RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 CCDC116Q8IYX3 515 aa5.46□□□□□ -1.54
PTCH1-223ENST00000551623 SPIRE2Q8WWL2 714 aa5.46□□□□□ -1.54
PTCH1-223ENST00000551623 CCDC102AQ96A19 550 aa5.46□□□□□ -1.54
PTCH1-223ENST00000551623 MAP4K5Q9Y4K4 846 aa5.46□□□□□ -1.54
PTCH1-223ENST00000551623 CNTNAP5Q8WYK1 1306 aa5.46□□□□□ -1.54
PTCH1-223ENST00000551623 VASH1Q7L8A9 365 aaPredicted RBP5.45□□□□□ -1.54
PTCH1-223ENST00000551623 C1QTNF2Q9BXJ5 285 aa5.45□□□□□ -1.54
PTCH1-223ENST00000551623 NACADO15069 1562 aa5.44□□□□□ -1.54
PTCH1-223ENST00000551623 SH3RF1Q7Z6J0 888 aa5.44□□□□□ -1.54
PTCH1-223ENST00000551623 CBLBQ13191 982 aa5.43□□□□□ -1.54
PTCH1-223ENST00000551623 GAS6Q14393 721 aa5.43□□□□□ -1.54
PTCH1-223ENST00000551623 Q6ZVU0 165 aa5.43□□□□□ -1.54
PTCH1-223ENST00000551623 PODNQ7Z5L7 613 aa5.43□□□□□ -1.54
PTCH1-223ENST00000551623 KRTAP1-3Q8IUG1 177 aa5.43□□□□□ -1.54
PTCH1-223ENST00000551623 BEND7Q8N7W2 519 aaPredicted RBP5.43□□□□□ -1.54
PTCH1-223ENST00000551623 KRI1Q8N9T8 703 aaKnown RBP5.43□□□□□ -1.54
PTCH1-223ENST00000551623 AMER1Q5JTC6 1135 aaPredicted RBP5.42□□□□□ -1.54
PTCH1-223ENST00000551623 TRMT44Q8IYL2 757 aaKnown RBP5.42□□□□□ -1.54
PTCH1-223ENST00000551623 SENP3-EIF4A1A0A087X0R7 540 aa5.41□□□□□ -1.54
PTCH1-223ENST00000551623 CFAP99D6REC4 459 aa5.41□□□□□ -1.54
PTCH1-223ENST00000551623 SSTR3P32745 418 aaPredicted RBP5.41□□□□□ -1.54
PTCH1-223ENST00000551623 CTSOP43234 321 aaPredicted RBP5.41□□□□□ -1.54
PTCH1-223ENST00000551623 BAG6P46379 1132 aa5.41□□□□□ -1.54
PTCH1-223ENST00000551623 PPP1R26Q5T8A7 1209 aaPredicted RBP5.41□□□□□ -1.54
PTCH1-223ENST00000551623 PGPEP1Q9NXJ5 209 aa5.41□□□□□ -1.54
PTCH1-223ENST00000551623 SHROOM4Q9ULL8 1493 aa5.4□□□□□ -1.54
PTCH1-223ENST00000551623 ARMC2Q8NEN0 867 aa5.39□□□□□ -1.55
PTCH1-223ENST00000551623 NEDD1Q8NHV4 660 aa5.39□□□□□ -1.55
PTCH1-223ENST00000551623 RNF217Q8TC41 542 aa5.39□□□□□ -1.55
PTCH1-223ENST00000551623 INSM2Q96T92 566 aaPredicted RBP5.39□□□□□ -1.55
PTCH1-223ENST00000551623 BICRAQ9NZM4 1560 aa5.38□□□□□ -1.55
PTCH1-223ENST00000551623 MAGEB6P1A0A0J9YX57 407 aa5.38□□□□□ -1.55
PTCH1-223ENST00000551623 BCRP11274 1271 aa5.38□□□□□ -1.55
PTCH1-223ENST00000551623 GJA5P36382 358 aa5.38□□□□□ -1.55
PTCH1-223ENST00000551623 NBPF14Q5TI25 921 aa5.38□□□□□ -1.55
PTCH1-223ENST00000551623 SH3BP5LQ7L8J4 393 aa5.38□□□□□ -1.55
PTCH1-223ENST00000551623 POLMQ9NP87 494 aaPredicted RBP5.38□□□□□ -1.55
PTCH1-223ENST00000551623 MBIPQ9NS73 344 aa5.38□□□□□ -1.55
PTCH1-223ENST00000551623 MYO15BQ96JP2 1530 aa5.38□□□□□ -1.55
PTCH1-223ENST00000551623 FURINP09958 794 aa5.37□□□□□ -1.55
PTCH1-223ENST00000551623 RELBQ01201 579 aa5.37□□□□□ -1.55
PTCH1-223ENST00000551623 RSBN1LQ6PCB5 846 aaPredicted RBP5.37□□□□□ -1.55
PTCH1-223ENST00000551623 AGBL1Q96MI9 1066 aa5.37□□□□□ -1.55
PTCH1-223ENST00000551623 CUEDC1Q9NWM3 386 aaPredicted RBP5.37□□□□□ -1.55
PTCH1-223ENST00000551623 IGF1RP08069 1367 aa5.37□□□□□ -1.55
PTCH1-223ENST00000551623 PER1O15534 1290 aaPredicted RBP5.36□□□□□ -1.55
PTCH1-223ENST00000551623 HRCP23327 699 aa5.36□□□□□ -1.55
PTCH1-223ENST00000551623 CARD14Q9BXL6 1004 aa5.36□□□□□ -1.55
PTCH1-223ENST00000551623 ZBTB3Q9H5J0 574 aa5.36□□□□□ -1.55
PTCH1-223ENST00000551623 PCDHB15Q9Y5E8 787 aa5.36□□□□□ -1.55
PTCH1-223ENST00000551623 KRBA1A5PL33 1030 aa5.35□□□□□ -1.55
PTCH1-223ENST00000551623 ERFEQ4G0M1 354 aa5.35□□□□□ -1.55
PTCH1-223ENST00000551623 LCE3BQ5TA77 95 aa5.35□□□□□ -1.55
PTCH1-223ENST00000551623 CECR2Q9BXF3 1484 aa5.34□□□□□ -1.55
PTCH1-223ENST00000551623 DHX9Q08211 1270 aaKnown RBP5.34□□□□□ -1.55
PTCH1-223ENST00000551623 PRPF38BQ5VTL8 546 aaKnown RBP5.34□□□□□ -1.55
PTCH1-223ENST00000551623 FOXD4L5Q5VV16 416 aaPredicted RBP5.34□□□□□ -1.55
PTCH1-223ENST00000551623 ACDQ96AP0 544 aa5.34□□□□□ -1.55
PTCH1-223ENST00000551623 ZNF837Q96EG3 531 aaPredicted RBP5.34□□□□□ -1.55
PTCH1-223ENST00000551623 TBC1D2Q9BYX2 928 aa5.34□□□□□ -1.55
PTCH1-223ENST00000551623 ZNF395Q9H8N7 513 aaPredicted RBP5.34□□□□□ -1.55
PTCH1-223ENST00000551623 LRRC4BQ9NT99 713 aa5.34□□□□□ -1.55
PTCH1-223ENST00000551623 GPR25O00155 361 aa5.33□□□□□ -1.56
PTCH1-223ENST00000551623 GMCL1Q96IK5 515 aa5.33□□□□□ -1.56
PTCH1-223ENST00000551623 DIXDC1Q155Q3 683 aa5.32□□□□□ -1.56
PTCH1-223ENST00000551623 FOXR1Q6PIV2 292 aa5.32□□□□□ -1.56
PTCH1-223ENST00000551623 ALYREFQ86V81 257 aaKnown RBP5.32□□□□□ -1.56
PTCH1-223ENST00000551623 TRIM22Q8IYM9 498 aa5.32□□□□□ -1.56
PTCH1-223ENST00000551623 CABLES1Q8TDN4 633 aa5.32□□□□□ -1.56
PTCH1-223ENST00000551623 TSC1Q92574 1164 aa5.32□□□□□ -1.56
PTCH1-223ENST00000551623 GPKOWQ92917 476 aaPredicted RBP eCLIP5.32□□□□□ -1.56
PTCH1-223ENST00000551623 KCTD15Q96SI1 283 aaPredicted RBP5.32□□□□□ -1.56
PTCH1-223ENST00000551623 BEGAINQ9BUH8 593 aa5.32□□□□□ -1.56
PTCH1-223ENST00000551623 CDV3Q9UKY7 258 aaKnown RBP5.32□□□□□ -1.56
PTCH1-223ENST00000551623 UNC13AQ9UPW8 1703 aa5.31□□□□□ -1.56
PTCH1-223ENST00000551623 SNRPNP63162 240 aaKnown RBP5.31□□□□□ -1.56
PTCH1-223ENST00000551623 TTLL12Q14166 644 aaPredicted RBP5.31□□□□□ -1.56
PTCH1-223ENST00000551623 GIGYF2Q6Y7W6 1299 aaKnown RBP5.31□□□□□ -1.56
PTCH1-223ENST00000551623 LYSMD3Q7Z3D4 306 aa5.31□□□□□ -1.56
PTCH1-223ENST00000551623 KRTAP4-12Q9BQ66 201 aa5.31□□□□□ -1.56
PTCH1-223ENST00000551623 TULP1O00294 542 aaPredicted RBP5.3□□□□□ -1.56
PTCH1-223ENST00000551623 OIP5O43482 229 aa5.3□□□□□ -1.56
PTCH1-223ENST00000551623 INTS6LQ5JSJ4 861 aaKnown RBP5.3□□□□□ -1.56
PTCH1-223ENST00000551623 SLC10A4Q96EP9 437 aa5.3□□□□□ -1.56
PTCH1-223ENST00000551623 CC2D2AQ9P2K1 1620 aa5.3□□□□□ -1.56
PTCH1-223ENST00000551623 ADH1AP07327 375 aa5.29□□□□□ -1.56
PTCH1-223ENST00000551623 COL8A1P27658 744 aa5.29□□□□□ -1.56
PTCH1-223ENST00000551623 DBN1Q16643 649 aa5.29□□□□□ -1.56
PTCH1-223ENST00000551623 CSPP1Q1MSJ5 1256 aa5.29□□□□□ -1.56
PTCH1-223ENST00000551623 RIC3Q7Z5B4 369 aa5.29□□□□□ -1.56
PTCH1-223ENST00000551623 MKL2Q9ULH7 1088 aa5.29□□□□□ -1.56
PTCH1-223ENST00000551623 RHOQP17081 205 aa5.28□□□□□ -1.56
PTCH1-223ENST00000551623 MX2P20592 715 aa5.28□□□□□ -1.56
PTCH1-223ENST00000551623 RIPOR1Q6ZS17 1223 aa5.28□□□□□ -1.56
PTCH1-223ENST00000551623 ARHGAP9Q9BRR9 750 aa5.28□□□□□ -1.56
PTCH1-223ENST00000551623 NSFL1CQ9UNZ2 370 aaKnown RBP5.28□□□□□ -1.56
PTCH1-223ENST00000551623 ITGB7P26010 798 aa5.27□□□□□ -1.57
PTCH1-223ENST00000551623 PTGIRP43119 386 aa5.27□□□□□ -1.57
PTCH1-223ENST00000551623 AMHR2Q16671 573 aa5.27□□□□□ -1.57
PTCH1-223ENST00000551623 PRICKLE2Q7Z3G6 844 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms