RNA–Protein interactions for RNA: ENST00000554928.1

SYNE2-214, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 1,048 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-214ENST00000554928 CCDC9Q9Y3X0 531 aaKnown RBP17.14■□□□□ 0.33
SYNE2-214ENST00000554928 SOCS7O14512 581 aa17.13■□□□□ 0.33
SYNE2-214ENST00000554928 KCNH5Q8NCM2 988 aa17.13■□□□□ 0.33
SYNE2-214ENST00000554928 PANK3Q9H999 370 aa17.13■□□□□ 0.33
SYNE2-214ENST00000554928 AATKQ6ZMQ8 1374 aa17.13■□□□□ 0.33
SYNE2-214ENST00000554928 COL18A1P39060 1754 aa17.12■□□□□ 0.33
SYNE2-214ENST00000554928 CDK12Q9NYV4 1490 aaPredicted RBP17.12■□□□□ 0.33
SYNE2-214ENST00000554928 LARP1Q6PKG0 1096 aaKnown RBP17.12■□□□□ 0.33
SYNE2-214ENST00000554928 COG3Q96JB2 828 aa17.11■□□□□ 0.33
SYNE2-214ENST00000554928 SPATA31A5Q5VU36 1347 aa17.11■□□□□ 0.33
SYNE2-214ENST00000554928 WASHC2AQ641Q2 1341 aa17.11■□□□□ 0.33
SYNE2-214ENST00000554928 SPATA31A7Q8IWB4 1347 aa17.11■□□□□ 0.33
SYNE2-214ENST00000554928 COL5A2P05997 1499 aaPredicted RBP17.11■□□□□ 0.33
SYNE2-214ENST00000554928 CCDC7Q96M83 1385 aa17.1■□□□□ 0.33
SYNE2-214ENST00000554928 CACNB1Q02641 598 aaPredicted RBP17.09■□□□□ 0.33
SYNE2-214ENST00000554928 SPATA31A1Q5TZJ5 1347 aa17.08■□□□□ 0.32
SYNE2-214ENST00000554928 EVA1CP58658 441 aa17.08■□□□□ 0.32
SYNE2-214ENST00000554928 FAM98CQ17RN3 349 aaKnown RBP17.08■□□□□ 0.32
SYNE2-214ENST00000554928 RRS1Q15050 365 aaKnown RBP17.07■□□□□ 0.32
SYNE2-214ENST00000554928 USP35Q9P2H5 1018 aa17.07■□□□□ 0.32
SYNE2-214ENST00000554928 MAP3K19Q56UN5 1328 aa17.06■□□□□ 0.32
SYNE2-214ENST00000554928 KIF20BQ96Q89 1820 aa17.06■□□□□ 0.32
SYNE2-214ENST00000554928 SEPT12Q8IYM1 358 aa17.06■□□□□ 0.32
SYNE2-214ENST00000554928 RNF39Q9H2S5 420 aa17.06■□□□□ 0.32
SYNE2-214ENST00000554928 ONECUT3O60422 494 aaPredicted RBP17.05■□□□□ 0.32
SYNE2-214ENST00000554928 CGNL1Q0VF96 1302 aa17.04■□□□□ 0.32
SYNE2-214ENST00000554928 RGPD5Q99666 1765 aa17.04■□□□□ 0.32
SYNE2-214ENST00000554928 LTN1O94822 1766 aa17.03■□□□□ 0.32
SYNE2-214ENST00000554928 WDR17Q8IZU2 1322 aa17.02■□□□□ 0.32
SYNE2-214ENST00000554928 CRB1P82279 1406 aa17.02■□□□□ 0.31
SYNE2-214ENST00000554928 THSD7AQ9UPZ6 1657 aa17.01■□□□□ 0.31
SYNE2-214ENST00000554928 A0A0G2JS52 829 aa17.01■□□□□ 0.31
SYNE2-214ENST00000554928 HOXC9P31274 260 aa17.01■□□□□ 0.31
SYNE2-214ENST00000554928 MYT1Q01538 1121 aa17.01■□□□□ 0.31
SYNE2-214ENST00000554928 TOM1L2Q6ZVM7 507 aa17.01■□□□□ 0.31
SYNE2-214ENST00000554928 IP6K1Q92551 441 aa17.01■□□□□ 0.31
SYNE2-214ENST00000554928 EMILIN1Q9Y6C2 1016 aa17.01■□□□□ 0.31
SYNE2-214ENST00000554928 ABCC6O95255 1503 aa17.01■□□□□ 0.31
SYNE2-214ENST00000554928 ERBB3P21860 1342 aa17■□□□□ 0.31
SYNE2-214ENST00000554928 PER1O15534 1290 aaPredicted RBP17■□□□□ 0.31
SYNE2-214ENST00000554928 CSB-PGBD3P0DP91 1061 aa17■□□□□ 0.31
SYNE2-214ENST00000554928 TNNT2P45379 298 aaPredicted RBP17■□□□□ 0.31
SYNE2-214ENST00000554928 AMER1Q5JTC6 1135 aaPredicted RBP17■□□□□ 0.31
SYNE2-214ENST00000554928 TCP11L2Q8N4U5 519 aa17■□□□□ 0.31
SYNE2-214ENST00000554928 ANKRD24Q8TF21 1146 aa17■□□□□ 0.31
SYNE2-214ENST00000554928 LTV1Q96GA3 475 aaPredicted RBP17■□□□□ 0.31
SYNE2-214ENST00000554928 PEAK1Q9H792 1746 aa17■□□□□ 0.31
SYNE2-214ENST00000554928 BRWD3Q6RI45 1802 aa17■□□□□ 0.31
SYNE2-214ENST00000554928 FAM182BQ5T319 152 aa16.99■□□□□ 0.31
SYNE2-214ENST00000554928 UPF1Q92900 1129 aaKnown RBP eCLIP16.99■□□□□ 0.31
SYNE2-214ENST00000554928 NPM3O75607 178 aaKnown RBP16.98■□□□□ 0.31
SYNE2-214ENST00000554928 AMPHP49418 695 aa16.98■□□□□ 0.31
SYNE2-214ENST00000554928 BARGINQ6ZT62 677 aa16.98■□□□□ 0.31
SYNE2-214ENST00000554928 HSP90AB2PQ58FF8 381 aa16.97■□□□□ 0.31
SYNE2-214ENST00000554928 KNSTRNQ9Y448 316 aa16.97■□□□□ 0.31
SYNE2-214ENST00000554928 BLMP54132 1417 aaPredicted RBP16.96■□□□□ 0.31
SYNE2-214ENST00000554928 KRT27Q7Z3Y8 459 aa16.96■□□□□ 0.31
SYNE2-214ENST00000554928 CARD10Q9BWT7 1032 aa16.96■□□□□ 0.31
SYNE2-214ENST00000554928 NLRP2Q9NX02 1062 aa16.96■□□□□ 0.31
SYNE2-214ENST00000554928 POLKQ9UBT6 870 aa16.96■□□□□ 0.31
SYNE2-214ENST00000554928 RTL1A6NKG5 1358 aa16.95■□□□□ 0.3
SYNE2-214ENST00000554928 CNGB1Q14028 1251 aaPredicted RBP16.95■□□□□ 0.3
SYNE2-214ENST00000554928 EP400Q96L91 3159 aa16.95■□□□□ 0.3
SYNE2-214ENST00000554928 DISP2A7MBM2 1401 aa16.95■□□□□ 0.3
SYNE2-214ENST00000554928 ANKRD26Q9UPS8 1709 aa16.94■□□□□ 0.3
SYNE2-214ENST00000554928 CC2D1BQ5T0F9 858 aaKnown RBP16.94■□□□□ 0.3
SYNE2-214ENST00000554928 THRAP3Q9Y2W1 955 aaKnown RBP16.94■□□□□ 0.3
SYNE2-214ENST00000554928 NSD2O96028 1365 aa16.93■□□□□ 0.3
SYNE2-214ENST00000554928 PPM1GO15355 546 aaPredicted RBP16.93■□□□□ 0.3
SYNE2-214ENST00000554928 MORC1Q86VD1 984 aa16.93■□□□□ 0.3
SYNE2-214ENST00000554928 FLT4P35916 1363 aa16.92■□□□□ 0.3
SYNE2-214ENST00000554928 USHBP1Q8N6Y0 703 aa16.92■□□□□ 0.3
SYNE2-214ENST00000554928 INSRP06213 1382 aa16.91■□□□□ 0.3
SYNE2-214ENST00000554928 ZEB1P37275 1124 aaPredicted RBP16.91■□□□□ 0.3
SYNE2-214ENST00000554928 NBPF6Q5VWK0 638 aa16.91■□□□□ 0.3
SYNE2-214ENST00000554928 NBPF4Q96M43 638 aa16.91■□□□□ 0.3
SYNE2-214ENST00000554928 LRRC37A3O60309 1634 aa16.9■□□□□ 0.3
SYNE2-214ENST00000554928 RGPD2P0DJD1 1756 aa16.89■□□□□ 0.3
SYNE2-214ENST00000554928 WNK3Q9BYP7 1800 aa16.89■□□□□ 0.29
SYNE2-214ENST00000554928 PARP4Q9UKK3 1724 aaKnown RBP16.89■□□□□ 0.29
SYNE2-214ENST00000554928 KIF24Q5T7B8 1368 aa16.89■□□□□ 0.29
SYNE2-214ENST00000554928 FAM208AQ9UK61 1670 aaKnown RBP16.88■□□□□ 0.29
SYNE2-214ENST00000554928 C1QBPQ07021 282 aaKnown RBP16.88■□□□□ 0.29
SYNE2-214ENST00000554928 SMG6Q86US8 1419 aaKnown RBP16.87■□□□□ 0.29
SYNE2-214ENST00000554928 MAP2P11137 1827 aaKnown RBP16.87■□□□□ 0.29
SYNE2-214ENST00000554928 DDB1Q16531 1140 aa16.87■□□□□ 0.29
SYNE2-214ENST00000554928 MARCH10Q8NA82 808 aaPredicted RBP16.87■□□□□ 0.29
SYNE2-214ENST00000554928 MEGF6O75095 1541 aa16.86■□□□□ 0.29
SYNE2-214ENST00000554928 IL2RBP14784 551 aa16.86■□□□□ 0.29
SYNE2-214ENST00000554928 PDE3BQ13370 1112 aa16.86■□□□□ 0.29
SYNE2-214ENST00000554928 EIF4A2Q14240 407 aaKnown RBP16.86■□□□□ 0.29
SYNE2-214ENST00000554928 NPC1L1Q9UHC9 1359 aa16.85■□□□□ 0.29
SYNE2-214ENST00000554928 EYA1Q99502 592 aa16.84■□□□□ 0.29
SYNE2-214ENST00000554928 CDCA7Q9BWT1 371 aaPredicted RBP16.84■□□□□ 0.29
SYNE2-214ENST00000554928 TNS2Q63HR2 1409 aa16.84■□□□□ 0.29
SYNE2-214ENST00000554928 DDX10Q13206 875 aaKnown RBP16.83■□□□□ 0.28
SYNE2-214ENST00000554928 PTF1AQ7RTS3 328 aa16.83■□□□□ 0.28
SYNE2-214ENST00000554928 DEFB132Q7Z7B7 95 aa16.83■□□□□ 0.28
SYNE2-214ENST00000554928 EXOC5O00471 708 aa16.82■□□□□ 0.28
SYNE2-214ENST00000554928 TRIM37O94972 964 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms