RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 ZBTB3Q9H5J0 574 aa4.87□□□□□ -1.63
LIMA1-207ENST00000551486 MAP10Q9P2G4 905 aa4.87□□□□□ -1.63
LIMA1-207ENST00000551486 SLC35F4A4IF30 521 aa4.86□□□□□ -1.63
LIMA1-207ENST00000551486 ADAMTS2O95450 1211 aa4.86□□□□□ -1.63
LIMA1-207ENST00000551486 F12P00748 615 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-207ENST00000551486 TTLL12Q14166 644 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-207ENST00000551486 BEND7Q8N7W2 519 aaPredicted RBP4.86□□□□□ -1.63
LIMA1-207ENST00000551486 SPINT1O43278 529 aa4.85□□□□□ -1.63
LIMA1-207ENST00000551486 SRSF11Q05519 484 aaKnown RBP4.85□□□□□ -1.63
LIMA1-207ENST00000551486 C4orf48Q5BLP8 95 aa4.85□□□□□ -1.63
LIMA1-207ENST00000551486 TRMT44Q8IYL2 757 aaKnown RBP4.85□□□□□ -1.63
LIMA1-207ENST00000551486 KRTAP4-12Q9BQ66 201 aa4.85□□□□□ -1.63
LIMA1-207ENST00000551486 MAGEB6P1A0A0J9YX57 407 aa4.84□□□□□ -1.63
LIMA1-207ENST00000551486 DHX9Q08211 1270 aaKnown RBP4.84□□□□□ -1.63
LIMA1-207ENST00000551486 PLA2G4EQ3MJ16 856 aa4.84□□□□□ -1.63
LIMA1-207ENST00000551486 FOXR1Q6PIV2 292 aa4.84□□□□□ -1.63
LIMA1-207ENST00000551486 LYPD4Q6UWN0 246 aa4.84□□□□□ -1.63
LIMA1-207ENST00000551486 TSC1Q92574 1164 aa4.84□□□□□ -1.63
LIMA1-207ENST00000551486 SPOCK3Q9BQ16 436 aa4.84□□□□□ -1.63
LIMA1-207ENST00000551486 C1QTNF2Q9BXJ5 285 aa4.84□□□□□ -1.63
LIMA1-207ENST00000551486 KDM2AQ9Y2K7 1162 aa4.84□□□□□ -1.63
LIMA1-207ENST00000551486 BTBD11A6QL63 1104 aa4.83□□□□□ -1.64
LIMA1-207ENST00000551486 CFAP99D6REC4 459 aa4.83□□□□□ -1.64
LIMA1-207ENST00000551486 CELA2BP08218 269 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-207ENST00000551486 PPP1R26Q5T8A7 1209 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-207ENST00000551486 PRPF38BQ5VTL8 546 aaKnown RBP4.83□□□□□ -1.64
LIMA1-207ENST00000551486 RSBN1LQ6PCB5 846 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-207ENST00000551486 Q6ZVU0 165 aa4.83□□□□□ -1.64
LIMA1-207ENST00000551486 NEDD1Q8NHV4 660 aa4.83□□□□□ -1.64
LIMA1-207ENST00000551486 DCAF5Q96JK2 942 aa4.83□□□□□ -1.64
LIMA1-207ENST00000551486 BEGAINQ9BUH8 593 aa4.83□□□□□ -1.64
LIMA1-207ENST00000551486 POLMQ9NP87 494 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-207ENST00000551486 CDV3Q9UKY7 258 aaKnown RBP4.83□□□□□ -1.64
LIMA1-207ENST00000551486 K7ELQ4 463 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-207ENST00000551486 HRCP23327 699 aa4.82□□□□□ -1.64
LIMA1-207ENST00000551486 CBLBQ13191 982 aa4.82□□□□□ -1.64
LIMA1-207ENST00000551486 SH3RF1Q7Z6J0 888 aa4.82□□□□□ -1.64
LIMA1-207ENST00000551486 GPKOWQ92917 476 aaPredicted RBP eCLIP4.82□□□□□ -1.64
LIMA1-207ENST00000551486 TBC1D2Q9BYX2 928 aa4.82□□□□□ -1.64
LIMA1-207ENST00000551486 NUTM2BA6NNL0 878 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-207ENST00000551486 NUTM2EB1AL46 878 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-207ENST00000551486 NUTM2DQ5VT03 806 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-207ENST00000551486 NUTM2AQ8IVF1 878 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-207ENST00000551486 CARD14Q9BXL6 1004 aa4.81□□□□□ -1.64
LIMA1-207ENST00000551486 CNTNAP5Q8WYK1 1306 aa4.8□□□□□ -1.64
LIMA1-207ENST00000551486 CTSOP43234 321 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-207ENST00000551486 RELBQ01201 579 aa4.8□□□□□ -1.64
LIMA1-207ENST00000551486 GIGYF2Q6Y7W6 1299 aaKnown RBP4.8□□□□□ -1.64
LIMA1-207ENST00000551486 RIC3Q7Z5B4 369 aa4.8□□□□□ -1.64
LIMA1-207ENST00000551486 HELBQ8NG08 1087 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-207ENST00000551486 TRIM52Q96A61 297 aa4.8□□□□□ -1.64
LIMA1-207ENST00000551486 GMCL1Q96IK5 515 aa4.8□□□□□ -1.64
LIMA1-207ENST00000551486 INSM2Q96T92 566 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-207ENST00000551486 PCDHB15Q9Y5E8 787 aa4.8□□□□□ -1.64
LIMA1-207ENST00000551486 BCRP11274 1271 aa4.79□□□□□ -1.64
LIMA1-207ENST00000551486 SH3BP5LQ7L8J4 393 aa4.79□□□□□ -1.64
LIMA1-207ENST00000551486 SLC10A4Q96EP9 437 aa4.79□□□□□ -1.64
LIMA1-207ENST00000551486 MBIPQ9NS73 344 aa4.79□□□□□ -1.64
LIMA1-207ENST00000551486 NSFL1CQ9UNZ2 370 aaKnown RBP4.79□□□□□ -1.64
LIMA1-207ENST00000551486 PER1O15534 1290 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-207ENST00000551486 CSPP1Q1MSJ5 1256 aa4.78□□□□□ -1.64
LIMA1-207ENST00000551486 ERFEQ4G0M1 354 aa4.78□□□□□ -1.64
LIMA1-207ENST00000551486 ZBTB33Q86T24 672 aa4.78□□□□□ -1.64
LIMA1-207ENST00000551486 RNF217Q8TC41 542 aa4.78□□□□□ -1.64
LIMA1-207ENST00000551486 AGBL1Q96MI9 1066 aa4.78□□□□□ -1.64
LIMA1-207ENST00000551486 KCTD15Q96SI1 283 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-207ENST00000551486 ARHGAP9Q9BRR9 750 aa4.78□□□□□ -1.64
LIMA1-207ENST00000551486 PROCP04070 461 aa4.77□□□□□ -1.65
LIMA1-207ENST00000551486 AMHR2Q16671 573 aa4.77□□□□□ -1.65
LIMA1-207ENST00000551486 LYSMD3Q7Z3D4 306 aa4.77□□□□□ -1.65
LIMA1-207ENST00000551486 ALYREFQ86V81 257 aaKnown RBP4.77□□□□□ -1.65
LIMA1-207ENST00000551486 Q8N3U1 123 aa4.77□□□□□ -1.65
LIMA1-207ENST00000551486 CABLES1Q8TDN4 633 aa4.77□□□□□ -1.65
LIMA1-207ENST00000551486 TRERF1Q96PN7 1200 aa4.77□□□□□ -1.65
LIMA1-207ENST00000551486 IGF1RP08069 1367 aa4.77□□□□□ -1.65
LIMA1-207ENST00000551486 H7C1W4 665 aa4.76□□□□□ -1.65
LIMA1-207ENST00000551486 ZNF395Q9H8N7 513 aaPredicted RBP4.76□□□□□ -1.65
LIMA1-207ENST00000551486 LRRC4BQ9NT99 713 aa4.76□□□□□ -1.65
LIMA1-207ENST00000551486 SENP3-EIF4A1A0A087X0R7 540 aa4.75□□□□□ -1.65
LIMA1-207ENST00000551486 BAG6P46379 1132 aa4.75□□□□□ -1.65
LIMA1-207ENST00000551486 PLCB2Q00722 1185 aa4.75□□□□□ -1.65
LIMA1-207ENST00000551486 GAS6Q14393 721 aa4.75□□□□□ -1.65
LIMA1-207ENST00000551486 PDXDC2PQ6P474 469 aa4.75□□□□□ -1.65
LIMA1-207ENST00000551486 RIPOR1Q6ZS17 1223 aa4.75□□□□□ -1.65
LIMA1-207ENST00000551486 TRIM22Q8IYM9 498 aa4.75□□□□□ -1.65
LIMA1-207ENST00000551486 NBPF20Q3BBV1 942 aa4.74□□□□□ -1.65
LIMA1-207ENST00000551486 KRTAP4-7Q9BYR0 210 aa4.74□□□□□ -1.65
LIMA1-207ENST00000551486 PIK3R2O00459 728 aa4.73□□□□□ -1.65
LIMA1-207ENST00000551486 ITGB2P05107 769 aa4.73□□□□□ -1.65
LIMA1-207ENST00000551486 ADH1AP07327 375 aa4.73□□□□□ -1.65
LIMA1-207ENST00000551486 MX2P20592 715 aa4.73□□□□□ -1.65
LIMA1-207ENST00000551486 PTGIRP43119 386 aa4.73□□□□□ -1.65
LIMA1-207ENST00000551486 PTK2Q05397 1052 aa4.73□□□□□ -1.65
LIMA1-207ENST00000551486 TUSC1Q2TAM9 212 aa4.73□□□□□ -1.65
LIMA1-207ENST00000551486 INTS6LQ5JSJ4 861 aaKnown RBP4.73□□□□□ -1.65
LIMA1-207ENST00000551486 MKL2Q9ULH7 1088 aa4.73□□□□□ -1.65
LIMA1-207ENST00000551486 LILRB3O75022 631 aa4.72□□□□□ -1.65
LIMA1-207ENST00000551486 FURINP09958 794 aa4.72□□□□□ -1.65
LIMA1-207ENST00000551486 BARGINQ6ZT62 677 aa4.72□□□□□ -1.65
LIMA1-207ENST00000551486 PRICKLE2Q7Z3G6 844 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms