa		13.64	□□□□□ -0.23
SYNE2-215	ENST00000554997	PNISR	Q8TF01	805 aa	Known RBP	13.64	□□□□□ -0.23
SYNE2-215	ENST00000554997	CARD10	Q9BWT7	1032 aa		13.64	□□□□□ -0.23
SYNE2-215	ENST00000554997	NLRP2	Q9NX02	1062 aa		13.64	□□□□□ -0.23
SYNE2-215	ENST00000554997	PEAK1	Q9H792	1746 aa		13.64	□□□□□ -0.23
SYNE2-215	ENST00000554997	COL5A2	P05997	1499 aa	Predicted RBP	13.63	□□□□□ -0.23
SYNE2-215	ENST00000554997	ZNF772	Q68DY9	489 aa	Predicted RBP	13.63	□□□□□ -0.23
SYNE2-215	ENST00000554997	ILDR2	Q71H61	639 aa		13.63	□□□□□ -0.23
SYNE2-215	ENST00000554997	QTRT2	Q9H974	415 aa	Known RBP	13.63	□□□□□ -0.23
SYNE2-215	ENST00000554997	LMO7	Q8WWI1	1683 aa		13.63	□□□□□ -0.23
SYNE2-215	ENST00000554997	U2SURP	O15042	1029 aa	Known RBP	13.62	□□□□□ -0.23
SYNE2-215	ENST00000554997	TRPC5	Q9UL62	973 aa	Predicted RBP	13.62	□□□□□ -0.23
SYNE2-215	ENST00000554997	COL3A1	P02461	1466 aa	Predicted RBP	13.61	□□□□□ -0.23
SYNE2-215	ENST00000554997	LTN1	O94822	1766 aa		13.61	□□□□□ -0.23
SYNE2-215	ENST00000554997	FCHSD2	O94868	740 aa		13.61	□□□□□ -0.23
SYNE2-215	ENST00000554997	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.61	□□□□□ -0.23
SYNE2-215	ENST00000554997	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
SYNE2-215	ENST00000554997	THRAP3	Q9Y2W1	955 aa	Known RBP	13.61	□□□□□ -0.23
SYNE2-215	ENST00000554997	CRB1	P82279	1406 aa		13.61	□□□□□ -0.23
SYNE2-215	ENST00000554997	SPATA31A5	Q5VU36	1347 aa		13.61	□□□□□ -0.23
SYNE2-215	ENST00000554997	SPATA31A7	Q8IWB4	1347 aa		13.61	□□□□□ -0.23
SYNE2-215	ENST00000554997	IGSF1	Q8N6C5	1336 aa		13.61	□□□□□ -0.23
SYNE2-215	ENST00000554997	WDR43	Q15061	677 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
SYNE2-215	ENST00000554997	SULT6B1	Q6IMI4	303 aa		13.6	□□□□□ -0.23
SYNE2-215	ENST00000554997	GJD4	Q96KN9	370 aa	Predicted RBP	13.6	□□□□□ -0.23
SYNE2-215	ENST00000554997	ADAMTS8	Q9UP79	889 aa		13.6	□□□□□ -0.23
SYNE2-215	ENST00000554997	SPATA31A1	Q5TZJ5	1347 aa		13.6	□□□□□ -0.23
SYNE2-215	ENST00000554997	TCP11L2	Q8N4U5	519 aa		13.59	□□□□□ -0.23
SYNE2-215	ENST00000554997	PNN	Q9H307	717 aa	Known RBP	13.59	□□□□□ -0.23
SYNE2-215	ENST00000554997	RGS17	Q9UGC6	210 aa	Predicted RBP	13.59	□□□□□ -0.23
SYNE2-215	ENST00000554997	CCDC9	Q9Y3X0	531 aa	Known RBP	13.59	□□□□□ -0.23
SYNE2-215	ENST00000554997	ONECUT3	O60422	494 aa	Predicted RBP	13.58	□□□□□ -0.24
SYNE2-215	ENST00000554997	BARGIN	Q6ZT62	677 aa		13.58	□□□□□ -0.24
SYNE2-215	ENST00000554997	USHBP1	Q8N6Y0	703 aa		13.58	□□□□□ -0.24
SYNE2-215	ENST00000554997	USP35	Q9P2H5	1018 aa		13.58	□□□□□ -0.24
SYNE2-215	ENST00000554997	NWD2	Q9ULI1	1742 aa		13.57	□□□□□ -0.24
SYNE2-215	ENST00000554997	HMOX1	P09601	288 aa		13.57	□□□□□ -0.24
SYNE2-215	ENST00000554997	KDR	P35968	1356 aa		13.57	□□□□□ -0.24
SYNE2-215	ENST00000554997	ATRN	O75882	1429 aa		13.56	□□□□□ -0.24
SYNE2-215	ENST00000554997	AEBP1	Q8IUX7	1158 aa		13.56	□□□□□ -0.24
SYNE2-215	ENST00000554997	FAM9B	Q8IZU0	186 aa		13.56	□□□□□ -0.24
SYNE2-215	ENST00000554997	RAPGEF4	Q8WZA2	1011 aa		13.56	□□□□□ -0.24
SYNE2-215	ENST00000554997	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.56	□□□□□ -0.24
SYNE2-215	ENST00000554997	RSPH6A	Q9H0K4	717 aa		13.56	□□□□□ -0.24
SYNE2-215	ENST00000554997	NCAPD2	Q15021	1401 aa		13.56	□□□□□ -0.24
SYNE2-215	ENST00000554997	IL2RB	P14784	551 aa		13.55	□□□□□ -0.24
SYNE2-215	ENST00000554997	TAT	P17735	454 aa	Predicted RBP	13.55	□□□□□ -0.24
SYNE2-215	ENST00000554997	RBM6	P78332	1123 aa	Known RBP	13.55	□□□□□ -0.24
SYNE2-215	ENST00000554997	PLEKHF1	Q96S99	279 aa		13.55	□□□□□ -0.24
SYNE2-215	ENST00000554997	PLCH1	Q4KWH8	1693 aa		13.55	□□□□□ -0.24
SYNE2-215	ENST00000554997	RGPD5	Q99666	1765 aa		13.55	□□□□□ -0.24
SYNE2-215	ENST00000554997	RXRB	P28702	533 aa		13.54	□□□□□ -0.24
SYNE2-215	ENST00000554997	RUNDC1	Q96C34	613 aa		13.54	□□□□□ -0.24
SYNE2-215	ENST00000554997	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
SYNE2-215	ENST00000554997	EXOC5	O00471	708 aa		13.53	□□□□□ -0.24
SYNE2-215	ENST00000554997	PRKAR2B	P31323	418 aa		13.53	□□□□□ -0.24
SYNE2-215	ENST00000554997	FAM98C	Q17RN3	349 aa	Known RBP	13.53	□□□□□ -0.24
SYNE2-215	ENST00000554997	AMOT	Q4VCS5	1084 aa		13.53	□□□□□ -0.24

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