RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 AXIN2Q9Y2T1 843 aa16.56■□□□□ 0.24
SHMT2-209ENST00000553949 FLT4P35916 1363 aa16.55■□□□□ 0.24
SHMT2-209ENST00000553949 COL14A1Q05707 1796 aaKnown RBP16.55■□□□□ 0.24
SHMT2-209ENST00000553949 SLIT2O94813 1529 aa16.55■□□□□ 0.24
SHMT2-209ENST00000553949 ABCC6O95255 1503 aa16.55■□□□□ 0.24
SHMT2-209ENST00000553949 HSP90AB2PQ58FF8 381 aa16.54■□□□□ 0.24
SHMT2-209ENST00000553949 CAMTA1Q9Y6Y1 1673 aa16.53■□□□□ 0.24
SHMT2-209ENST00000553949 AFF2P51816 1311 aa16.53■□□□□ 0.24
SHMT2-209ENST00000553949 MYBBP1AQ9BQG0 1328 aaKnown RBP16.53■□□□□ 0.24
SHMT2-209ENST00000553949 LTN1O94822 1766 aa16.53■□□□□ 0.24
SHMT2-209ENST00000553949 PEAK1Q9H792 1746 aa16.53■□□□□ 0.24
SHMT2-209ENST00000553949 BLMP54132 1417 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-209ENST00000553949 LMO7Q8WWI1 1683 aa16.53■□□□□ 0.24
SHMT2-209ENST00000553949 COL18A1P39060 1754 aa16.52■□□□□ 0.24
SHMT2-209ENST00000553949 UNC5CLQ8IV45 518 aa16.52■□□□□ 0.24
SHMT2-209ENST00000553949 USP21Q9UK80 565 aa16.52■□□□□ 0.24
SHMT2-209ENST00000553949 BCL9LQ86UU0 1499 aa16.52■□□□□ 0.23
SHMT2-209ENST00000553949 CDK12Q9NYV4 1490 aaPredicted RBP16.52■□□□□ 0.23
SHMT2-209ENST00000553949 INSRP06213 1382 aa16.51■□□□□ 0.23
SHMT2-209ENST00000553949 COL5A2P05997 1499 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-209ENST00000553949 EVA1CP58658 441 aa16.51■□□□□ 0.23
SHMT2-209ENST00000553949 STRN4Q9NRL3 753 aa16.51■□□□□ 0.23
SHMT2-209ENST00000553949 ANKRD24Q8TF21 1146 aa16.5■□□□□ 0.23
SHMT2-209ENST00000553949 LTV1Q96GA3 475 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-209ENST00000553949 PLCH1Q4KWH8 1693 aa16.5■□□□□ 0.23
SHMT2-209ENST00000553949 MAP2P11137 1827 aaKnown RBP16.49■□□□□ 0.23
SHMT2-209ENST00000553949 ERBB3P21860 1342 aa16.49■□□□□ 0.23
SHMT2-209ENST00000553949 CSB-PGBD3P0DP91 1061 aa16.48■□□□□ 0.23
SHMT2-209ENST00000553949 LARP1Q6PKG0 1096 aaKnown RBP16.48■□□□□ 0.23
SHMT2-209ENST00000553949 CFAP53Q96M91 514 aa16.48■□□□□ 0.23
SHMT2-209ENST00000553949 PHF23Q9BUL5 403 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-209ENST00000553949 NWD2Q9ULI1 1742 aa16.48■□□□□ 0.23
SHMT2-209ENST00000553949 WDR17Q8IZU2 1322 aa16.47■□□□□ 0.23
SHMT2-209ENST00000553949 EIF4A2Q14240 407 aaKnown RBP16.47■□□□□ 0.23
SHMT2-209ENST00000553949 ZNF772Q68DY9 489 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-209ENST00000553949 NRAPQ86VF7 1730 aa16.46■□□□□ 0.23
SHMT2-209ENST00000553949 VPS72Q15906 364 aa16.46■□□□□ 0.23
SHMT2-209ENST00000553949 DIAPH1O60610 1272 aaKnown RBP16.45■□□□□ 0.22
SHMT2-209ENST00000553949 IL13P35225 146 aa16.45■□□□□ 0.22
SHMT2-209ENST00000553949 TOM1L2Q6ZVM7 507 aa16.45■□□□□ 0.22
SHMT2-209ENST00000553949 RGS17Q9UGC6 210 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-209ENST00000553949 TRPC5Q9UL62 973 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-209ENST00000553949 COL3A1P02461 1466 aaPredicted RBP16.45■□□□□ 0.22
SHMT2-209ENST00000553949 QTRT2Q9H974 415 aaKnown RBP16.44■□□□□ 0.22
SHMT2-209ENST00000553949 NLRP2Q9NX02 1062 aa16.44■□□□□ 0.22
SHMT2-209ENST00000553949 CCDC9Q9Y3X0 531 aaKnown RBP16.44■□□□□ 0.22
SHMT2-209ENST00000553949 ATRNO75882 1429 aa16.44■□□□□ 0.22
SHMT2-209ENST00000553949 CRB1P82279 1406 aa16.44■□□□□ 0.22
SHMT2-209ENST00000553949 NBPF6Q5VWK0 638 aa16.43■□□□□ 0.22
SHMT2-209ENST00000553949 NBPF4Q96M43 638 aa16.43■□□□□ 0.22
SHMT2-209ENST00000553949 CARD10Q9BWT7 1032 aa16.43■□□□□ 0.22
SHMT2-209ENST00000553949 RGPD5Q99666 1765 aa16.43■□□□□ 0.22
SHMT2-209ENST00000553949 SPATA31A5Q5VU36 1347 aa16.43■□□□□ 0.22
SHMT2-209ENST00000553949 SPATA31A7Q8IWB4 1347 aa16.43■□□□□ 0.22
SHMT2-209ENST00000553949 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.42■□□□□ 0.22
SHMT2-209ENST00000553949 EYA1Q99502 592 aa16.42■□□□□ 0.22
SHMT2-209ENST00000553949 USP35Q9P2H5 1018 aa16.42■□□□□ 0.22
SHMT2-209ENST00000553949 SPATA31A1Q5TZJ5 1347 aa16.42■□□□□ 0.22
SHMT2-209ENST00000553949 CCDC184Q52MB2 194 aa16.41■□□□□ 0.22
SHMT2-209ENST00000553949 GJD4Q96KN9 370 aaPredicted RBP16.41■□□□□ 0.22
SHMT2-209ENST00000553949 MIER1Q8N108 512 aa16.4■□□□□ 0.22
SHMT2-209ENST00000553949 TCP11L2Q8N4U5 519 aa16.4■□□□□ 0.22
SHMT2-209ENST00000553949 NUDCQ9Y266 331 aa16.4■□□□□ 0.22
SHMT2-209ENST00000553949 IGSF1Q8N6C5 1336 aa16.4■□□□□ 0.22
SHMT2-209ENST00000553949 U2SURPO15042 1029 aaKnown RBP16.39■□□□□ 0.21
SHMT2-209ENST00000553949 POTEAQ6S8J7 498 aa16.39■□□□□ 0.21
SHMT2-209ENST00000553949 USHBP1Q8N6Y0 703 aa16.39■□□□□ 0.21
SHMT2-209ENST00000553949 MRS2Q9HD23 443 aa16.39■□□□□ 0.21
SHMT2-209ENST00000553949 THRAP3Q9Y2W1 955 aaKnown RBP16.38■□□□□ 0.21
SHMT2-209ENST00000553949 NCAPD2Q15021 1401 aa16.37■□□□□ 0.21
SHMT2-209ENST00000553949 FAM208AQ9UK61 1670 aaKnown RBP16.37■□□□□ 0.21
SHMT2-209ENST00000553949 RBM6P78332 1123 aaKnown RBP16.37■□□□□ 0.21
SHMT2-209ENST00000553949 SULT6B1Q6IMI4 303 aa16.37■□□□□ 0.21
SHMT2-209ENST00000553949 BARGINQ6ZT62 677 aa16.37■□□□□ 0.21
SHMT2-209ENST00000553949 CCER2I3L3R5 266 aa16.36■□□□□ 0.21
SHMT2-209ENST00000553949 U2AF1L5P0DN76 240 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-209ENST00000553949 U2AF1Q01081 240 aaKnown RBP eCLIP16.36■□□□□ 0.21
SHMT2-209ENST00000553949 AEBP1Q8IUX7 1158 aa16.36■□□□□ 0.21
SHMT2-209ENST00000553949 GLI3P10071 1580 aa16.35■□□□□ 0.21
SHMT2-209ENST00000553949 HMOX1P09601 288 aa16.35■□□□□ 0.21
SHMT2-209ENST00000553949 RXRBP28702 533 aa16.35■□□□□ 0.21
SHMT2-209ENST00000553949 FAM98CQ17RN3 349 aaKnown RBP16.35■□□□□ 0.21
SHMT2-209ENST00000553949 RGPD1P0DJD0 1748 aa16.35■□□□□ 0.21
SHMT2-209ENST00000553949 KDRP35968 1356 aa16.35■□□□□ 0.21
SHMT2-209ENST00000553949 IL2RBP14784 551 aa16.34■□□□□ 0.21
SHMT2-209ENST00000553949 CDCA7Q9BWT1 371 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-209ENST00000553949 RGPD2P0DJD1 1756 aa16.33■□□□□ 0.21
SHMT2-209ENST00000553949 ONECUT3O60422 494 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-209ENST00000553949 WDR43Q15061 677 aaKnown RBP eCLIP16.33■□□□□ 0.2
SHMT2-209ENST00000553949 RAPGEF4Q8WZA2 1011 aa16.33■□□□□ 0.2
SHMT2-209ENST00000553949 DISP2A7MBM2 1401 aa16.33■□□□□ 0.2
SHMT2-209ENST00000553949 MEGF6O75095 1541 aa16.32■□□□□ 0.2
SHMT2-209ENST00000553949 PNISRQ8TF01 805 aaKnown RBP16.32■□□□□ 0.2
SHMT2-209ENST00000553949 FCHSD2O94868 740 aa16.31■□□□□ 0.2
SHMT2-209ENST00000553949 TATP17735 454 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-209ENST00000553949 RSPH6AQ9H0K4 717 aa16.31■□□□□ 0.2
SHMT2-209ENST00000553949 ADAMTS8Q9UP79 889 aa16.31■□□□□ 0.2
SHMT2-209ENST00000553949 A0A0G2JS52 829 aa16.3■□□□□ 0.2
SHMT2-209ENST00000553949 MYT1Q01538 1121 aa16.3■□□□□ 0.2
SHMT2-209ENST00000553949 OVOS2A0A0G2JMS6 1433 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms